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Query: [P] KOG1281 Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKFFSYILVYRRFLFVVFTVLVLLPLPIVLHTKEAECAYTLFVVATFWLTEALPLSVTALLPSLMLPMFGIMPSKKVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALKMVMMVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIAEAVVQQIINAEAEVEATQMTYFNGSTNHGLEIDESVNGHEINERKEKTKPVPGYNNDTGKISSKVELEKNSGMRTKYRTKKGHVTRKLTCLCIAYSSTIGGLTTITGTSTNLIFAEYFNTRYPDCRCLNFGSWFTFSFPAALIILLLSWIWLQWLFLGFNFKEMFKCGKTKTVQQKACAEVIKQEYQKLGPIRYQEIVTLVLFIIMALLWFSRDPGFVPGWSALFSEYPGFATDSTVALLIGLLFFLIPAKTLTKTTPTGEIVAFDYSPLITWKEFQSFMPWDIAILVGGGFALADGCEESGLSKWIGNKLSPLGSLPAWLIILISSLMVTSLTEVASNPATITLFLPILSPLAEAIHVNPLYILIPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNIVGVAVVMLGICTWIVPMFDLYTYPSWAPAMSNETMPLast
1 -189.000[P] KOG1281 Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters  ali  100  1MKFFSYILVYRRFLFVVFTVLVLLPLPIVLHTKEAECAYTLFVVATFWLTEALPLSVTALLPSLMLPMFGIMPSKKVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALKMVMMVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIAEAVVQQIINAEAEVEATQMTYFNGSTNHGLEIDESVNGHEINERKEKTKPVPGYNNDTGKISSKVELEKNSGMRTKYRTKKGHVTRKLTCLCIAYSSTIGGLTTITGTSTNLIFAEYFNTRYPDCRCLNFGSWFTFSFPAALIILLLSWIWLQWLFLGFNFKEMFKCGKTKTVQQKACAEVIKQEYQKLGPIRYQEIVTLVLFIIMALLWFSRDPGFVPGWSALFSEYPGFATDSTVALLIGLLFFLIPAKTLTKTTPTGEIVAFDYSPLITWKEFQSFMPWDIAILVGGGFALADGCEESGLSKWIGNKLSPLGSLPAWLIILISSLMVTSLTEVASNPATITLFLPILSPLAEAIHVNPLYILIPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNIVGVAVVMLGICTWIVPMFDLYTYPSWAPAMSNETMP 595
2 -92.700[P] COG0471 Di- and tricarboxylate transporters  ali follow..  15  15..............LVVMGVMLLIPVPDGMPPQAWHYFAVFVAMIVGMILEPIPATAISFIAVTICFKASKQALKWGLAGFSSTTVWLVFGAFIFALGYEVTGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFK----------------------------------------------------------------SFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVLGLEFVSKIAGVQ--ISWLQWFLSFLPVGIILLIVAPWLSYVLY------------KPEVTHSAEVAAWAGGELKNMGRLSRKEWTLIGLVLLSLGLWVFGGK---------------IINATAVGLLAVSLMLALHV-------------------VPWKDITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFANTMSTHLE-PDATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLLLVLSIGIMGCLTPYATGPGVIIYGCGYVKSRDYWRLGAIFGVIYIAMLLLVGWPI....................... 482
3 -36.200[P] COG1055 Na+/H+ antiporter NhaD and related arsenite permeases  ali follow..  14  9....................................FIFLLTLVLVIWQPKNLSIGWSACGGAVLALIAGVVNFHDVLTVTG-NATLAFVAIILISLILDNIGFFEWAALHMAKAAKGYGVRMFVYVSLLGAIVAALFANDGAALILTPIVLAMVRALHFNEKLV------------------------------------------------------------------------FPFIIASGFIADTTSLPFVVSNLVNIVSADYFH--------ITFIDYASRMVVPYLFSLLASIIVLYLFFRKSIPKRYDLTEVKKPVEAIKDQNMFRLSWYIL-------GLLLIGYFASEFF---------------------SIPVSVVAGSIAIIFLIA------------------KSPAVHTKKVVKEAPWAIVFFSIGMYVVVYGVRNAGLTDVLSDVIQAAADQGLFAGTIGMGFIAAILSSIMNNLPTVMIDALAIAGTDTH-GMMREALIYANVIGSDLG-ITPIGSLATLLWLHVLSISWGTYFKTGIILTIPTLLITLVGLYIWLLIIHSC................ 434
