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Query: [U] KOG0936 Clathrin adaptor complex, small subunit, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNLPSFKLast
1 -90.200[U] KOG0936 Clathrin adaptor complex, small subunit  ali  100  1MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNLPSFK 193
2 -71.100[U] COG5030 Clathrin adaptor complex, small subunit  ali follow..  54  1MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLE--SNLIAGKNRIIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAEVVSGGLVLETNLNEIVLAAQNQMPKTKRSNAMPFSNTLSSFATR........................... 164
3 -70.700[U] KOG0934 Clathrin adaptor complex, small subunit  ali follow..  32  1MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTS------SFVDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKIAVKAIEDSDMLQENRLSPRGRDCSEPRSCHCT......................... 162
4 -64.300[U] KOG0935 Clathrin adaptor complex, small subunit  ali follow..  40  1MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHT------NFVEFRNFKIIYRRYAGLYFCICVDVNDNKLAYLEGIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE............................................. 142
5 -61.900[U] KOG3343 Vesicle coat complex COPI, zeta subunit  ali follow..  18  12TVKAILILDNDGDRLFAKYYDDTYPSVKEQK-------AFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKE............................. 169
6 -61.500[O] COG5541 Vesicle coat complex COPI, zeta subunit  ali follow..  12  7AVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVEKTFEKGLFEKTWKTQNDILTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFYVPDKRTLLENYDQLVIVVDETIDDGVILETEPALIAARVTKGPVSEAQAIVSDFKEMGFMNS-----FQKAREKITER............. 184
7 -53.000[U] KOG2635 Medium subunit of clathrin adaptor complex  ali follow..  13  2VLIAACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAAT--RQHTFVETDSVRYVYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAFDEVVTLGYRESVNLAQIRTFTEMDSHEERVFMQIKEAQEKAAKQA----MAEKAKELKRAQKEALSRGLKPS. 187
8 -52.900[U] KOG2740 Clathrin-associated protein medium chain  ali follow..  17  1MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQ-------EKAADVENVPPVISTPHHYLISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPLATESNILKELIKPPTILRSVVNSITGSSNDTLPTGQLSNIPWRRAGVKYTNNEAYFDVVEEID 188
9 -51.500[U] KOG0938 Adaptor complexes medium subunit family  ali follow..  11  1MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVI--------HARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIEVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNTDSGTLKTFITQQGIKSATKEEQMQITSQVTGQ-----IGWRREGIKYRRNELFLDVLEYVN 180
10 -48.400[U] KOG0937 Adaptor complexes medium subunit family  ali follow..  10  2SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPIL-------MEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETG-------APRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
11 -13.900[S] KOG0997 Uncharacterized conserved protein Sand  ali follow..  15  117..KHIFILSEAGKPIFSLHGNEDKLATLFGVIQALVSFVQMGQDAITS-------IHAGGIKFAFMQRSSLILVAASRSNMSVQQLQLQLGDVYSHMTKIFERRKNFDLRRLLSGSERLFYNLLAN--VSNNIFTFLTNSIRVFPLPTTIRSQITSAIQSNCSKIKNALVRMKKYSIHPADLRLIFNLVECSE 326
12 -9.180[U] KOG0862 Synaptobrevin/VAMP-like protein SEC22  ali follow..  7  1MVLLTMIARVADGLPLAAS--MQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKY.......................... 186
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.