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Query: [A] KOG1190 Polypyrimidine tract-binding protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTILast
1 -184.000[A] KOG1190 Polypyrimidine tract-binding protein  ali  100  1MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 550
2 -72.800[AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)  ali follow..  12  2.....................................................EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDDPYCFVEFHEHRHAAAALAAMNGRKI--MGKEVKVNWATTPSSQKKDTSNH---------------------------------------FHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTK---------------------------------------------------------------------QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQW-----------------YGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGF---NQTQSSAPWMGPNYGVQPPQGQNGSML-PNQPSGYRVAGYE. 373
3 -72.200[R] KOG0110 RNA-binding protein (RRM superfamily)  ali follow..  13  288..CYVGFKTKDMAKGMLKNKSFIKGKQVFFSPAAVDAGNAKWKHQQDSLSKEDDISESGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKGFGTVTYMMPEHALKAFNTLDGTDF--HGRLLHLLPSKDIEKNPKEDLDENDASLSFKEKKALKLKKNAQKPEGVRLDAFDEPAKKRSNTVILAKNLPAATEISEITPIFSRFGPIGRIVL---PSGVTALIEYCDPLEARQAFKKLAYSKFKNAPLYLEWAPEQVFTKTLSGEPVIPKSEPKPKEEVKPEEKPIVNDAKPDEED--------------------------------------------SRAEDADDEPEPNTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRLGYGFIQFKKSSVAEHALKNLQLTHIDGNPVELKRSDRVLKTQDNDGAQ--------------------RRLASQKKQTGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKAHRGFGFVDYMSKAEAKRAFDALSASTHLYGRRLVLEWSAND. 867
4 -70.800[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)  ali follow..  17  2.................................................NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDLGYAYVNFQQPADAERALDTMNFDVI--KGKPIRIMWSQRDPSLRKSGVGN-----------------------------------------VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDESKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK-----------------------------------------------------------------------------------EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFE-----------------QLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLERSKGFGFVCFSSPEEATKAVTEMNGRIV-GSKPLYVALAQRK. 371
5 -64.700[A] KOG4212 RNA-binding protein hnRNP-M  ali follow..  11  1...MAAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKYANPTKRYRAFITNIPFDVKWQSLKDLVKKVGEVTYVELLKSRGCAVVEFKMEESMKKAAEVLNKHSL--SGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFGINKMGGMEQTIERMGSGVERMGPAIERMGLSMERMVPAGMGAGLERMGPVMDRMATGLERMGANNLERMGLERMGRMGLERMGANSLERMGPAMGPALGAGIERM---GLAMGGGGGASFDRAIEMERGNFGGSFAGSFGGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEKSKGCGVVKFESPEVAERACRMMNGMKL-SGREIDVRIDRNA. 730
6 -55.500[A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)  ali follow..  13  2VMIISTMEPVSNGPTSNTSNGPSSNNRNCPSPMQTGA---------------TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDLGYGFVNYIDPKDAEKAINTLNGLRL--QTKTIKVSYARPSSASIRDAN-------------------------------------------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK------------SSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSGPVPPSACSPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS................................................................................................................... 380
7 -54.700[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B  ali follow..  18  2............................................................................................................................................................................................................................................................................................................................................................LTADIPPNQSIYIQNLNERIKKEELYCLFSQFGRILDVVALKTPRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMI-DAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK.. 232
8 -54.600[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)  ali follow..  12  1...........................................MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDKGCCFVTFYTRKAALEAQNALHNMKVLPG-HPIQMKPADSEKNNAVEDRK------------------------------------------LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPSRGCAFVTFTTRAMAQTAIKAMHQAQTMSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSV------NPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKSKCFGFVSYDNPVSAQAAIQSMNGFQI-GMKRLKVQLKRSK. 476
9 -54.400[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)  ali follow..  10  57..PPLTPEQQEALQKA-KKYAMEQSIKSVLVKQTIAHQQQQSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDKGFAFVEYEVPEAAQLALEQMNSVML--GGRNIKVGRPSNIGQAQPIIDQLAEEARAFN--------------------------------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP---------------------------------------------------------------------------------LLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPQPLGTLPQAVMAAQAPGVITVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLKQESTVMVLRNMIDDDLEGEVTEECGKFGAVNRVIIYQEKQIVKIFVEFSIASETHKAIQALNGRWF-AGRKVVAEVYDQE. 550
10 -51.600[AR] KOG1365 RNA-binding protein Fusilli, contains RRM domain  ali follow..  12  131......EDDVAIARAILDMDDELLEKTHQFVNIEYQPA------PILEDQEVGADGDNVVCRARGLPWQASDHHVAQFFAGLDIVPGGIALRRNGEVLVQFSSQESRDLALKR---HRNFLLSRYIEVYKAGLDEFMHVATGSSTEAMEFVS----------------------------ANAIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRRPTGDAFVQFETEEDAQQGLLK-HRQVIGQRYIELFKSTAAEVQQVVKRCNLIN-------------------------------------------------------------------SSPAVANAVEAPEEKKKDCVRLRGLPYEATVQHIVTFLGDFATMVKVHMVYNNSGEAFIQMINEQAASACAAGVHNNFMSKRYIEVFQASAEELNLHHLVGQQHQVPPPAPLGFMGQLPPPSPPISPIVPGQVTQLIIYGIHMSIGVPELVANFTTPEHTVDNVLFTRLCPGEAILTLRNRGAPPPQTSPLSQISQ-LSAPNFAAYSHHP. 603
