FFAS03 results for KOG0131

Query: [A] KOG0131 Splicing factor 3b, subunit 4, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360
#	Score	Template	Links and tools	%id	First	`MTTRIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPSSAPQVNGLPRPFANGSMQPVPIPAPRQPPPPPPQVYQTQPPSWPSQPQQHSMVPPPMQFRPPQGMPPPPPPQFLNHQQGFGGPRPPPPPQAMGMHQHGGWPPQHMQQQGGPPQQQQPPYQHHHMSMPPPPPHQG`	Last
1	-88.500	`[A] KOG0131 Splicing factor 3b, subunit 4`	`ali`	100	1	`MTTRIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPSSAPQVNGLPRPFANGSMQPVPIPAPRQPPPPPPQVYQTQPPSWPSQPQQHSMVPPPMQFRPPQGMPPPPPPQFLNHQQGFGGPRPPPPPQAMGMHQHGGWPPQHMQQQGGPPQQQQPPYQHHHMSMPPPPPHQG`	363
2	-61.500	`[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)`	`ali follow..`	20	105	`MGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQRAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCT-LARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGL-----------PPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGV......................................................................................`	379
3	-59.300	`[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)`	`ali follow..`	24	2	`...............NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV---CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA-------------KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA...........................................................`	274
4	-58.300	`[A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)`	`ali follow..`	19	23	`.GPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS-SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSR-ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAH..............................................................`	378
5	-56.900	`[AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)`	`ali follow..`	22	2	`...................EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKSNHFHVFVGDLSPQITTEDIKAAFAPFGRISDAR-VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINP................................................................`	282
6	-56.200	`[R] KOG4733 FOG: RRM domain`	`ali follow..`	17	47	`.........NSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDP--------TNLYISNLPLSMDEQELENMLKPFGQVISTR-ILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQ-------------NPNKYIPNGRPWHREGEVRLAGMTLTYDPTTA---AIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYAH..`	372
7	-55.300	`[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)`	`ali follow..`	27	136	`..........REPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQAEKNRLAAPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIV-LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTD.....................................................................................................................................................................`	332
8	-54.200	`[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)`	`ali follow..`	16	101	`.........SQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS-------GKGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHG-------AAIRVKELSPTVSNEMLYHAFSHFGDVERAV-HIVDE-KGRPTGEGIVEFERKPNCNEAMAAIRDKVFSPKPLICEVLEPRDEDDGL---------------------AERMIPRTPGLSKERELGPRFPTPNSFEYVYGMKRRAQLDEELRESRRRLESDMELAYQDYQAQMLREDLQRRQQELERLEAARRERMRGLGGPPPGMPGGVPPQAQPFNPHGGSMFGGPGGPGGPPPFGQPFQQAPQ......`	425
9	-51.900	`[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)`	`ali follow..`	15	34	`.ENGQRKYGGPPPGWD-AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNC------RLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQGHGIAVDWAEPEVEVDEDTMSSVK----------------ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSP...............................................................................`	295
10	-51.000	`[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)`	`ali follow..`	20	2	`..........NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNQSKGCCFVTFYTRKAALEAQNALHNMKVLPGPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECR-ILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTCSSPMVVKFADTQKDKEQKRMAQTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY..........................................................`	482
11	-50.700	`[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)`	`ali follow..`	26	39	`.........SPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPRPIQVKPADSERQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECT-ILRGP-DGNSKGCAFVKYSSHAEAQAAINALHGSQTASSSLVVKFADTDKERTMRRMQQ.................................................................................................................................................................`	243
