FFAS03 results for KOG0226

Query: [R] KOG0226 RNA-binding proteins, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300`
#	Score	Template	Links and tools	%id	First	`MANLDDELALFESELAELEQASSNSEEPASSQTHVGYDNATISAGPTTSESSAATSSAQVIQPSLLAAPPFIPIAATIAVSPFINPALGRLPTMPPVPPSIFMPPQLRAAPIMFPPRVLGIPAPATIEGAPALYETPAVNAIPQELLRTQALQSDIDKMNFKKQTDPFKKKIKEQQAKKKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKERNIDVIKQKRKQKKELGIL`	Last
1	-97.800	`[R] KOG0226 RNA-binding proteins`	`ali`	100	1	`MANLDDELALFESELAELEQASSNSEEPASSQTHVGYDNATISAGPTTSESSAATSSAQVIQPSLLAAPPFIPIAATIAVSPFINPALGRLPTMPPVPPSIFMPPQLRAAPIMFPPRVLGIPAPATIEGAPALYETPAVNAIPQELLRTQALQSDIDKMNFKKQTDPFKKKIKEQQAKKKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKERNIDVIKQKRKQKKELGIL`	302
2	-54.100	`[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19`	`ali follow..`	15	1	`...........................................................................................................................MESRHFATALVFLASKGFVDILYWVYRFQASSMAFCTKL---GGHWKQGVNVPVS--------------SMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLPLSLDESIEEAEK....`	158
3	-50.100	`[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)`	`ali follow..`	14	112	`................................................................................SPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPII--------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV.`	324
4	-49.300	`[A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)`	`ali follow..`	13	122	`.......................................................................................ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS................`	380
5	-48.100	`[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)`	`ali follow..`	13	115	`......................................................................................................KADESKATGDGLSQLGKGGAVLMVCRICHKKGDHWTSKCPYKDLAAPTDVFIDKPPTGESSTMSAAPGTGKAAYVPPS--MRAGADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRPT..................`	294
6	-48.100	`[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)`	`ali follow..`	17	133	`................................................................................SPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQAEKNRLAAM-------ANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQE.....`	341
7	-47.300	`[AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)`	`ali follow..`	20	2	`............................................................................................EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQ---------------KKDTSNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLS....`	190
8	-47.200	`[A] KOG0131 Splicing factor 3b, subunit 4`	`ali follow..`	16	10	`..................................................................................GANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKS------------------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAER.......`	205
9	-46.500	`[A] KOG4212 RNA-binding protein hnRNP-M`	`ali follow..`	13	2	`............................AAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEVGEVTYVELLMDA-EGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHG..`	300
10	-46.000	`[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15`	`ali follow..`	24	3	`......................................................................................................................................................................................................MTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRRNQSYEYTERTDR.....`	101
11	-45.600	`[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)`	`ali follow..`	15	2	`................................................................................EKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQS------------SENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLS..`	207
12	-45.400	`[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)`	`ali follow..`	16	1	`.......................................................................................MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPS-----------------LRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYI.`	195
13	-43.800	`[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)`	`ali follow..`	10	490	`LAELDLVLEKVNSQVAHRAIRPQKKVSEKPAPAPKSKQDHIQKRTSGGVKGDDGGFKAPLPPSNAKSSSAVSSSNASSTPAPGSFAVQKAAPGTEDARTIFVSNLDFTTTEDEIRQAIEGVASIRFARKANS--DLVHRGFAYVVMENDQKAQQALL-KDRVPVKGRPMFISANDPEKRVGFKFST------------TLEKSKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHK-DGKPKGIAFVDFDTEASAQKCVASGDKLMLRERELEVALSNPPVKKDKSHGKPAAIGAS....`	777