4 -35.600[P] COG3067 Na+/H+ antiporter  ali follow..  12  24...............ALLVFLIVNPFIFLANPFIAGWLLVAEFIFTLAMALKCYPLLPGGLLAIEAVIIGMTSAAHVREEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTRLLLAVVISVAVGFYGIYHRVASSRGEENDMLDDSHIDPHYKTVLEQFRGF----------------------------------------------------------------------------RSLMMHAGVGTALGGVMTMVGEPQNLII--------AKAAGWHFGDFFLRMSPVTVPVLVCGLLTCMLVE-------KMRWFGYGETLPEKVRDVLQQFDDQSRKKRTRQDKIKLIVQAIIGVWLVTALA---------------LHLAEVGLIGLSVIILATALTG-----------------VTDEHAIGKAFTESLPFTALLTVFFSIVAVIIDQHLFAPIIQFVLQASEHAQLTLFYLFNGLLSSISDNVFVGTIYINEAKAAMENGAISLK-LAVAINTGTNLP-ATPNGQAAFLFLLTSALLSYGRMVWMALPYTIVLTLIGLLCVEFTLAPATEWMTQAGWLATLS..... 514
5 -12.900[GE] COG2610 H+/gluconate symporter and related permeases  ali follow..  12  10....................................VILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAGVLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFG--KKHIQWAVVLTGFTVGFALFYEVGFVLMLPLVFTIAASANIPL-----------------------------------------------------------------------------LYVGVPMAAALSVTHGFLPPHPGPTAIA-------TIFNADMGKTLLYGTILAIPTVILAGPVYARV--------------LKGIDKPIPEGLYSAKTFSEEEMPSFGVSVWTSLVPVVLMAMRAIAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMF-----------GLNRGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLVDSGVDKYIASMMHETN-----ISPLLMAWSIAAVLRIALGSATVAAITAIAAPLIATTGVSPELMVI--AVGSGSVIFSHVNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLVGCLLLNMVI................... 438
6 -11.600[Q] COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component  ali follow..  10  13.............MFVSLIVFLLLGYPVAFSLAANGLLFFIIGVELAPLSDSINLSWPLLNALPERFWGVMSNDTLLAIPF-----FTFMGIV-----LERSGMAEDLLDTIGQLFGPVRGGLYAVIFVGALLAATTGVVAASVIAMGLISLPIMLRYGYDRR------------------------------------------------------------------------------IASGVIAASGTLAQII--PPSLVLI-----VLADQLGRSVGDMYAGALPGLVLTGLYMGYILLMTFVKRHSMPALPLEARTLGSGVASLAIALLVACAIAYASPTQGENADILGATVGIIFIYLAALADRTLKINALSRLAQQVIIVLIPPLALIFLVLGTIFLGIATPTEGGAMGAVGALVMAAGKGRLNMEVLFILIGARVFSLTFYGVNGHLWVEHLLTALPG-GEIGFLIAVNVLVFFLAFFLDFFELAFIIVPLLAPAADKLGIDLIWFGVLLGINMQTSFMHP---PFGFALFMMQPVTTGQIYWGAVPFVCIQVVMVALTLMFPQMVLHYKGSGAAVDPSTIKIEVP 535