12	-48.000	`[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19`	`ali follow..`	16	1	`..................................................MESRHFATALVFLASKGFVDILYWVYRFQASSMAFCTKL---GGHWKQGVNVPVSSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEAR-VMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLPLSLDESIEEAEKKENKMMSRSVWKPFVDAFLMKKKNAALNRKIWSRRSTILPEYV--DSAVRIYNGKTHVRCKITEGKVGHK.....................................................................................`	227
13	-47.900	`[A] KOG4212 RNA-binding protein hnRNP-M`	`ali follow..`	22	56	`.........RGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEVGEVTYVELLMDA-EGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILE--DKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPE.................................................................................................................................................................`	292
14	-47.900	`[K] KOG4210 Nuclear localization sequence binding protein`	`ali follow..`	14	110	`.........ESGEVVKKKKKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEAAKNSNAMKNKGFCYMFFKNVEQMKAVLE-LSESHLNGRNMLIKDSENYSGRPDKDDILFVGNLSFDVTDDLLRKHFQHCGDIVKIR-MATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVS---------RNNSSSFDISNNKGYDRAGQDNGSKPEYKRSNANRRPPVDSNNRTKSSVALATAQRGSAA.........................................................................................`	391
15	-47.500	`[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)`	`ali follow..`	16	2	`............SGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNR---HGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADV--------QKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSTSYGYSRSR..............................................................................................................................................................`	196
16	-47.200	`[R] KOG0226 RNA-binding proteins`	`ali follow..`	16	83	`.........FINPALGRLPTMPPVPPSIFMPPQLRAAPIMFPPRVLGIPAPATIEGAPALYETPAVNAIPQELLRTQALQSDIDKMNFKKQTDPFKKKIKEQQAKKKDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAK-VVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKERNIDVIKQKRKQ..............................................................................................................................................................`	295
17	-46.900	`[R] KOG0118 FOG: RRM domain`	`ali follow..`	23	158	`.........MNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGD--PNSVLRFAFIEFTDEEGAMTALN-LSGTMLGFYPVKVLPSKTADEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGD--YQHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPRSPRHP..................................................................................................................................................................`	356
18	-46.700	`[A] KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1`	`ali follow..`	18	24	`.GHEEARLNADSDDGSHGSQDPG--KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN-REHELDGKKIDPKVAFPKRTQAKKTKKVFIGGLSATSTLEDMKQYFETYGKVEDA-MLMFDKATQRHRGFGFVTFDSDEVADKVCEI-HFHEINGKMVECKKAQPKEVMLPVQLNKSR-------------AAAARNLYGMPPE-TLLAYAQYLPRFGGNLMYPNFTNVFNNMPGGYSGLSTPGGSSNRPPHQFDTASLYSLNNGGQLLDSQAQMFMNQQSYHSHSK..................................................`	319
19	-46.200	`[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)`	`ali follow..`	16	578	`.........GSFAVQKAAPGTEDARTIFVSNLDFTTTEDEIRQAIEGVASIRFARKANS--DLVHRGFAYVVMENDQKAQQALL-KDRVPVKGRPMFISANDPEKRVGFKKSKVFVRNVHFQATDDELKALFSKFGTVTSVRRVT--HKDGKPKGIAFVDFDTEASAQKCVASGDKLMLRERELEVALSNPPVKKDKSHGKPAAIGASLEEDGPRKGHAAKL.............................................................................................................................................`	791
20	-45.000	`[A] KOG0120 Splicing factor U2AF, large subunit (RRM superfamily)`	`ali follow..`	16	78	`.........QTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQVLACQINLDKNFAFLEFRSIDETTQAMA-FDGINLKGQSLKIRRPHDYQPMPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFN-LVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSVMLQVPGLSNVVTSGDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTS...........................................................................`	404
21	-44.900	`[D] KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins`	`ali follow..`	17	170	`.........AGRVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYT-----ACKSRGFVMISYYDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREI------RETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQD..............................................................................................................................................................`	357