11 -51.200[A] KOG0120 Splicing factor U2AF, large subunit (RRM superfamily)  ali follow..  12  70...................................ASVVPDTPQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQALDKNFAFLEFRSIDETTQAMA-FDGINL--KGQSLKIRRPHDYQPMPGITDTPAIKPAVVSSGV-------------------ISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSVMLQVPGLSNVVTSGPPTEVLCLLNMVTPD--------------------------------------------------------ELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHRRE................................................................................................................. 415
12 -49.100[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)  ali follow..  12  2...YIKMANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIP------MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDKGCAFLTYCERESALKAQSALHEQKTLPGNRPIQVKPADSESRGGSSCLRQPP----------------------------------SQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPSKGCAFVKYSSHAEAQAAINALHGSQT-SSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTG--------------------------LPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFG----------------FVSFDNPASAQTAIQAMNGFQI-GMKRLKVQLKRPK. 480
13 -44.800[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)  ali follow..  11  3...............................................GWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRVPFAFVRFEDPRDAEDAIYGRNGYDY--GQCRLRVEFPRTYGGRGGWPRGGRNG-----------------------------PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADV---QKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRP.............................................................................................................................................................................................................................................................. 220
14 -44.600[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)  ali follow..  12  4............................................................VYIGRLPNRASDRDVEHFFRGYGKLSDVIM--KNGFGFVDFQDQRDADDAVHDLNGKEL--CGERVILEFPRRKVGYNEERSGSGF-----------RGREPTFRKGGERQFSNRYSRPCSTRFRLVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDDLRDAMNKLQGEDLNGRKLKCTDETRDRSRSRSPRRRSRSRSPTRSRSPPARRRSPGSDRSDRKSRSASPKKRSDKRARSESKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSPRSGSASP..................................................................................................................................................................................................... 281
15 -44.500[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)  ali follow..  16  5...........................................................................................HKSGDGLSGTQKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCE-----------------------------------------IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCR------------------------------------------------------------------------------------------------LFVGGIPKTKKREEILSEMKKVTEGVVDVIVYKNRGFAFVEYESHRAAAMARRKLLPGRIWGHGIAVDWAEPEV------------------------------EVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKVL-DGSPIEVTLAKPV. 304
16 -44.200[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)  ali follow..  13  2......................................SGARRDNRRSNGRDDSSRVAKAENDRKPGRENRGGDEKRGNSNNAARSGGGGGAERGIAPAQQPYDNNGGHRSGGGGGRSG--GGGTSFNGAAFTESQLMDEVPKKKF----------------------------------TGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK---GFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHGAA-------------------------------------------------------------------------------------------------IRVKELSPTVSNEMLYHAFSHFGDVERAVHIVDPTGEGIVEFERKPNCNEAMAAIRDKVFSPKPLICEVLEPRDEDDGLAE-----------------------------------RMIPRTPGLSKERELGPRFPTPNSFKELYVVEQKRRAQLDEELRESRRRLESDMELAYQDY-QAQMLREDLQRRQ. 361
17 -41.200[K] KOG1548 Transcription elongation factor TAT-SF1  ali follow..  13  51..AEVSDVTAEATEGKESSNGEDRHTKRLYESTSAEGYPSGSRNKKSKSENSPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIARIKIYRTKGDALIVFFRSESVELAEQLFDDTEFRYGSGQKRVQKANIDYKKEKTVNKDVGGALKKKALRLRQQQMQQISSWDDVDEEVDDKRKKRFNKIVVLKHIFTLEEKDDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTLDDEEDEEK................................................................................................................................................................................................................................................................................ 354
18 -40.900[R] KOG0118 FOG: RRM domain  ali follow..  14  2.........................................................................AVVETGAAATAADAGGVVSSPPSSMTSQDSGVSSDDQ-----------------------------------------------NHHSRIDQVLRHDQGLYSKIGSHVARSDGVDGGESFKRDMRELQELFSKLNPMAEEFVPPSLNKQGG-GGFFTSAGSFFRNNGFAGTGNGGYGNENGGFRRKKSFGQGKRRMNAR-------------------------------------------------------------------------TSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPLRFAFIEFTDEEGAMTALN-LSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDERE---------------------MCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLYQHSTRIAFVEFVMAESAIAAL-NCSGVVL-GSLPIRVSPSKTP. 347