14	-43.700	`[K] KOG4210 Nuclear localization sequence binding protein`	`ali follow..`	9	102	`..........................................................................TINTPTGDESGEVVKKKKKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEAAKNSNAMKNKGFCYMFFKNVEQMKAVLE-LSESHLNGRNMLIKDSENYSGR-------PDKDDLVAMSKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRN.....`	333
15	-42.200	`[A] KOG4207 Predicted splicing factor, SR protein superfamily`	`ali follow..`	22	11	`.......................................................................................................................................................................................................DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEPHTKAPRGFAFVRFHDRSDAQDAEAAMDGAVLDERELRVRMARYGRRDLPRSSQEEPRGRSWG..`	111
16	-42.100	`[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)`	`ali follow..`	9	1	`..................................................................................MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSE---------------KNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTCSSPMVVKFADTQKDKEQKRMAQQLQQQ.....`	204
17	-41.700	`[R] COG0724 RNA-binding proteins (RRM domain)`	`ali follow..`	14	118	`..............................................................................................................................TMNCPFKTILSELSALEDPATNEGGVEAASEEKAGQVGGAGSIPGQYVPPSRRAGARDPSSDAYRDS---RERDDMCTLKIMQVNENADENSLRELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPKVKE.................`	274
18	-41.300	`[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)`	`ali follow..`	9	41	`....................................................................................GNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-------SRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAEAQAAINALHGSQTASSSLVVKFADTDKERTMRRMQQMAGQ......`	247
19	-41.200	`[R] KOG0110 RNA-binding protein (RRM superfamily)`	`ali follow..`	10	648	`..................................................................VKPEEKPIVNDAKPDEEDSRAEDADDEPEPNTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRDPEKSLGYGFIQFKKSSVAEHALKNLQLTHIDGNPVELKRSDRVLKTQDNDGAQRRLASQK----KQTGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTDAHRGFGFVDYMSKAEAKRAFDALSASHLYGRRLVLEWSANDDNQDVEELRKRTAA......`	881
20	-41.000	`[A] KOG0120 Splicing factor U2AF, large subunit (RRM superfamily)`	`ali follow..`	9	70	`..........................................................................ASVVPDTPQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQVLACQINLDKNFAFLEFRSIDETTQAMA-FDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSSG-PDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSVM.....`	301
21	-40.700	`[R] KOG0118 FOG: RRM domain`	`ali follow..`	9	152	`............................................................................GQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGD--PNSVLRFAFIEFTDEEGAMTALN-LSGTMLGFYPVKVLPSKTAIAP-----VNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLG-DYQHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSPSKTPVRPRSPRHPMH.........`	358
22	-40.600	`[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)`	`ali follow..`	13	2	`.....................................................................................SGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNR---HGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPT-----RRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADV-------QKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRG..`	201
23	-40.400	`[R] KOG4454 RNA binding protein (RRM superfamily)`	`ali follow..`	14	2	`...............................................................................................................................................................................................EIKPTPSPPEERTIYVANFSEEVDEELLEELFIQAGPVVKVILRDV--RDSNAKFALVEFEDELSVLFAIELMNGVRLFNQELQVKPRNGTNQEELYKRKKGEIEER....`	106
24	-40.400	`[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)`	`ali follow..`	14	12	`................................................................................................................................................EFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKSEKRRR.......`	165
25	-40.300	`[D] KOG2186 Cell growth-regulating nucleolar protein`	`ali follow..`	24	404	`......................................................................................................................................................................................................DIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPE-KRMYNRIVVCNLASEKPGKAGKEQDM..........`	496
26	-39.600	`[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)`	`ali follow..`	15	2	`...........................................................................................................................................................FASVELSSYRDQHFKGSRSEQERSL-------------------RDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGRQYGRGK..........`	119
