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Query: [G] KOG0799 Branching enzyme, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRFTKKPFYSAALLILSCFSRNSSYLDPKLSVDRELAVYKRITEALRTVDRSCEEQGFYCKRPETQHVDCGRVLVGDKIQLRAFQVYLQSLTGSNRIPLIENSFLNLTCSAIKSRIIPKTAQFKPLKLNGTAFARIVFADYEFIEKQVQASYHPQNVFCFAIDANSSAEFQRKMKKLEQCLPNVVVLPVTESYDSKGHNINLAHYNCMKKLESLRGWGYLMLLQNHDVITKSVYELDRIFELLGGVNDVFMSREIPERRKKHLKWDLKSLKLFRNDSKNSDYELEISSGSVHSSLSRAAVKWLVEEVDLSIFIDQWNQTDYGADEQFISTFQMSPDLKMPGHFTNECIHNDTAIVTISRLARWVPIYLDRAAHCATGTVRHDICIFGIEDFRAISKFPILNMLPAFDYSIIECTAELLHNRTYLGQVDQKIEKNLYENLVSVQYHKNHRNPDYKLNCTSDFPPWNYSNYLLast
1 -157.000[G] KOG0799 Branching enzyme  ali  100  1MRFTKKPFYSAALLILSCFSRNSSYLDPKLSVDRELAVYKRITEALRTVDRSCEEQGFYCKRPETQHVDCGRVLVGDKIQLRAFQVYLQSLTGSNRIPLIENSFLNLTCSAIKSRIIPKTAQFKPLKLNGTAFARIVFADYEFIEKQVQASYHPQNVFCFAIDANSSAEFQRKMKKLEQCLPNVVVLPVTESYDSKGHNINLAHYNCMKKLESLRGWGYLMLLQNHDVITKSVYELDRIFELLGGVNDVFMSREIPERRKKHLKWDLKSLKLFRNDSKNSDYELEISSGSVHSSLSRAAVKWLVEEVDLSIFIDQWNQTDYGADEQFISTFQMSPDLKMPGHFTNECIHNDTAIVTISRLARWVPIYLDRAAHCATGTVRHDICIFGIEDFRAISKFPILNMLPAFDYSIIECTAELLHNRTYLGQVDQKIEKNLYENLVSVQYHKNHRNPDYKLNCTSDFPPWNYSNYL 470
2 -6.950[M] COG0463 Glycosyltransferases involved in cell wall biogenesis  ali follow..  11  4..................................................................................................................................VSVVTGFYNRCEHLERTIESILNQSDFELIVFDDASTDGTASRLLELKEKYPRFRFIIHEEN---------KGFVKGLSEAISGAKGQYIAVQGSGDVSLPR--RLELQVEFLDANPSVGAVGGAIYNIQEDTGTRNPQ---RFEKPIATFDDLLTSNPFTHGEV-------MYRLDLYKSIGGYRSGFTFAQDRDLWLRMAKKADL..................................................................................................................................... 193
3 -6.610[T] KOG1701 Focal adhesion adaptor protein Paxillin and related LIM proteins  ali follow..  15  418....................................................................RCGENVVGEGTGCTAMDQV-------------VDCFTCIICNNLRGQPFYAVE----EPCYINTLEQCNVCSKPIMERILRATYHPHCFTCFTVDAGGLEDFHKKFPRCSVCKEPIM-QEETVRIVALDRDFHVHCYRCCGGLLSEGDNQGCYPLDGHILCKTCNSARIR........................................................................................................................................................................................................................................ 602
4 -6.460[S] COG4461 Uncharacterized protein conserved in bacteria, putative lipoprotein  ali follow..  13  1MRWIGVLVTALVLSACAANPPANT-----------------------------------TSPTAGQSLDCTKPATIVQQLV---------------------------CHD--------RQLTSLDHRLSTAYQQALAHRRSAALEAAQSSWTMLRDAC-DTDPRTQEAYQTRLVQLAI................................................................................................................................................................................................................................................................................................... 112