22	-44.400	`[R] KOG0110 RNA-binding protein (RRM superfamily)`	`ali follow..`	18	349	`.........HQQDSLSKEDDISESGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTLDGTDFHGRLLHLLPSKDIEKNPKSNTVILAKNLPAATEISEITPIFSRFGPIGRIVL-------PPSGVTALIEYCDPLEARQAFKKLAYSKFKNAPLYLEWAPEQVFTKTLSGEPVEEDSRAEDADDEPEPNTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRGYGFIQFKKSSVAEHALKNLQLTHIDGNP...............................................................................`	754
23	-43.000	`[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)`	`ali follow..`	14	7	`.........VTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGI----TEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE-IIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYA...............................................................................................................................................................`	201
24	-41.500	`[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B`	`ali follow..`	20	2	`................LTADIPPNQSIYIQNLNERIKKEELKRLFSQFGRILDVVALK---TPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMI------DAKPGIAFVEYEDDVQASIAMQPLQGFKITPQPMVISFAKK............................................................................................................................................................................`	232
25	-40.500	`[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)`	`ali follow..`	17	95	`.........HLTMVSTEEILLERPRAPGTKADESKATGDGLSQLGKGGAVLMVCRICHKKGDHWTSKCPYKDLAAPTDVFIDKPPTGESSTMSAAPGTGKAASDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVY-VAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRPT.........................................................................................................................................................................`	294
26	-36.700	`[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)`	`ali follow..`	16	2	`........................VRVYIGRLPNRASDRDVEHFFRGYGKLSDVIM--------KNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGYNSTRFRLVIDNLSTRYSWQDIKDHIRKLGIEPTY-----SEAHKRNVNQAIVCFTSHDDLRDAMNKLQGEDLNGRKLKCTDETRDRSRSRSPRRRSR...............................................................................................................................................................`	199
27	-36.000	`[AR] KOG1365 RNA-binding protein Fusilli, contains RRM domain`	`ali follow..`	13	162	`.........APILEDQEVGADGDNVVCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLALK-RHRNFLLSRYIEVYKAGLDEFVSANAIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFIT--RTDGRPTGDAFVQFETEEDAQQGLL-KHRQVIGQRYIELFKSTAAEVQQVVKRCNLINSSPAVANAVEAPEEKKVRLRGLPYEATVQHIVTFLGDFATMVKFQGVH-NNQGHPSGEAFIQMINEQAASACAAGVHNNFMSVGKKKRYIEVFQASAEELNLHHLVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISPIVPGQVTQLIIYG`	530
28	-35.300	`[A] KOG1190 Polypyrimidine tract-binding protein`	`ali follow..`	16	44	`.........SKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPRGQPIYIQFSNHKELKTDSSPNIIVENLFYPVTLDVLHQIFSKFGTVLKIITF-----TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL........................................................`	445
29	-34.600	`[A] KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins`	`ali follow..`	12	4	`.................GTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRYTREGRPSGEAFVELESEDEVKLALKK-DRETMGHRYVEVFKSNNVEPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDF-QGRSTGEAFVQFASQEIAEKALK-KHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGVHMRGLPYRATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEDAVAAMSKDKA................................................................................`	350
30	-34.400	`[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)`	`ali follow..`	22	18	`............SRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGRQYG-RGKTGGQVRDEYRTDYDAGRGGYGKLLSQK-IAPNTDN.....................................................................................................................................................................................................................`	153
31	-34.400	`[AR] KOG0109 RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains`	`ali follow..`	17	287	`.........NKELPPPLPPRGACPDDEAVHQKPAPGHRAGDPLSFQAVGKVLECDII--------KNYGFVHIEDKTAAEDTIHNLHHYKLHGVNINVEASKNKSKAS---TKLHVGNISPTCTNQELQAKFEKYGPVIECDIV---------KDYVLIHFIHMECCPQARLRTAPGMGDQCGCYQCKKEGHWSKECPVDRTGR...............................................................................................................................................................`	462
32	-33.900	`[J] KOG0129 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	16	438	`.......SPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAKSYFPPKGYAFLLFQDESSVQALIDACI-EEDGKLYLCVSSPTIKDKPVDPRKTIFVGGVPRPLRAVELAMIMDRYGGVCYAG-IDTDPELKYPKGAGRVAFSNQQSYIAAISA-RFVQLQHGEIDKRVEVKPYVLDDQ.....................................................................................................................................................................`	648