19 -40.800[D] KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins  ali follow..  12  131..GGMELDVESQDNHAVDASGMQISDRGAANAFVPRKRPNTA--GRVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAKSRGFVMISYYDIRAAHAAMRALQNTLL--RKRTLDIHFSIPKENPSEKDMNQG---------------------------------------TLVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRR-FHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTEVTNFYNQVGSHVANSPPGNWPIGSPVKGSPSHAFTRPHGLGMVRPVNSDNMPGLASILPAHPSSFHGFSPVSNDQGLLNHSNQTILNKGLMHNISYGQ-FSDMGINRNYNSAHGKANLGVSLPGNSSEQDFTGFGMSSMPTVPFGGSRGLQSVRPEPFAEQGRIHNHESHNQNQFIDGGRYHIDLDRIASGDEIRTTLIIKNIPNKYTYKMLVAEIDEK--CLPTDFKNKCNMGHAFINMVSPLHIVPFQQTFNGKIFNSGKVASLAYAE... 750
20 -40.400[A] KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins  ali follow..  12  4...................................................GTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRPSGEAFVELESEDEVKLALKK---DRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDT------------------------------ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFTGEAFVQFASQEIAEKALK-KHKERIGHRYIEIFKSSRARTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLN-PVRVHIEIGPTGEADVEFATHEDAVAAMS-KDKANMQHRYVELFLNSTAGASGGAYEHRYVELFLNSTAGASG............................................................................................... 389
21 -38.700[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)  ali follow..  14  543........KVKGDDGGFKAPLPPSNAKSSSAVSSSNASSTPAPGSFAVQKAAPGTEDARTIFVSNLDFTTTEDEIRQAIEGVASIRFARKANSRGFAYVVMENDQKAQQALL-KDRVPV--KGRPMFISANDPEKRVGFKFSTTLEKSK------------------------------------VFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKPKGIAFVDFDTEASAQKCVASGDKLMLRERELEVALSNPPVKKDKSHGKPAAIGASLEEDGPRKGHAAKLQLVPRAITNKTPQITARLDAMDVSEGTSTSQPLSND................................................................................................................................................................................................................................. 827
22 -37.000[R] KOG4307 RNA binding protein RBM12/SWAN  ali follow..  9  420.................................VFQAPVMTPIVPPVNKPMGAAAVEKFYIELTRLPTDLLRPAALEAFIHPTTLSSVKTVFGPGHTIIRLDSIADYATMMRRNGEQGIKIQQSDKKSFDTAIDGIPISPIRSPRRSPLRRDNRDRSRSRSPPRRRRRSRSPRRREEHTDPTRWCVQVTNVPFRMKDEELLEWFSEKVRPAKLTRTDGNASDRWVAEFSSESLMKRSFG--IRTLCTGRTLRLRYIDNAKADEILKIEDVYGEGKRQMNEEARLQHEVAEKANPPSFFNAPAATRGSGPMPPLNGTAPLPSGQQNGMNVPPPNGFNGAPMRGGFVPRGGNNFSQSRGGMMGRGGHG------------------------GGGGPQNFYQNGPNNFNNGPPEQQGQFRGNQGNDGGFRGGFRGGYRGRGGGRGGFQGGSRGDDSQPSQSELMELIKSIGPRGTVLSCNGFPKDVTLEDVVEFFNDYNSIRIRRGDDGVMTGECMLACQNQENARRASMDLDGQKL-RNSVISVR...... 946
23 -35.700[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)  ali follow..  13  114........................................................................................................................................................................................................................................................................................................................................................................TKADESKATGDGLSQLGKGGAVLMVCRICHKKSKCPYKDLAAPTDVFIDKPPTGESSTMSAAPGTGKAAYVP------------------PSMRAGADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKRGFGFVNFVSREDAQRAINKLNGYGY-DNLILRVEWATPR. 292
24 -35.300[A] KOG0131 Splicing factor 3b, subunit 4  ali follow..  16  10...........................................GANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDQNYGFIEYRSEEDADYAIKVLNMIKL--HGKPIRVNKASQDKKSLDVGAN------------------------------------------LFIGNLDPDVDEKLLYDTFSAFGVIASNPKITGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAER----------------------------------------------------------------------LLAATNPTAQKSRPHTLFAMGPPSSAPQVNGLPRPFANGSMQPVPIPAP-RQPPPPPPQVYQTQPPSWPSQPQQHSMVPPPMQFRPPQGMPPPPPPQFLNHQQ......................................................................................................... 307
25 -34.700[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)  ali follow..  16  124................................SKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIRSKGIAYVEFCEIQSVPLAIG-LTGQRL--LGVPIIVQASQAEKNRLAAMANNLQK-------------------------------GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDG................................................................................................................................................................................................................................................................................................ 329
26 -33.800[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19  ali follow..  10  19..VDILYWVRFQASSMAFCTKL-------------GGHWKQGVNVPVSSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNRGYGFVNFISEDSANSAISAMNGQEL--NGFNISVNVAKDWPSLPLSLDESIEEAEKKENKMMSRSVWKDP---------------------FVDAFLMKKKNAALNRKIWSRRSTILPEYV-VRIYNGKTHVRCKITEGKVGHKFGEFAFTR................................................................................................................................................................................................................................................................................................................ 235
27 -32.900[R] KOG4733 FOG: RRM domain  ali follow..  11  17..YYPQYQAKQSLVPAHPMAPPSPSTTSSNNNSSSSS------------NSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKGYGFVDFDSPAAAQKAVSALKASGV--QAQMAKQQEQDPTN--------------------------------------------------LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKF-----------------------------------------------------------------------------------ADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPT-----AAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQ................................................................................................................. 310