5 -6.410[S] KOG4459 Membrane-associated proteoglycan Leprecan  ali follow..  11  1MAVRALKLLTTLLAVVAAASQAEVESEAGWGMVTPDLLFAEGTAAYARMERALRSRAALRALRLRCRTQCAADFPELDPDWSPSPAQASGAAALRDLSFFGGLLRRAACRRCLGPPAAHSLSEEMELEFPYNYLQVAYFKINKLEKAVAAAHNPEHEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYEEQAITDHYIQVLNCKQNCVTELASHPSYNYLLLFFPNDEVMNQNLAYYAAMLGEEHTRSIGPRESAKEYRQRSL............................................................................................................................................................................................................... 370
6 -6.220[G] KOG3765 Predicted glycosyltransferase  ali follow..  9RKFLAASLSLLCIPAITWIYLFSGSFEDGKPVSLSPLESQAHSPRYTASSQRERESLEVRMREVEEENRALR-LSLAQGRAPSHRRGNHSKTYSMEEGTGDSENLRAGIVAGNSSECGQQPVVEKCETIHVAIVCAGYNASRDVVTLVKSVFHRRNPLHFHLDSIAEQILATLFQTWMVPAVRVDFYNEVSWIPNKHYSGIYGLMKLVLTKTLPANLERVIVL---DTDITFATDIAELWAVFHKFKGQQVLGLVENQSDWYLGNLWKN------HRPWPALGRGYNTGVILLLLDKRKMKWEQMWRLTAERELMGMLSTSLADQDIFNAVIKQ........................................................................................................................................ 344
7 -6.070[R] COG1216 Predicted glycosyltransferases  ali follow..  6..................................................................................................................................IGVVIVSYGHEQDVANLVDTFADQTGDRVVVVDNRKPWVLKDAVGERLE--KHGAEIINHDNGGFAAGCNVGAAH-------IVDDVDLLFFL-NPDTVIDDPT-LFNSLRRVDEQWAASTINSAGNALHISGLSWVTGLDEKPVEGSSEVTDISIASGAC-LAVRVDWWKRL--------------------EELYF.............................................................................................................................................. 185
8 -5.920[A] KOG3763 mRNA export factor TAP/MEX67  ali follow..  247LNRRSCMAATLRII-----LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELLDGNSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVK---KLKDPTLRFRLLKHTRLNVVAFLNELPKTQHCFSVNGKEVDGKSRDSLRAFTRTF--NDELFVRNASSEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNSAQAFTHLKAKGEIPEVAFMK............................................................................................................................................. 619
9 -5.870[S] COG3863 Uncharacterized distant relative of cell wall-associated hydrolases  ali follow..  10  1MKLKKRVSMFLVALTMCGGLFVTPAKAVKTTNYAEEIAALQPGTTPEEIMKSASQIA------KQQHVKQDVILKQFYKEITADKAEGDRLAKESGMSIMGGSSGTKKLPTSAK-------TNSYTAYYNHGHVGMYSAADKIVESVAYNARDVEDNSIVQTVSVSSSQKTAAADWAVSKVGDPY----SFNFVNNRNTGHDGAKNCSKLL-----WSAFLLKAGIDIPITSSSYTTTIMTIY................................................................................................................................................................................................................................... 245
10 -5.780[G] KOG2246 Galactosyltransferases  ali follow..  88......................................................................................................................VGPTNISHIFFSIA---GAAETWIDRSQYISLWWRNTTRGFVWLDEPVKIPENHSDVRFSI--PTRVSDPGWTRFKFSSSRAAVRIARIIWDSYRNVRW---FVMGDDDTVFFTE-NLVKVLSKYDHEQMWYI-------------------GNSESVEQDVMHAYDMAFGGGGFALSRPLAARLAAAMD--------RYFYFYGSDQRIASCISEIGVPF................................................................................................................................... 281

FFAS is supported by the NIH grant R01-GM087218-01
1 4 3 0 4 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.