33	-33.900	`[K] KOG1548 Transcription elongation factor TAT-SF1`	`ali follow..`	10	95	`.........SKSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPEDGTPKGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVVLKHIFTLEEKDDITEEAEKCGRVTNVVL-----YDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTLD...............................................................................................................................................................`	347
34	-33.500	`[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)`	`ali follow..`	17	1	`MA--YQPVPGSGFHLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD-PTPIIDGRRANCNLASLGRPRPPLPYAIPNMPDLLPRTLEMCRVLEVHLLEIIRIS-NHFHITTSKELSILMVTAYGPEYMYSQ.................................................................................................................................................................................................`	168
35	-33.400	`[A] KOG4209 Splicing factor RNPS1, SR protein superfamily`	`ali follow..`	15	1	`............................................MSDNDIIDDDVLNIEDMTGDDADLSAIELNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNEEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVT-IQCDRFSGHPKGFAYVEFTEKEGMQNALA-MTDSLLRGRQIKVDPKRTNKPGMSTTNRPPFR--GRGGRGRGNVIVKYVYAGGFRPRGRGARRRPGFAPY........................................................................................................................`	205
36	-31.800	`[R] KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains`	`ali follow..`	13	209	`.........SNNDRYSDWNPGVPSNKLAILNMPNDVDNTKITLSLGKCGYLVRTMTKFDKNTKQIRTFAFVEFSNRETAEQWMTDYEGWLTDGRTLAVEYAKGDPAAGSGCDTLLIRGLPDGINNSLIFDSLGALVCLSS----ISMIKLSESKRFAYLQMKSADEAKMLLNLTYKSRIKDKDVQVSWCRDSMSKLIQQQMT.................................................................................................................................................................`	451
37	-31.600	`[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15`	`ali follow..`	28	2	`...................SMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRRNQSYEY..........................................................................................................................................................................................................................................................`	95
38	-30.600	`[A] KOG4207 Predicted splicing factor, SR protein superfamily`	`ali follow..`	22	2	`............SCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEPHTKAPRGFAFVRFHDRSDAQDAEAAMDGAVLDERELRVRMARYGRRDLPR.............................................................................................................................................................................................................................................................`	99
39	-29.600	`[R] COG0724 RNA-binding proteins (RRM domain)`	`ali follow..`	22	176	`.........PSSDAYRDSRERDDMCTLKIMQVNENADENSLRELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPKVKE................................................................................................................................................................................................................................................................`	274
40	-29.500	`[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)`	`ali follow..`	19	58	`.........DDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKSE..........................................................................................................................................................................................................................................................`	161
41	-28.500	`[R] KOG4454 RNA binding protein (RRM superfamily)`	`ali follow..`	24	2	`.............EIKPTPSPPEERTIYVANFSEEVDEELLEELFIQAGPVVKVILRDV--RDSNAKFALVEFEDELSVLFAIELMNGVRLFNQELQVKPRNGTNQEELYKRK..........................................................................................................................................................................................................................................................`	99
42	-28.500	`[R] KOG0151 Predicted splicing regulator, contains RRM, SWAP and RPR domains`	`ali follow..`	16	35	`QLVCIKSPWNRFKGIMLQLRLLLEVTINPNDNKLKPDSQGMFPPFVKDQRIRDEERSKEMEKGKTRNIDFVEELKREQEIRERRNQDRENSRDHNSDNTSSSRFDDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIM-TEEEKRRERHCGFVAFMNRADGEAAKEKMQGIIVYEYELKIGWGKVVFLPSQ......................................................................................................................................................................`	258
