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Query: [GOU] KOG1442 GDP-fucose transporter, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYKNLEEHNRLVNKYLKIFFVVSLYWCTSILTVFVNKHLLSSDTVNLGAPLFMSWFQCVVSTVICFVASRLSRKYPSVFTFPEGNPLDIDTFRKILPLSVLYTLMIGANNLSLSYVTVAFYYIGRSLTTVFSVVLTYVILRQRTSFKCLLCCGAIVVGFWLGVDQESLTEVFSWRGTIFGVLSSLALAMFSIQTKKSLGYVNQEVWLLSYYNNLYSTLLFLPLIIINGELESIITYPHLWASWFWAAMTLSGLCGFAIGFVTALEIKVTSALTHNISGTAKACAQTVIATQYYHDVRSALWWTSNVVVLVASAAYTRVKQLEMMRQHQQRSTATQKALast
1 -116.000[GOU] KOG1442 GDP-fucose transporter  ali  100  1MYKNLEEHNRLVNKYLKIFFVVSLYWCTSILTVFVNKHLLSSDTVNLGAPLFMSWFQCVVSTVICFVASRLSRKYPSVFTFPEGNPLDIDTFRKILPLSVLYTLMIGANNLSLSYVTVAFYYIGRSLTTVFSVVLTYVILRQRTSFKCLLCCGAIVVGFWLGVDQESLTEVFSWRGTIFGVLSSLALAMFSIQTKKSLGYVNQEVWLLSYYNNLYSTLLFLPLIIINGELESIITYPHLWASWFWAAMTLSGLCGFAIGFVTALEIKVTSALTHNISGTAKACAQTVIATQYYHDVRSALWWTSNVVVLVASAAYTRVKQLEMMRQHQQRSTATQKA 337
2 -97.100[GOU] COG5070 Nucleotide-sugar transporter  ali follow..  17  5.KTGHAGHNPWASVANSGPISILSYCGSSILMTVTNKFVVNL--KDFNMNFVMLFVQSLVCTITLIILRILG--------YAKFRSLNKTDAKNWFPISFLLVLMIYTSSKALQYLAVPIYTIFKNLTIILIAYGEVLFFGGSVTSMELSSFLLMVLSSVVATWGDQQAVAAKAAGYFWMFTNCITSALFVLIMRKRIKLTNFKDFDTMFYNNVLALPILLLFSFCVEDWSSVNLTNNF-SNDSLTAMIISGVASVGISYCSGWCVRVTSSTTYSMVGALNKLPIALSGLIFFDAPRNFLSILSIFIGFLSGIIYAVAKQKKQQAQPLRK....... 337
3 -90.100[GE] KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter  ali follow..  17  42.SDMSSSSSSPKKQTLFISSLIILWYTSNIGVLLLNKFLLSN--YGFKFPIFLTMCHMSACAILSYVSIVFLKLVP------LQYLKSRSQFLKVATLSIVFCASVVGGNISLRYLPVSFNQAVGATTPFFTALFAYIMTFKREAWVTYGALVPVVTGVVIASGGEPGFHWFGFIMCISATAARAFKSVLQGILLSS-EGERLNSMNLMLYMSPIAVIALLPVTIFMEPDVMSVTTLGRQHKYMYILLLVNSVMAYSANLLNFLVTKHTSALTLQVLGNAKGAVAVVISILLFRNPVTVMGIGGYSITVLGVVAYGETKRRFR.............. 355
4 -86.500[S] KOG1443 Predicted integral membrane protein  ali follow..  14  2.............NRTVFLAFVFGWYFCSIALSIYNRWMFDPKDLGIGYPVLVTTFHQATLWLLSGIYIKLRHKPVKNVLRKNNGFNWSFFLKFLLPTAVASAGDIGLSNVSFQYVPLTIYTIIKSSSIAFVLLFGCIFKLEKFHWKLALSVIIMFVGVALMVFNDQALVIFGSFLVLASSCLSGLRWVYTQLMLRNNPESKPHPIHTIHQLAPIMGITLLLTSLLVEKPFPGIFTTVLSIVRGIVLLILPGFAVFLLTICEFSILEQTPVLTVSIVGIVKELLTVIFGIIILSERLSGFNWLGMLIIMADVCYYNYFRYKQDLLQKYHSVSTQDNR 395
5 -81.200[GOU] KOG1444 Nucleotide-sugar transporter VRG4/SQV-7  ali follow..  18  1........................................................................................................MIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGKVTSMELTSFIMMVLSSVVATWGDQQAIAIKASGYLWMFTNCISSALFVLIMRKRIRLTNFKDYDTMFYNNVLALPLLLVFSFIMEDWSTKNLSVNL-SADSLAAMVISGLMSVGISYCSGWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPKNFLSFFSIFLGFLSGLLYAVAKQKKIQQQKVLAATLEK.. 249
6 -59.800[G] KOG1583 UDP-N-acetylglucosamine transporter  ali follow..  11  1...........MALNLKALLGMLFVFIGCCSNVVFLELIIQI---DPGAGNLITFAQFLFIALEGLVFTSK-----------FTVRPKIALKDYVILVALFFGANVCNNYAFNFNIPMPLHMIFRSGSLMANMIMGIVLLKKRYNLRQYSSVAMITAGIILCTLVSSGDVFWWTVGIGLLTIALLVTAYMGIYQEVIYKKYGKHPSEALFFTHMLPLPGFLIMAGNIVQHFGIAWSSEPVAPLMLFYLLCNVVTQYVCISAVYVLTTECASLTVTLVVTLRKFVSLLFSIIYFRNPFTLNHWVGTILVFFGTILFANVINQVRDAYRARSSRKTHFD 343