28 -32.700[K] KOG4210 Nuclear localization sequence binding protein  ali follow..  13  98...............................GEESTINTPTGDESGEVVKKKKKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEK-KNKGFCYMFFKNVEQMKAVLE-LSESHL--NGRNMLIKDSENYSGRPDKDDLVAMS-------------------------------KNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRN.................................................................................................................................................................................................................................................................................... 333
29 -32.100[R] KOG0226 RNA-binding proteins  ali follow..  11  2....................................................................................................................................................................................................................................................................ANLDDELALFESELAELEQASSNSEEPASSQTHVGYDNATISAGPTTSESSAATSSAQVIQPSLLAAPPFIPIAATIAVSPFINPALGRLPTMPPVPPSIFMPPQLRAAPIMFPPRVLGIPAPATIEGAPAAVNAIPQELLRTQALQSDIDKMNFKKQTDPFKKKIKEQQAKKKFVRSGGGQVWEDPSLAEWDENDFR----------------VFCGDLGNEVSDELLAKAFRKYPSFQKAKVVREKSKGYGFVSFRDSEDYVRAMREMDGKYV-GNRPIKLRKSAWK. 282
30 -31.300[A] KOG4207 Predicted splicing factor, SR protein superfamily  ali follow..  8  2..............................................SCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLERGFAFVRFHDRSDAQDAEAAMDGAVL--DERELRVRMARYGRRDLPRSSQ....................................................................................................................................................................................................................................................................................................................................................................................................................... 102
31 -31.000[R] KOG1457 RNA binding protein (contains RRM repeats)  ali follow..  12  16......................................................................................................................................................................................................................................................................................................................................................................................................TGSGAGSGGALEEEPQNLGFGRGQSCELEAGIHRGIIQWDHPPPPCHRHHHHHTYPNLLQDTV-----SVLFVHELKTRPGVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTARQPVGFVIFDSRAGAEAAKNALNGIRFENPQTLRLEFAKAN. 171
32 -30.800[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)  ali follow..  11  1.............................MFASVELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDCGFCFVEYYVRSEAEAAMRFVNGTRL--DDRLIRVDWDAGFVEGRQYGRGK-------------------------------------------TGGQVRDEYRTDYDAGRGGYGKLLSQKIAPNTDN......................................................................................................................................................................................................................................................................................................................................... 153
33 -30.200[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)  ali follow..  13  24.........VRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQVDWCFVKGPKRVKKSE....................................................................................................................................................................................................................................................................................................................................................................................................................... 161
34 -30.100[A] KOG4209 Splicing factor RNPS1, SR protein superfamily  ali follow..  10  24....LSAIEGDLNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLTPEEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDKGFAYVEFTEKEGMQNALA-MTDSLL--RGRQIKVDPKRTNKPGMSTTNRPPFRGRGGRGRGNVIVKY------------------------VYAGGFRPRGRGARRRPGFAPY....................................................................................................................................................................................................................................................................................................................................................... 205
35 -29.700[R] COG0724 RNA-binding proteins (RRM domain)  ali follow..  14  168...................................SRRAGARDPSSDAYRDSRERDDMCTLKIMQVNENADENSLRELLFPFAPIPRVSVVRNRGLAFVTFSSEEVAEQALRFLDGRGY--MNLILRVEWSKPKV............................................................................................................................................................................................................................................................................................................................................................................................................................... 272
36 -29.200[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)  ali follow..  11  4............................................................VYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPGYAFLDFEDSRDARDAIREVDGKNG--WRVEQSHNRGGGGGRGGGRGGGDGGR................................................................................................................................................................................................................................................................................................................................................................................................................... 89