27	-39.400	`[R] KOG4733 FOG: RRM domain`	`ali follow..`	11	26	`.............................................................QSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDP--------------------------TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYI.`	238
28	-39.100	`[A] KOG4209 Splicing factor RNPS1, SR protein superfamily`	`ali follow..`	10	1	`.....................................................................................................................MSDNDIIDDDVLNIEDMTGDDADLSAIELNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQS----------LLTPEEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNAL-AMTDSLLRGRQIKVDPKRTNKPGMSTTNRPPFRGR.....`	171
29	-38.600	`[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)`	`ali follow..`	10	97	`..............................................................................AFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS-------GKGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHGA-------------------------AIRVKELSPTVSNEMLYHAFSHFGDVERAVHIVDE-KGRPTGEGIVEFERKPNCNEAMAAIRDKVFSPKPLICEVLEPRDEDDGLAERMIPRTPG....`	287
30	-38.100	`[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	18	8	`..............................................................................................................................................................................KLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQL....`	131
31	-36.100	`[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)`	`ali follow..`	26	2	`..........................................................................................................................................................................................................SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARR-----PPGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRG....`	92
32	-36.000	`[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)`	`ali follow..`	26	12	`..............................................................................................................................................................................................HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD-PTPIIDGRRANCNLASLGRPRPPLPYAV..........`	112
33	-34.900	`[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B`	`ali follow..`	14	2	`.........................................................................................LTADIPPNQSIYIQNLNERIKKEELKRSFSQFGRILDVVALK---TPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDA-----KPGIAFVEYEDDVQASIAMQPLQGFKIPQNPMVISFAKK.....................`	232
34	-34.700	`[R] KOG1457 RNA binding protein (contains RRM repeats)`	`ali follow..`	9	13	`.....................................................................................................................................STGTGSGAGSGGALEEEPQNLGFGRGQSCELEAGIHRGIIQWDHPPPPCHRHHHHH-LFVHELKTRPGVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLT----ARQPVGFVIFDSRAGAEAAKNALNGIRFDPQTLRLEFAKANTKMAKSKLMATPNPSN....`	187
35	-34.500	`[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)`	`ali follow..`	26	2	`..........................................................................................................................................................................................................VRVYIGRLPNRASDRDVEHFFRGYGKLSDVIM--------KNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGYNEERSGSGFRGRE....`	89
36	-34.200	`[R] KOG4208 Nucleolar RNA-binding protein NIFK`	`ali follow..`	18	3	`......................................................................................................................................................................................................AFSRSAGPILSLNP-QEDAELQKEVAQCDTVTRFRLSRKKRTGNSKGYAFVEFESEDVAKIVTETMNSYLFGERLLECHFMPPEKKMESISKTNHRMSTK....`	101
37	-34.100	`[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	9	136	`............................................................................................................GRSLAANEMLSKLARTAPYYKRNRPHICSFWVKGECKRGEECPYRHDKPNEPDDPLCEQNIKDRYYGRNDPVAEKIMKRAASLPTLEPPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIALVPR------QQCAFVQYTKRNAAELAAERTNKLVIQGRKVSIKWAHSQAKQGTAAKTDRRFDLA....`	320
38	-33.800	`[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	18	11	`......................................................................................................................................................................................................PEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELN....`	107