7 -58.200[G] KOG1581 UDP-galactose transporter related protein  ali follow..  14  3.EPELVNGGVKENKLWKGVFAVSGIMSTLVIYGVLQEKIMRVPKEFFKHSLFLVFCNRLTTSAVSAGALLA----------SKKVLDPVAPVYKYCLISVTNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMVWGTLIMQKKYKGFDYLVAFLVTLGCSVFILFPAGDDVSPVWGVSLMAGYLGFDGFTSTFQDKLFKGYNMEIHNQIFYTTLCSCVLSFTGLILQGHLLPAVDF--SLHRDCLLDIALLSTVATASQFFISYTIRTFGALTFAAIMTTRQLASIMLSCIWFSHPLSWEQCIGSVIVFGSLYAKNLLNNKKNSQTQPPPPELPQYE 339
8 -39.800[S] KOG2766 Predicted membrane protein  ali follow..  13  32.......GKLFTWNILKTIALGQTLSLCICGTAITSQYLAER--YKVNTPMLQSFINYCLLFLIYTVMLAFRSGSD------NLLVILKRKWWKYILLGLADVEANYVIVRAYQYTTLTSVQLLDCFGIPVLMALSWFILHARYRVIHFIAVAVCLLGVGTMVGADILAGREDLIGDILVLLGASLYAISNVCEEYIVK--KLSRQEFLGMVGLFGTIISGIQLLIVEYKDI---ASIHWDWKIALLFVAFALCMFCLYSFMPLVIKVTSATSVNLGILTADLYSLFVGLFLFGYKFSGLYILSFTVIMVGFILYCSTPTRTAEPAESSVPPVTSIG 354
9 -39.600[R] KOG3912 Predicted integral membrane protein  ali follow..  9  4.................RVFLSLIFVLSGTFNVLVVKWASDGKLHGFQHPVVFTLLMFLGEFLCFAVFKVIRLISNRRGV-ILSQDSSEFRPVSMLLPTLLDAAASILLFTGLYLTYATSFQMIRGAALIFVGIFSTMFLNHTLTGRHWLAIFTISCGLLDIISLDVHRVEYDLTGDLLIIIAEILHGLQYVCEEKQLKTSNVAPLQAAGWQGIFGLGITSMLAICMNFLPSIDPAALQGSISLIMTLIAFTISCAMYNFIGLYIAMYSSSANRLLADGLRVYFIWVFVIIMEWEYMNLVTIMGFLILQMGIILYR..................... 342
10 -34.200[R] COG5006 Predicted permease, DMT superfamily  ali follow..  8  2..PGSTRKLPVWLPILVLLIAMSSIQSGAS----LAKSLFPLVG-----APGVTALRLALGTLILIAFFK-----------PWRLRFAKEQRLPLLFYGLSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDF------IWVVLAVLGLWFLLPLGQDMSHVDLTGAALALGAGACWAVYILTGQRAGA--EHGPATVAVGSLIAAIIFVPIGAVQAGDALW--------HWSILPLGLAVAVLSTALPYSLEMILTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTGIQILALCAIIAASMGSTLTIRREPQIKQVD........ 293
11 -33.700[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily  ali follow..  15  7..RGRHRLIRRVSGQVYLWLAIFIFAVTRKLTEIGARHFIDGRN-----PISLCNVLFVGNLCALMVMLLIYSRQWNKATLTQ---LSKKDWLGLTAVAILGALAPGLIFHALSLTGVNNVILVGRLEPTLALALSVWLLKEQINFGEFIGAIAAFIGVILTIILQPPVSDMM-LGEFFVAAGSVALAISTIIGKKYLT--HIPLGIYSIFRTALGTVIFFFIALVLYGREHFADV----SPFLWQWMFLYGGVIVVVGQSFWLILKTSTVSTASLVASFTPIAGIVAAYFILSEVPTVAQYLGGGLIMLGIFLSQISKSRQTSHKSPIASTPAEQK 341
12 -29.200[R] KOG4510 Permease of the drug/metabolite transporter (DMT) superfamily  ali follow..  9  3LQRISKDYLKPNYGLILLIVSYFFNSSMVVSTKVLENDPLETSQSRIN-PLQILLVRMSITYCCTLVYMHWNKQSVPDIPWGPAPCRKWLILR-----GIMGFFGVFGMYFSLMYLSISDAVLITFMSPTLTIFLSFLLLGEPFSKLEALGSLISFSGVVLIIRPTFLFGEQTLIAIGVSLLGVCGLSSVYIIIRYIGNKA--HAIMSVSYFSLVTTVVAALGVLLIPSMSLQL------SWKQWGLFLNLGISGFIHQILLTMGIQRERAGRGSLMTYTQVIYAVFWDVVLFHHWPNIWTWCGMAVIVSSTIWVINMRASKQNVVATAELLSTSDF 346