37 -29.200[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)  ali follow..  11  2.............................................NKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGETRGTAFVVYEDIFDAKNACDHLSGFNV--CNRYLVVLYYQSNKAFKRVDMDKKQE................................................................................................................................................................................................................................................................................................................................................................................................................... 104
38 -28.300[R] KOG4454 RNA binding protein (RRM superfamily)  ali follow..  13  1..............................................MEIKPTPSPPEERTIYVANFSEEVDEELLEELFIQAGPVVKVILRDVAKFALVEFEDELSVLFAIELMNGVRLF--NQELQVKPRNGTNQEELYKRK....................................................................................................................................................................................................................................................................................................................................................................................................................... 99
39 -27.400[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)  ali follow..  10  70........EQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSEN--------SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATARVMTNKKMVTPYAN................................................................................................................................................................................................................................................................................................................................................................................................................... 202
40 -27.200[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15  ali follow..  17  2.....................................................SMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVSGKGYGFCEFFDSETTAMAVRKLNNSEL--GPRKIRVEFPSNDPRRNQSYEYTE..................................................................................................................................................................................................................................................................................................................................................................................................................... 97
41 -27.000[R] KOG2135 Proteins containing the RNA recognition motif  ali follow..  11  339...............................APRGRGNIRGRGGFARGGFTGAINRDNCTLQVAKIPPENTIAKLNEHFATFGTVDNIQV-GEIDSALVTYASKFDAGKA---YKSPTPVLNNRFIKVFWHNPGGEGSENATGKPSSPTSPPKPVEKPKIATVQESKFVSVAAQNYRKQIQDAKE-----------------------------------------RLTKEKSILSTLVQAQNQHNIILDKWMVKQKELLIKARTSTDETDKKNATKLVKHLHKKIKACKEEVDGILLKISEKSMVVDEIAAQIEELKNPQKSDDS-----------TRKRKAGSDGDEPQSKMSSVVIVRGVTDE--LVTDLMAHMEKFGEVFDHSVKADGLITAVFPFRKTGDALKAMA--DGKVLNGVDLEMELKTERIEEIPSTDTNMSADQLLAAIPSNLESDEEDD........................................................................................ 715
42 -26.500[R] KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains  ali follow..  13  197...............................RNSRRDDRRSNLSNNDRYSDWNPGVPSNKLAILNMPNDVDNTKITLSLGKCGYLVRTMTKFDRTFAFVEFSNRETAEQWMTDYEGWLTLDDGRTLAVEYAKGDPAAGSGNKGDD-SMNNFVKRQTCFKCEISKDQSMELEKLGAHMVGMTPCDTLLIRGLPDGINNSLIFDSLGALVCLSSISMIKLSSKRFAYLQMKSADEAKMLLNLTYKSPIRIKDKDVQVSWCRDS................................................................................................................................................................................................................................................................................................. 441
43 -26.400[AR] KOG0109 RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains  ali follow..  11  261........RDKEDQWTVSVQRQLVYRPSTEAGHNN---------KELPPPLPPRGACPDDEAVHQKPAPGHRAGDPLSFQAVGKVLECDII--KNYGFVHIEDKTAAEDTIHNLHHYKL--HGVNINVEASKNKSKASTK---------------------------------------------LHVGNISPTCTNQELQAKFEKYGPVIECDIVKD----YVLIHFIHMECCPQARLRTAPGMGDQCGCYQCKKEGHWSKECPVDRTGRVADFTEQCNEQYAAVHTPYTMGYGESRYYNDAYAALHYYKRYWLLWLPLRPPLPPIVEPRHAAAMLPTVGEGYGYGPESELFQASA-------------------------------ATRNSLHDMARYEREHYMDRACFSMAQATVIEPAVGGATGQVRVLHCTTHAEEN---------------------------------HLSWWNLEKGWRDLSELDSSVEEMLQLMICLRNGAASVFKEWSTQGEENK-VTQADHLEIEQG--VKI--SKE.. 693
44 -24.100[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)  ali follow..  11  178..........PYRHDKPNEPDDPLCEQNIKDRYYGRNDPVAEKIMKRAASLPTLEPPITTLYVGNLPEEITEPELRDQFYQFGEIRSIALVPRQQCAFVQYTKRNAAELAAERTFNKLV-IQGRKVSIKWAHSQAKQGTAAKTDRR.................................................................................................................................................................................................................................................................................................................................................................................................................... 316