39	-33.600	`[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)`	`ali follow..`	12	1	`....................................................................................................................................MESNHKSGDGLSGTQKEAALRALVQRTGYSLVQENGQRKYGGPPPGWD---------------AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRVGGIPKTKKREEILSEM`	156
40	-32.100	`[A] KOG1190 Polypyrimidine tract-binding protein`	`ali follow..`	11	261	`.TSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-----KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ----KDRKMALIQMGSVEEAVQALIDLHNHDLENHHLRVSFSKST....................`	549
41	-31.400	`[A] KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1`	`ali follow..`	10	28	`................................................................................ARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN-REHELDGKKIDPKVAFPKRTQ---------------AKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEI-HFHEINGKMVECKKAQPKEVMLPVQLNKSRAAAARNL.`	231
42	-31.000	`[K] KOG1548 Transcription elongation factor TAT-SF1`	`ali follow..`	12	42	`....................................................................................................................................KMNKAGSTGAEVSDVTAEATEGKE-SSNGEDRHTKRLYESTSAEGYPSGSRNKKSKS-ENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKIKIYRT-EDGTPKGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGG....`	212
43	-30.800	`[A] KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins`	`ali follow..`	14	4	`..........................................................................................GTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRYTREGRPSGEAFVELESEDEVKLALKK-DRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDT------ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL-KKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQ....`	205
44	-30.000	`[AR] KOG1365 RNA-binding protein Fusilli, contains RRM domain`	`ali follow..`	8	181	`ARGLDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLALKRHRNF-------LSRYIEVYKAGLDEFMHVATGSSTEAMEFVSANAIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRT-DGRPTGDAFVQFETEEDAQQGLLK-HRQVIGQRYIELFKSTAAEVQQVVKRCNLINSSPAVAN-EKKKDCVRLRGLPYEATVQHIVTFLGDFATMVKVHMVYNN-QGHPSGEAFIQMINEQAASACAAGVHNNFMSKRYIEVFQASAEELNLHHLVGQQHQVP.....`	485
45	-29.700	`[D] KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins`	`ali follow..`	10	162	`..........................................................................VPRKRPNTAGRVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYT-----ACKSRGFVMISYYDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENP---------------SEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIRE-----TPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLER....`	360
46	-27.500	`[R] KOG0151 Predicted splicing regulator, contains RRM, SWAP and RPR domains`	`ali follow..`	13	88	`......................................................................................................................VKDQRIRDEERSKEMEKGKTRNIHFVEELKREQEIRERRNQDRENSRDHNSDNTSSSRFDE--LPDYFDPSGRLGSLDDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPREKRRERHCGFVAFMNRADGEAAKEKMQGIIVYEYELKIGWGKVVF...................`	254
47	-26.600	`[A] KOG0533 RRM motif-containing protein`	`ali follow..`	20	70	`......................................................................................................................................................................................................DSKVIRVNISNLAPTVISSDLEELFGDYR-LSSVSVNFNE-HGDSLGTGDISL-TKRDAERLVQKFSGVALDGKIMKFAVIDSSNMAGRV..............`	156
48	-26.200	`[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)`	`ali follow..`	14	350	`..................................................................................................................................................SKEDGRKFDFDACNEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVGKKTSDKRDSDGKK....`	501
49	-25.500	`[A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)`	`ali follow..`	12	48	`....................................................................................................................................................EDPKDTPLPKTVETRQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGG....`	197
50	-24.700	`[R] KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains`	`ali follow..`	4	219	`............................................................................................PGVPSNKLAILNMPNDVDNTKITLSLGKCGYLVRTMTKFDKNTKQIRTFAFVEFSNRETAEQWMTDYEGWLTLDDGRTLAVEYAKGDPISKDQSMELEKLGAHMVGMTPCDTLLIRGLPDGINNSLIFDSLGALVCL---SSISMIKLSESKRFAYLQMKSADEAKMLLNLTYKSRIKDKDVQVSWCR......................`	439
51	-24.500	`[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit`	`ali follow..`	12	38	`...................................................................................................................................................GPTESAASGGGGGGTPSADGAAGPGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGDLQEVKFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQFESLQKTRPVP.....`	189
