current user: public
If you have questions about the server, please let us know.

Query: [U] KOG0935 Clathrin adaptor complex, small subunit, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNKLAYLEGIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLELast
1 -76.900[U] KOG0935 Clathrin adaptor complex, small subunit  ali  100  1MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNKLAYLEGIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE 142
2 -74.300[U] KOG0934 Clathrin adaptor complex, small subunit  ali follow..  42  1MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKIAVKAIEDSDMLQ 142
3 -64.900[U] COG5030 Clathrin adaptor complex, small subunit  ali follow..  38  1MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLEAGKNRIIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAEVVSGGLVLETNLNEIVLAAQNQMPKT 146
4 -64.300[U] KOG0936 Clathrin adaptor complex, small subunit  ali follow..  40  1MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLE 148
5 -56.900[O] COG5541 Vesicle coat complex COPI, zeta subunit  ali follow..  16  7AVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVGLFEKTWKTQNDILTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFYVPDKRTLLENYDQLVIVVDETIDDGVILETEPALIAARVTKGPVSE 157
6 -56.500[U] KOG3343 Vesicle coat complex COPI, zeta subunit  ali follow..  19  12TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEK-NIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGE.. 151
7 -54.300[U] KOG2635 Medium subunit of clathrin adaptor complex  ali follow..  17  2VLIAACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLKEAATRQHTFVETDSVRYVYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAFDEVVTLGYRESVNLAQIRTFTEMDSHEE 147
8 -44.400[U] KOG2740 Clathrin-associated protein medium chain  ali follow..  17  1MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEK-AADVENVPPVISTPHHYLISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPLATESNILKELIKPPTILR 141
9 -42.100[U] KOG0938 Adaptor complexes medium subunit family  ali follow..  16  1MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRV--NVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIEVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNTDSGTLKTFITQQGIKS 140
10 -40.700[U] KOG0937 Adaptor complexes medium subunit family  ali follow..  14  2SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILME-KEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEG... 139
11 -14.600[S] KOG0997 Uncharacterized conserved protein Sand  ali follow..  11  117..KHIFILSEAGKPIFSLHGNEDKLATLFGVIQALVSFVQMGQDAI-TSIHAGGIKFAFMQRSSLILVAASRSNMSVQQLQLQLGDVYSHMTKIFERRKNFDLRRLLSGSERLFYNLLA....................... 241
12 -9.840[T] KOG4107 MP1 adaptor interacting protein P14  ali follow..  9  19.VENTLLLSQEGALLAYSGYGDKDARITAAIASNIWAAYEKHGRNAFRLIDCENGHVAITQVASVLLCLYAKQTVGLGLLKQKAMSLASYLERPLKQISA.......................................... 124
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.