45 -24.000[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)  ali follow..  16  1MNPLTKVKLINELNEREVQLGV-----------------------ADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKGFCFLCYEDQRSTILAVDNFNGIKI--KGRTIRVDHVSNYRAPKDSEEI....................................................................................................................................................................................................................................................................................................................................................................................................................... 124
46 -23.300[R] KOG4208 Nucleolar RNA-binding protein NIFK  ali follow..  16  2.....................................................AAFSRSAGPILSLNP-QEDAELQKEVAQCDTVTRFRLSRKKGYAFVEFESEDVAKIVTETMNSYLF--GERLLECHFMPPEKKM............................................................................................................................................................................................................................................................................................................................................................................................................................. 88
47 -22.600[A] KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1  ali follow..  13  1MT--TTVSTGATAVATLRETSPPVDGHEE------------ARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRARGFGFITFVDPSSVDKVLNN---REHELDGKKIDPKVAFPKRTQAKLVTKTKK---------------------------------------VFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDRHRGFGFVTFDSDEVADKVCEI-HFHEINGKMVECKKAQPKEVMLPVQLNKSRA...................................................................................................................................................................................................................................................................................... 225
48 -22.300[TR] KOG4019 Calcineurin-mediated signaling pathway inhibitor DSCR1  ali follow..  10  2.................................................EEVDLQDLPSATIACHLDPRVFVDGFESLFRTYDKDITFQYFKSFKRVRINFSNPFSAADARLQLHKTEF--LGKEMKLYFAQTLHIGSSHLA........................................................................................................................................................................................................................................................................................................................................................................................................................ 97
49 -22.100[A] KOG0533 RRM motif-containing protein  ali follow..  10  11LEDIISKTRKTTGSIQKKSFGGARRGNTRPTGLPRRSGKDLDAVQNHGISSRGNDSKVIRVNISNLAPTVISSDLEELFGDYR-LSSVSVNDSLGTGDISLTK-RDAERLVQKFSGVAL--DGKIMKFAVIDSSNMAGRVDFGNRSRSSPGRSSRGFQSGPRRNNGKPEDFLRDGVHAGDIKR-----RDAKPKKTEAELDAELEAY....................................................................................................................................................................................................................................................................................................................................................... 234
50 -21.800[D] KOG2186 Cell growth-regulating nucleolar protein  ali follow..  10  384..................................YKTAEKGSRLISAILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVRGKGYGFVMFKTRKGAREALKRPEKR---MYNRIVVCNLASEKPGKAGKEQDMAEPVNIDLTKMANQSEAVLPGIELGRGHVLEKMHHQQQ----------------------------------------QTMDMFGQNMPFYGYSHQFPGFD----------MYGALSGNQMLAGLPNYDLNFDNRKTKKMVWFQCEDCGESLKKPKLSCIDCGEMFGRDTVQGHNQCITEAEKYGPKGQSKSANGTPAKPKDISKQEPDFDINVGLSNRYPWFCSKATSQQTLLAHADGKKHRFHARQQQEQSTTLDNKDGSENASNVDSEQKKVDLPASSGVANGESHPEKKRKLETLDETSEGEEAKGSDLKKAKKQDHEKKINWKKLI--TSALKSNEDKTLK---------------MKKLKKLVLESIVDSGRDKSELKAELELKVNLSSRFTVDGKYVKL 845
51 -21.200[K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)  ali follow..  6  1.........MQSEESHELTDGISEEKESKETMKSQKADRKKKKLKEKLLKEASKADNRGVCYLSRIPPHMDHVRLRHILAQYGELGRIYLAPEASEGWVEFAKKSVAKRVADMLNGEQI............................................................................................................................................................................................................................................................................................................................................................................................................................................... 137
52 -18.800[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)  ali follow..  9  2....................................AYQPVPGSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIRSKGYGFVTFRDPEAARRACAD------IIDGRRANCNLASLGRPRPPLPYAV...................................................................................................................................................................................................................................................................................................................................................................................................................... 112
53 -18.200[A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)  ali follow..  9  44MADFEDPKDTPLPKTVETRQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDKGYAFIEYEHERDMHAAYKHADGKKI--DSKRVLVDVERARTVKGWLPRRLGGG................................................................................................................................................................................................................................................................................................................................................................................................................... 194