43	-27.000	`[D] KOG2186 Cell growth-regulating nucleolar protein`	`ali follow..`	18	398	`..............LESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPE-KRMYNRIVVCNLASEKPGKAGKEQD..........................................................................................................................................................................................................................................................`	495
44	-26.000	`[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	17	2	`...........NKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMD..........................................................................................................................................................................................................................................................`	100
45	-26.000	`[R] KOG4208 Nucleolar RNA-binding protein NIFK`	`ali follow..`	15	2	`...................AAFSRSAGPILSLNP-QEDAELQKEVAQCDTVTRFRLSRKKRTGNSKGYAFVEFESEDVAKIVTETMNSYLFGERLLECHFMPPEKKMES..............................................................................................................................................................................................................................................................`	90
46	-25.500	`[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)`	`ali follow..`	23	2	`........................SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARR-----PPGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRGGGGGRGGGRGGG..........................................................................................................................................................................................................................................................`	85
47	-25.200	`[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	25	14	`..NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDS.............................................................................................................................................................................................................................................................`	121
48	-23.700	`[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	14	90	`LPIQVRDAALKVADNMPQSDVNKEYYIQ-EAAGAVGRSLAANEMLSKLARTAPYYKRNRPHICSFWVKGECKRGEECPYRHDKPNEPDDPLCEQNIKDRYYGRNPPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIALV-------PRQQCAFVQYTKRNAAELAAERTNKLVIQGRKVSIKWAHSQAKQGTAAKTDRR...............................................................................................................................................................`	316
49	-23.600	`[R] KOG1457 RNA binding protein (contains RRM repeats)`	`ali follow..`	15	12	`...........................................................GSTGTGSGAGSGGALEEEPQNLGFGRGQSCELEAGIHRGI-FVHELKTRPGVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLI-----KLTARQPVGFVIFDSRAGAEAAKNALNGIRFDPQTLRLEFAKANTKMAKSKLMATP...............................................................................................................................................................`	183
50	-22.300	`[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)`	`ali follow..`	25	391	`.........TKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVGKKTSDK..........................................................................................................................................................................................................................................................`	494
51	-21.200	`[R] KOG4307 RNA binding protein RBM12/SWAN`	`ali follow..`	17	591	`.........SRSPRRREEHTDPTRWCVQVTNVPFRMKDEELLEWFSE--KVRPAKLTR-YSDGNASDRWVAEFSSESLMKRSFG--IRTLCTGRTLRLRYIDNAKADEPRGTVLSCNGFPKDVTLEDVVEFFNDY-EPDRNSIRIRRGDDGVMTGECMLACQNQENARRASMDLDGQKLRNSVISVR................................................................................................................................................................................`	946
52	-18.900	`[A] KOG0533 RRM motif-containing protein`	`ali follow..`	17	59	`.........VQNHGISSRGNDSKVIRVNISNLAPTVISSDLEELFGDYR-LSSVSVNFNE-HGDSLGTGDISLTK-RDAERLVQKFSGVALDGKIMKFAVIDSSNMAGRV.............................................................................................................................................................................................................................................................`	156
53	-18.600	`[R] KOG2135 Proteins containing the RNA recognition motif`	`ali follow..`	13	351	`.........GFARGGFTGAINRDNCTLQVAKIPPENTIAKLNEHFATFGTVDNIQVRYNGEIDS----ALVTYASKFDAGKAYKSPT-PVLNNRFIKVFWHNPGGEGSENATVVIVRGVTDE-LVTDLMAHMEKFGEVFDHSVKADDDGLITA----VFPFRKTGDALKAMA--DGKVLNGVDLEMELKTERIEEIPSTDTNMSADQLLAAIPSNLESDEE..............................................................................................................................................`	713