7 -10.500[S] COG1288 Predicted membrane protein  ali follow..  10  15.............YTVLFIIIAIMAVLFIPAGAYETAKGGGVISGTYKTVASNPQ---GFFDILMAPVRGMLGVEGTDGAIQVSFFILMVGGFL---VVNKTGALDTGIASVVRKNKGREKMLIAILIPLFALGGTTYGMGEETMAFYPLLIPVMIAV----------------------------------------------------------------------------GFDSIVAVAIILIGSQIGCLASTINPFATGVAADAAGV------------IADGMIWRVIQWVILVGMSIWFVYNYASKIEEDPSKSLVADKEEEHKELFQLQNSGEDLNKRQRNVLTIFTLTFVIMILSLIPWEDFGIKFFTNINTWLTTTMLFIMMGVLVAIV--------------YRMSEEDFFSSFLTGAGEFLGVAMICAIARGIQVIMNGGMITATILHLGETLSGLSSQVFVILAYIFYLPMS-IPSTSGLAGATMGIMAPLGQFSNVPAHLVITAFQSASGILNMI---SPTSAIVLALGRVDLGTWWKFIGKFIVMVMLVSVLLL.......................... 491
8 -10.200[C] COG2851 H+/citrate symporter  ali follow..  13  8.....................................VMMIVFMYLIMSNRLSALIALIVVPIVFALISGLGEMMIQGVTDLAPTGIMLLFAILYFGIMIDSGLFDPLIAKILSFVKGDPFKIAVGTAVLTMTISLDGDGTTTYMITIRAMLPLYKRLGMNRLVLAGI------------------------------------------------------------------MLGSGVMNIIPWGEPTARVLASLKLDTSEVFTPL--------------------IPAMIAGILWVIAVAYILGKKERKRLGVISIDHAPSSDPEAAPLKRPALQWFN--------LLLTVALMAALITSLLPLPV--------------------LFMTAFAVALMVNYPNVKEQQKRISAHAGNALNV-----------VSMVFAAGIFTG--LSGTKMVDAMAHSTRSL--IPDAMLPLITAIVSMPFTFFMSNDAFYFGVLPIIAEAASAYGIDAAEIGRASLLGQPVHLLSPL-VPSTYLLVGMAGVSFGDHQKFTIKWAVGTTIVMTIAALLIGIISF.................. 426
9 -8.490[R] COG2056 Predicted permease  ali follow..  8  10.......................................VVMIVLSLLRVNVILAIILAAITAGLVASLSITDTMQLLLSGMGGLSYILLGGFAVM--IGYSGITSFLVKRLISVLKGRRAFMLLAIAGASLSQNVIPVHIAFIPILIPPLLLLFDKMKVDRRG-----------------------------------------------------------------------------VAASLTFGLKAPYILIPAGYGLLFHSIIADEMTANGMSISIEQIPLAMLFPGLAMVVGLLVAIFITYGKDREPRNDAQVDEQSTINETAATEEREFFSLKHVLTLLAIVAALTVQILFQ------------------------SLVLGALTGIILMFA-------------------FRVVPFHRGDEVMNEGIAFVMLIASGYATVLKETGAVEQLVASTSSSLGSHSFLIALVLIFIGLVITMGISSFGTIPIIAALYVPLCAAVGFSPLATAALIGTAGVLG-GSPASDSTLGPTSGLNADGKHHHIWDTCVPTFLHYNIPLIVFGLIAAMVL.................. 439
10 -8.160[R] COG2704 Anaerobic C4-dicarboxylate transporter  ali follow..  14  37....................................................................................................................................................................................................................................................................................................................................................................................................................................VFVFHLQPGKPPVDVMLVIIAVVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTILCGTGHVVYTILPIIYDVAIKNNIRPERPMAASSIGAQMGII-PVSVAVVSLVFDGKHLEFLDLLSITIPSTLLGILAIGIFSWFRGK---DLDKDEAF.......... 206
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.