54 -18.100[J] KOG0129 Predicted RNA-binding protein (RRM superfamily)  ali follow..  13  428...............................GDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAKGYAFLLFQDESSVQALI---DACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGS----------------------QPLDPRKTIFVGGVPRPLRAVELAMIMDRYGGVCYAGIDTDPPKGAGRVAFSNQQSYIAAISA---VQLQHGEIDKRVEVKP................................................................................................................................................................................................................................................................................................... 642
55 -18.100[A] KOG1996 mRNA splicing factor  ali follow..  16  247..GFREGQGLGKEQGLSTALSVEKTSKRGGKATEKGEAQDASKKSDSNPLTEILKCPTKVVLLRNMAGEVDEDETKEECEKYGKVGKCVIFEEAVRIFLEFERVESAIKAVVDLNGR--YFGGRVVKACFYNLDKFRVLDLAEQ...................................................................................................................................................................................................................................................................................................................................................................................................................... 404
56 -17.400[K] KOG2068 MOT2 transcription factor  ali follow..  16  82...............................DRKKIQKSKPKSSDGRKPLTSVRVVQRNLVYIVGLPLNLADEDLLEYFGQYGKVLKVSMSRTATGVYITYGKEEEAIRCIQSVHGFIL--DGKALKACFGTTK................................................................................................................................................................................................................................................................................................................................................................................................................................ 196
57 -17.100[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins  ali follow..  14  43.........................................................SPTLLLSNMHFEDFFEDLFEELGKFGEIESLNICDNLGNVYVQFKEEDQAAAALQALQGR--FYSGRPIIADFSPVTD............................................................................................................................................................................................................................................................................................................................................................................................................................... 148
58 -17.100[T] KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains  ali follow..  14  227........QNGATFNAKASPAKPKSKPVTKPSAARESKAPAPVSEHSSAATIDQQAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIQKGNCFGFVTFASAEAVKLVLQAHKESAIRIGNRRVSIEEKRGNN............................................................................................................................................................................................................................................................................................................................................................................................................................... 359
59 -16.600[R] KOG0151 Predicted splicing regulator, contains RRM, SWAP and RPR domains  ali follow..  10  110IDHFVEELKEQEIRERRNQDRENSRDHNSDNTSSSDELPDYFDPSGRLGSLDDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMRERHCGFVAFMNRADGEAAKEKMQGIIV--YEYELKIGWGKVVFLPSQALPAPPPGHMAIRSKEGCNLIFSVTSGPPMNSVPNQNSELVLTPNVPDI-TVISPEDEHLKQIIDTMALNVLD--------GGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWR------LYSFAQGDTLQRWRTEPYIMIAGSGRWIPPPLPATRSPEHGKESRGTYAAGKSRCTEAEQT-------------------------------------LTDSQRDEFEDMLRALTLERSQIREAMGF----------LDNAEAAGEVVEVLESLTLKETSIPTKVAR------------------------------------------SDIIH--NSSARVKEATLPDIMESFNDLYRITAEALRVIPESKYS----ERVLKVLQVWADWFLFSDNGLRATFLRSR. 599
60 -16.200[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)  ali follow..  14  356........KFDFDACNEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNRCYGFVTMSTAEEATKCINHLHKTEL--HGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSTNLKRDDKCDRKDDAKKGDDGSG................................................................................................................................................................................................................................................................................................................................................................................ 533
61 -16.100[A] KOG4213 RNA-binding protein La  ali follow..  15  44.EGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTKGSIFVVFDSIESAKKFVETPGQK----KETDLLILFKDDYFAKKNEERKQNKVEAKLRAKQEQEAKQKLEEDA-----EMKSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF--VRGAKEGIILFKEKAKEALGKAK...................................................................................................................................................................................................................................................................................................................... 287