52	-24.000	`[T] KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains`	`ali follow..`	12	143	`....................................................................KKEVEEVIPQVVQPTEQVDEVAEPVTIPTQQPEAKQTTENTVKKPERAVANGHPKTQEDNVVNDKSNGVDAPKKSFAHIVQDLAQNGATFNAKASPAKPKSKPVTKPSAARESKAPAPVSEHSSAATIDQQAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQKESAIRIGNRRVSIEEKRGNNDNGRPAMRNGGYRNDNG..`	376
53	-24.000	`[AR] KOG0109 RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains`	`ali follow..`	11	314	`............................................................................................................GHRAGDPLSFQAVGKVLECDIIK--------NYGFVHIEDKTAAEDTIHNLHHYKLHGVNINVEASKNKSKA---------------------STKLHVGNISPTCTNQELQAKFEKYGPVIECDIV--------KDYVLIHFIHMECCPQARLRTAPGMGDQCGCYQCKKEGHWSKECPVDRTGRVAD.....`	465
54	-23.700	`[R] KOG1995 Conserved Zn-finger protein`	`ali follow..`	12	274	`....................................................................................................................................................................................................DDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGNIKIYTD-EKGNYKGDACLAYEDPSAAHSAGGFFNNYEMRGNKISVTMAEKSAPRAPTFDQS..........`	382
55	-23.200	`[K] KOG2068 MOT2 transcription factor`	`ali follow..`	14	63	`............................................................................................................................................................EKIVGMTVDQERLASEGNMDRKKIQKSKPKSSDGRKPLTSVRVVQRNLVYIVGLPLNLADEDLKEYFGQYGKVLKVSMSRTQQFPNNTCSVYITYGKEEEAIRCIQSVHGFILDGKALKACFGTTK....................`	196
56	-22.700	`[J] KOG0129 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	10	454	`................................................................................................SRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAKSYFPPKGYAFLLFQDESSVQALIDACIEED----CVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISA-RFVQLQHGEIDKRVEVKPYVLDDQLCDECQGAR.....`	657
57	-21.900	`[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins`	`ali follow..`	17	79	`....................................................................................................................................................................................................................EDFFEDLFEELGKFGEIESLNICDNL-ADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRG..`	165
58	-21.000	`[A] KOG1996 mRNA splicing factor`	`ali follow..`	11	125	`...........LERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSMGGAAIAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEPDRPRSPTGPSNSFLANMGGTVAHKIMQK--------YGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKGEAQDASKKSDSNPLTEILKCPTKVVLGEVDEDLEVE-TKEECEKYGKVGKCVIFEIPGAPDDE---FLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDK...................`	395
59	-20.800	`[K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)`	`ali follow..`	10	1	`.................................................................................................................................................MQSEESHELTDGISEEKESKETMKSQKADRKKKKLKEKLLKEASKADNR----------CYLSRIPPHMDHVRLRHILAQYGELGRIYLAAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQIGGKKKS...........................`	143
60	-20.100	`[R] KOG4307 RNA binding protein RBM12/SWAN`	`ali follow..`	16	862	`................................................................................................................................................................................................ELIKSIGPRGTVLSCNGFPKDVTLEDVVEFFNDY-EPDRNSIIRRGDDGVMTGECMLACQNQENARRASMDLDGQKLRNSVISV..........................`	945
61	-19.700	`[A] KOG4676 Splicing factor, arginine/serine-rich`	`ali follow..`	16	34	`...........................................................................................................................................................................................................VIQVTNVSPSASSEQMRTLFGFLGKIDELRLFDDSPLPVSSRVCFVKFHDPDSAVVAQ-HLTNTVFVDRALIVVPYA......................`	111
62	-18.700	`[J] KOG2314 Translation initiation factor 3, subunit b (eIF-3b)`	`ali follow..`	14	41	`..........................................................................................................................................................................................ESVYQDDQSEFDTGFGNIIVVDHL-PVVPKEVVKKIYNQLGVIKGLLMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSIFAVNMFDDFDRLMNVKEE...........`	154