54	-16.100	`[R] KOG1995 Conserved Zn-finger protein`	`ali follow..`	18	265	`.........KVKQCDADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGNIKIYTD-EKGNYKGDACLAYEDPSAAHSAGGFFNNYEMRGNKISVTMAEKSAPRADQSFIILVGNMSFCNAK..............................................................................................................................................................................................................................................`	396
55	-16.000	`[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit`	`ali follow..`	17	78	`.........YHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGDLQEVKFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQ...............................................................................................................................................................................................................................................................`	178
56	-15.900	`[K] KOG2068 MOT2 transcription factor`	`ali follow..`	13	2	`.................SDYGEKTCPLCAEEMD--LTDQQLKPCKCGYQICVWC--IMDMAEKDQSEGRCPACRTPYDKEKIVGMTVDQERLASEGNMDRKKIQKSKPKSSDGVYIVGLPLNLADEDLKEYFGQYGKVLKVSMSRTIQQFPNNTCSVYITYGKEEEAIRCIQSVHGFILDGKALKACFGTTK...........................................................................................................................................................................`	196
57	-15.800	`[A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)`	`ali follow..`	20	89	`...........DPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRR..........................................................................................................................................................................................................................................................`	190
58	-15.800	`[A] KOG1996 mRNA splicing factor`	`ali follow..`	12	196	`.........EDSRPRSQSSKAAIPPPVYEEPDRPRSPTGPSNSFLANMGGTVAHKIMQKYGFREGQGLG----KHEQGLSTALSVEKTSKRGGKIIVGDATEKGEAQDASKKSVLLRNMAGEVDEDETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQ.................................................................................................................................................................`	404
59	-15.700	`[K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)`	`ali follow..`	11	35	`.........LKEKLLKEASKADNRGVCYLSRIPPHMDHVRLRHILAQYGELGRIYLAAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQIGGKKKREQKLNMVLSAAKREKDFYLSKIEKSRAMTEIDA-QEESGSNAEAAPVFPPRAIFQFRQKKSIENETSQSKPGLSTDFLASVFGG......................................................................................................................................................................................`	265
60	-15.000	`[T] KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains`	`ali follow..`	12	262	`.........SEHSSAATIDQQAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQAESAIRIGNRRVSIEEKRGNNDNGRPAMR..........................................................................................................................................................................................................................................................`	367
61	-13.500	`[TR] KOG4019 Calcineurin-mediated signaling pathway inhibitor DSCR1`	`ali follow..`	11	2	`......................................................................................................EEVDLQDLPSATIACHLDPRVFVAKFESLFRTYDKDITFQYF-------KSFKRVRINFSNPFSAADARLQLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKQFLISPPASPP..................................................................................................................................................`	114
62	-13.500	`[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins`	`ali follow..`	14	79	`..................................EDFFEDLFEELGKFGEIESLNICDNL-ADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREAT.............................................................................................................................................................................................................................................................`	153
63	-13.300	`[R] KOG4198 RNA-binding Ran Zn-finger protein and related proteins`	`ali follow..`	12	40	`..EIHEICWVI---DGKTLEKQHCESCSIR-RHGICGSSSLTEAIFTLDN------IQERLNFQGKPFTFVVMNGPPITESKAIELSPSDAPYITKGLTQCWRRSFYAERSKIVHVAGLTNDVTQLELESWFTNHGVHPVALWTLKTPEPYKSTGTGFVLFASHEDAADALA-FNGYCLGDRMLEIIPSSTKVLDKAS.....................................................................................................................................................................`	329