13 -27.600[S] KOG2765 Predicted membrane protein  ali follow..  12  3.....GRTQRLLLGISILVLVDVVWVSSS-----LTKFLYNEA--NFDKPFFCTYFKTSMFSIYLLVIALMARLSYAASLRIRRQKTHHKTAKTALLFCLLWFAANYFFQLALEMDEAAMITLVSSTSSFFIICLAAVFPSATGDKLTITKVIAVAMNIVVAITMNDLHDTKMTRGVLLALFSAFFYAAYLVFVKRKSD--TEEKVDIPLFFETFELP----------------------SQGQFALLFLNGLVGTVLSEALWWGCFLTSSLIGTLAMSLQIPLAILFDVLLKNKPYSPMFYMGSIPIFVALVFVSLLMRNDDSDPLMKLFRIVYRK 400
14 -24.600[R] COG2962 Predicted permeases  ali follow..  8  2......DAKQTRQGVLLALAAYFIWGIAPAYFKLIYYV-----------ADEILTHRVIWSFFFMVALLSVSRQWRQVKRLLK----TPKKIFLLALSAVLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIFLGERFRRMQWLAVILAVCGVLVQLWTFGSLP---IIALGLAFSFAFYGLVRKKIAVEAQTGMLVETL-WLLPVAAIYLFGIADSPTSH----------GQNALSLNLLLMAAGVVTTIPLLCFTGAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEVPGADKMVTFAFIWVALAIFVMDAIYTQRKK........... 294
15 -23.000[G] KOG2234 Predicted UDP-galactose transporter  ali follow..  11  26.AYDDHKIRVSSKQRVLNVLLVVGDCMLVGLQPVLVYMSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVSTFVQAARNNVLLAVPALLYAINNYLVPLYFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQALALLLIGISVNQLRSLPIPLATGAYVCTVIFVTVPSMASVFNEYALKSQYDTSIYLQNLGIVTVIYKGLQYALLRNFVMILTGPGSFDILQSRATMFLILNNAAQGILSSF----FFKYADTILKKYSSTVATIFTGIASAALFGHVITMNFLLGISIVFISMHQFFSPLAKARDEQQQNGNLELGNT 422
16 -22.000[S] COG2510 Predicted membrane protein  ali follow..  10  6...............................................................................................................................................................................WQFWALMSAVFAALTAIFAKVGIQ--GINSDFATLVRTFVIIGALCLFLTVTGQWQKPGEI----SARSWLFLVLSGLATGASWLAYFRALQIGDASRVAPIDKLSVVLVALFGAAFLGERMSTINWIGILLIGCGVVLVA..................... 140
17 -13.900[S] COG3238 Uncharacterized protein conserved in bacteria  ali follow..  10  1..........MNKNKYSTPLLMLATILAGMLSPMVNGQL----GHWLQDGNACAVISFASGLVVMFFIIIARKETRQQFASIPTLIKKRKIPLWNWFAGLCGAMVVFSEGASASALGVATFQTA---LLLSGLLCDRF--KKYFTPWRITGALFAVIATIFVVSPQWH-STSFILLAILPFLAGLLAGWQPAGNAKVAEATG-SMLVSITWNFIVGFCVLGAALAIRIALGHVTIQLPD--------MYLGGPLGLLSIGLMAILVRGLGLLMLGVASTAGQLLGSVLIDELIPNTVYLVTIIGTLFALVGAIVTTIPEYRASKMAQRIEVSE.... 323
18 -10.900[X] KOG4831 Unnamed protein  ali follow..  8  57.......................................................................................................................................................................................................................................................YLMPFLLNQCGSLLYYLTLASTDTLAVPICNSLAIIFTLIVGKALGEDIGGKRAVAGMVLTVIGISLCITSSVPWTAELQLHGKGQLQT. 146
19 -10.800[G] COG4975 Putative glucose uptake permease  ali follow..  8  69..................................................................................................GALWAFGQANQLKSISLIGVS-MPVSTGMQLVGTTLFSVIFLGEWSSMT-LIAMILLVTGVALTSLKAKNERQSDNPEFKKAMGILIVSTVGYVGFVVLGDIFGVGGTDALFFQSVGMAIGGFILSMNHKTSLKST--------------LLPGVIWGIGNLFMFYSQPKVGVATSFSLSQLLVIVSTLGGIFILGERKDRRQWAGIIIIVIAAIILGNLK.................. 287
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;