62 -15.700[R] KOG1995 Conserved Zn-finger protein  ali follow..  17  246........................DGGSAPRRQEASYEDAATEKVKQCDADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGNIKIYTDKGDACLAYEDPSAAHSAGGFFNNYEM--RGNKISVTMAEKSAPRAPTFDQSF..................................................................................................................................................................................................................................................................................................................................................................................................................... 383
63 -15.600[A] KOG4676 Splicing factor, arginine/serine-rich  ali follow..  10  24.................................................GGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDVCFVKFHDPDSAVVAQ-HLTNTVF--VDRALIVVPYAEGVIPDEAKALS...................................................................................................................................................................................................................................................................................................................................................................................................................... 123
64 -15.400[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  9  40.....TESAASGGGGGGTPSADGAAGPGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGDLQEVKFFQSKGFSVISLGSESSLRAVLDQLPKKEM--HGQAPVVTYPSKQALTQFESLQKTRPVPPPQQNGPPRGPAPPSMGG............................................................................................................................................................................................................................................................................................................................................................................................... 207
65 -13.700[A] KOG4008 rRNA processing protein RRP7  ali follow..  9  39...................................................KKDPSKENSIIVSNIPAFVGEGVVLAIIDQFASFEVEESFVQRSTMSITFDKPEAVIQTLALCQDVGITDFLEDPEFPSVLKDSTTLYRKLFPSEEQIQEMADTYVERYDTEQTEARKEAKRKYSEPDEDGWITVTKAKKAAKSVKLK-----KEDVPLIGGLNNKKKKVDLAYYTFQIKKNRQEKAQELLKK.................................................................................................................................................................................................................................................................................................................. 241
66 -12.000[S] KOG4176 Uncharacterized conserved protein  ali follow..  13  1..................MHVEETQQKVNKAKKADKKQRRCLAIIKSDCEVSPSAEPTPYLAVLNLSNGLTEECLLTAAATGGKVIQVVMLPGKSYCFFICASLEDSQLIYEGMHNIST............................................................................................................................................................................................................................................................................................................................................................................................................................................... 104
67 -11.200[J] KOG2314 Translation initiation factor 3, subunit b (eIF-3b)  ali follow..  10  1MAAVVDIDVLTAQLGIN---SDVNLDSIQLPPGNDFGIESDDESVYQDDQSEFDTGFGNIIVVDHLP-EKLEGVVKKIYNQLGVIKENGLLMTLGYCFIEFNTPQEAQNAKEKSHGYKL---DKSHIFAVNMFDDFDRLMNVKEEWEPPQERPYVPGPFEVLGLDTYMVFVFQENLQKRFGHDTEVYWNDARQKKPEPVHKRQWSPIGTYLMVKLVDFSPGEKYLVTYHSQEPSNPRDASKVEIKVF--------DVRTGRMMRDFKGSADEFSIGGPGGVAGASWPVFRWAGGKDDKYFAKLSKNTISVYETETFSLIDKKSMKVDNVVDICWSPTDSILSLFVPEQGGGNQPAKVALVQIPSKVELRQKNLF-------SVSDCKMYWQSSGEYLAVKVDRYTKT------KKSTYSGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDQ------PRPDVSFYSMKTAQNTGRVSKLATLKAKQANALFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATAEH-DIEWDPT.. 580
68 -11.100[R] KOG2295 C2H2 Zn-finger protein  ali follow..  7  161.............................................................FLDTQDENISDSEVMRKYTEY-QQLNEFFVAHKDEEWFKYHPEDSVKRSEEQRGFLQRRTDVFMELLENGTIGSVKVDSSQADALIRVLDTCVIKLEGGTDEDLKVLDEKPKDPVVYERKA----------------------------------------------EQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDED------------------EGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNLAPSITRSEIEAVCNRFSGYLRVAIADPLVERRGWITFMRDVNIKEICWGLNNQRL-RDCEMGAIVNRD.. 593
69 -9.650[R] KOG1855 Predicted RNA-binding protein  ali follow..  20  313.EGFVSLKLVSSFKRVRQLTREWKVVGDAVRRKSR-NDVGTKVRRIEPLPSFDETMPSRTIVACDLPLDLTIEKVSDLFSPCGEIALIRILQQKECALVEYLESSSARDARHLNG................................................................................................................................................................................................................................................................................................................................................................................................................................................... 450
70 -9.380[AR] KOG2193 IGF-II mRNA-binding protein IMP, contains RRM and KH domains  ali follow..  11  4............................................................LYIGNLNESVTPADLEKVFAEHKISYSGQFLVKSGYAFVDCPDEHWAMKAIETFSGKV--LQGKRLEIEHSVPKKQRSRKPDEQIAQGPENGRRGGFGSRGQPRQGSPVAAGAPAKQQQVDIPLRLLVPT-------ATIRNITKQTQSKIDVHRKENAGAAEKAISVSTPEGCSSACKMILGRLIGKEGRNLKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKVREAYENDVAAMSLQSHLTPGLNLAAVGLFPASSSAVPPPPSSVTGAAPYSSFMQAPEQEMVQVFIPA----------QAVGAII------GKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIIT--------PPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAVIGK-------KTVNELQNLTAAEVVVP--TPDENDQVIVKIGHFYASQMAQRKIRD.................. 555
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;