63	-18.100	`[TR] KOG4019 Calcineurin-mediated signaling pathway inhibitor DSCR1`	`ali follow..`	11	2	`.................................................................................................................................................................................................EEVDLQDLPSATIACHLDPRVFVAKFESLFRTYDKDITFQYF------KSFKRVRINFSNPFSAADARLQLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKQ.....`	104
64	-15.700	`[A] KOG4213 RNA-binding protein La`	`ali follow..`	15	53	`...............................................................................................................................................IKFNRLNRLTTDFNVI--EALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKVEAKL....`	205
65	-15.300	`[R] KOG4198 RNA-binding Ran Zn-finger protein and related proteins`	`ali follow..`	22	240	`......................................................................................................................................................................................................AERSKIVHVAGLTNDVTQLELESWFTNHG--VALWTLKTPEPYKSTGTGFVLFASHEDAADAL-AFNGYCLGDRMLEIIPSSTKVLDKASDILIPFPSSK....`	339
66	-14.900	`[R] KOG2135 Proteins containing the RNA recognition motif`	`ali follow..`	12	362	`......................................................................................................................................................................................................NRDNCTLQVAKIPPENTIAKLNEHFATFGTVDNIQVRYNGEIDS----ALVTYASKFDAGKAYKSPT-PVLNNRFIKVFWHNPGGEGSENATGKPSSPTS....`	457
67	-14.800	`[R] KOG2295 C2H2 Zn-finger protein`	`ali follow..`	4	314	`.VSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNLAPSITRSEIEAVCNRFSGYLRVAIADPLVERRWYRRGWITFMRDVNIKEICWGLNNQRLRDCEMGAIVNRDLSRRVRPANGITAHKQVVR..`	612
68	-14.400	`[O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase`	`ali follow..`	23	2	`......................................................................................................................................................................................................ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR...................`	86
69	-12.900	`[K] COG5175 Transcriptional repressor`	`ali follow..`	19	84	`............................................................................................................................................................ENVRYVTLSPEELKMERAKLARKEKERKHREKERKENEYTNRKHQKNLVYVVGINPPVPYEEVEKYFGQYGKIN--KIVVNRKTSPGYG--YITFGSKDDAARCIAQVDGTYMDGRLIKAAYGTTK....................`	233
70	-10.900	`[O] KOG0415 Predicted peptidyl prolyl cis-trans isomerase`	`ali follow..`	17	183	`..................................................................................................................................................YEMLTDQIALDEKEDEDEGKTAEEIAEELQQREMAEQAQILEMVGDLKDADEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFSQSVSQNYKYKPKSQQQEAP....`	334
71	-10.400	`[A] KOG4008 rRNA processing protein RRP7`	`ali follow..`	8	38	`..................................................................................................................................................................................................LKKDPSKENSIIVSNIPAFVGEGVVLAIIDQFASFEVEESFVDNSLSQGQLTMSITFDKPEAVIQTLALCQ.....................................`	114
72	-9.960	`[R] KOG2891 Surface glycoprotein`	`ali follow..`	16	81	`................................................................................................................................................ELDERKRLRAAIQRLDGISLRISGFSESFRVRCAESKDDFPTRHDWDSRNMDEMKAGE-TIHISHLNVKPSENIFKRIFEKFGRVRMVDIYRKSMQADINGMGYVQFEEYSSFVRAMDEFRGNKLVRKFICVSFDKQKHLSDSNIQRRERIRKKF...`	281
73	-9.660	`[S] KOG4176 Uncharacterized conserved protein`	`ali follow..`	15	4	`.....................................................................................................................................................................EETQQKVNKAKKADKKQRRCLAIIKSDCEVSPSAEPTPYLAVLNLSNGLTEECLLTAAATGGKVIQVVML------PGKSYCFFICASLEDSQLIYEGMHNISTIGQQ.............................`	108
74	-9.190	`[AR] KOG2193 IGF-II mRNA-binding protein IMP, contains RRM and KH domains`	`ali follow..`	19	3	`...........................................................................................................................................................................................................KLYIGNLNESVTPADLEKVFAEHKISYSGQFLVK------SGYAFVDCPDEHWAMKAIETFSGVELQGKRLEIEHSVPKKQRSRKIQ............`	84
75	-9.090	`[R] KOG1855 Predicted RNA-binding protein`	`ali follow..`	13	322	`.........................................................................................................................................................SSFKRVRQLTREWKVVGDAVRRKSRKIELNDVGTKVRRIEPLPSFDETSRTIVACDLPLDLTIEKVSDLFSPCGEIALIRILKPGMAIPVKECALVEYLESSSARDARHLNG.....................................`	450

FFAS is supported by the NIH grant R01-GM087218-01

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