64	-13.200	`[R] KOG1855 Predicted RNA-binding protein`	`ali follow..`	12	259	`.........DTEPQGPNEIDTLDPSLIPSEELAAEITDA-VEFYFSN--SILKDAFLLKHVRRNKEGF-VSSFKRVRQGDAVRRKSRKIELNGTKVRRIEPLPSFDETMPSRTIVACDLPLDLTIEKVSDLFSPCGEIALIRILKPGMAIPVDKECALVEYLESSSARDARHLNG............................................................................................................................................................................................`	450
65	-13.100	`[A] KOG4213 RNA-binding protein La`	`ali follow..`	14	11	`.............................AALEAKICHQ-IEYYFG------DFNLPRDKQIKLDEGW-MIKFNDFNVIVEALSKSKAELMDKTKIRLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ--MRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKVE..............................................................................................................................................................`	202
66	-13.000	`[K] COG5175 Transcriptional repressor`	`ali follow..`	14	26	`.................SEDEEDYCPLCIEPMD--ITDKNFFPQF--YNNIRQ----NPELNGRRRKYD-VRYVSPEELKMERAKLARKEKERKHREKERKENEYTNRKHLSGVYVVGINPPVPYEEVEKYFGQYGKINKIVVNRKTPHSNNTTS--YITFGSKDDAARCIAQVDGTYMDGRLIKAAYGTTK...........................................................................................................................................................................`	233
67	-12.800	`[A] KOG4676 Splicing factor, arginine/serine-rich`	`ali follow..`	13	24	`...............GGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFDDSPLPVSSRVCFVKFHDPDSAVVAQH-LTNTVFVDRALIVVPYAEGVIPDEAKAL..........................................................................................................................................................................................................................................................`	122
68	-12.200	`[J] KOG2314 Translation initiation factor 3, subunit b (eIF-3b)`	`ali follow..`	17	1	`..................................................MAAVVDIDVLTAQLGINWSDVNLDSIPPGNDFGIESDDESVYQD-------DQSEFDTGFGNIIVVDHL-PVVPKEKVKKIYNQLGVIKENGLMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSIFAVNMFDDFDRLMNVKEE..................................................................................................................................................................`	154
69	-11.700	`[A] KOG4008 rRNA processing protein RRP7`	`ali follow..`	10	39	`.................KKDPSKENSIIVSNIPAFVGEGVVLAIIDQFASFEVEESFVDNSLSQGQLTMSITFDKPEAVIQTLALCQDVGLKDSTTLYRKLFPSEEQIQEMADTYVERYDTEQTEARKYSEPDEDGWITDVPLIGGLNNKKKKVDLAYYTFQIKKNRQEKAQELLKKFEEDRK-RITQLKQARN.........................................................................................................................................................................`	257
70	-10.800	`[O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase`	`ali follow..`	22	2	`....................ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMAKKARSNPQVYAGRIQMLLRSDVVPMTAENFHEIPQFMCQGGDFTNHNGTGYGF-NFILKHTGPGLLSMANGPNTNGSQFFLTCDKTD...........................................................................................................................................................................`	256
71	-10.200	`[R] KOG2891 Surface glycoprotein`	`ali follow..`	18	21	`.........................SLYLKPLGKSVSNLEIMDKLGAE-KFLLLKVSKSTVN-------TIRLEERKRLRAAIQRLDGISLRSESFRVRCAESKDKAGERPDTIHISHLPVKPSENIFKRIFEKFGRVRMVDIPICDPYRKSMQA-GYVQFEEYSSFVRAMDEFRGNKLVRKFICVSFDKQKHLSDSNIQRR.................................................................................................................................................................`	274
72	-9.710	`[AR] KOG2193 IGF-II mRNA-binding protein IMP, contains RRM and KH domains`	`ali follow..`	19	2	`........................NKLYIGNLNESVTPADLEKVFAEHKISYSGQFLVK------SGYAFVDCPDEHWAMKAIETFSGVELQGKRLEIEHSVPKKQRSR---KIQIRNIPPQLRWEVLDSLLAQYGTVEN----CEQVNTESETAVVNVTYSNREQTRQAIMKLNGHQLENHALKVSYIPDEQIAQ.......................................................................................................................................................................`	161
73	-9.370	`[T] KOG2591 c-Mpl binding protein, contains La domain`	`ali follow..`	7	2	`..........................LLFVEVASK--NPNAKVWQEIAPGNTDATPVTHGTESSWH---EIHPEGSEDICKEYEVMYSSSCNTTGIEESTDGMILGPSHKRCIVILREIPETTPIEEVKGLFKNCPKVISCEFAHNSN---------YITFQSDTDAQQAFKYLREKTFQGKPIMARIKAIN...........................................................................................................................................................................`	176

FFAS is supported by the NIH grant R01-GM087218-01

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