current user: public
If you have questions about the server, please let us know.

Query: [R] KOG1492 C3H1-type Zn-finger protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .
# Score Template Links and tools%idFirst MRPFKQSKFSLVWTQNDPQPRMPIAHMRNQNIVPQLVPWKRVTYWRRLMNSVSAFRNGSSLNISRKLSMMRKRHTIYTRSTNGYSLRKSKVLSVGGSHLKWSKSIERDSRKANEEATLAVAAYSKKESEKQSGQNNTSTASRNHLAHGRMTLFPANLKFFIIDFWFSGERVFRFGSLRYKMDSSRRTLQRISDVDSPCSGPSENGKGVKRPFIPKRLVIGNEEYVRFGNGNQLVRDPKKRTRVLANEKVRWSLHNARLRLAKKKKYCQFFTRFGKCNKDDGKCPYVHDPSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYYLQGLCNNEACPYRHVHVNPIAPICDGFLKGYCSEGDEHSYNCPVFEATGSCSQGLKCKLHHPKNQSKGRKRKRTNEPSQKNARRRYFSSLHNILSESEPMVFNRRSTDSEVFGMESLDFITLGTAEYEAGDDNDPATVQSISSDSESLISIYNLITPVALMHSRGFRFVTFKDEKSMKDVIEGLAGQELDGRSITVIMAQLRGSGRGSEDTAAVVAVTQEKVVVAMELVVVTQEEVVVAVEAKEDTAAVLAVTQEVVVVAAEAKEDTAAVLAVRRIWWWSRRKRRWRMVIPYWFCLIWVLCVVFGFTFATLDVTGRVIKFDIWKRNGKSLFLVLast
1 -154.000[R] KOG1492 C3H1-type Zn-finger protein  ali  100  1MRPFKQSKFSLVWTQNDPQPRMPIAHMRNQNIVPQLVPWKRVTYWRRLMNSVSAFRNGSSLNISRKLSMMRKRHTIYTRSTNGYSLRKSKVLSVGGSHLKWSKSIERDSRKANEEATLAVAAYSKKESEKQSGQNNTSTASRNHLAHGRMTLFPANLKFFIIDFWFSGERVFRFGSLRYKMDSSRRTLQRISDVDSPCSGPSENGKGVKRPFIPKRLVIGNEEYVRFGNGNQLVRDPKKRTRVLANEKVRWSLHNARLRLAKKKKYCQFFTRFGKCNKDDGKCPYVHDPSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYYLQGLCNNEACPYRHVHVNPIAPICDGFLKGYCSEGDEHSYNCPVFEATGSCSQGLKCKLHHPKNQSKGRKRKRTNEPSQKNARRRYFSSLHNILSESEPMVFNRRSTDSEVFGMESLDFITLGTAEYEAGDDNDPATVQSISSDSESLISIYNLITPVALMHSRGFRFVTFKDEKSMKDVIEGLAGQELDGRSITVIMAQLRGSGRGSEDTAAVVAVTQEKVVVAMELVVVTQEEVVVAVEAKEDTAAVLAVTQEVVVVAAEAKEDTAAVLAVRRIWWWSRRKRRWRMVIPYWFCLIWVLCVVFGFTFATLDVTGRVIKFDIWKRNGKSLFLV 658
2 -48.300[R] COG5084 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins  ali follow..  18  8.........ENIASLAGAINQYKNEKAEPTQVLD-----AAKANKNTRSYPYSVSRNYSFILNKSNRSKSTAASPPYVIPSTSSNADDANKEPEKQSTSDYVSRKNRHMQLIKKNILEHDLQARKANLESYRAKLEKEYKTLAE-------------NKIQQRLSDGTKQLVTIDGLQYITGVSDTKWLEFVSAKG--------------------------------------QCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYYNANGICGKGA-ACRFVHEPTRKTICPKFLNGRCNKADCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKGFCELGTSCKLQCTDYAMFGSCN-NPQCSLYHGAVSADVPEQTEAPISKTAGSINPEDSGSEIGSNSLESNLD....................................................................................................................................................................................................................................... 373
3 -24.100[K] KOG2494 C3H1-type Zn-finger protein  ali follow..  16  1.......................................................................................................................................................................................................................................................MTAVNVALIRDTKWLTLEVCREFQR-GTCSRADADCKFAHPPRRVVACFDSLKGRCTRENCKYLHPPPHDKLEVCREFQRGNCTENDCRYAHPTDASTVTICMDYIKGRCSR--------------------EKCKYFHPPAHLQARLKAAHHQMNHSAASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHCQQALTNLQLPQPAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPTTGNQ.......................................................................................................................................................... 351
4 -18.400[O] KOG1039 Predicted E3 ubiquitin ligase  ali follow..  11  2...........................................................................................................................................................................................................................................................................................................................STKQITCRYFMHGVCRGSQCLFSHLANSKPSTICK-------------------YYQKGYCAYGTRCRYDHTRPSAAAGGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKTQPSMVSNPGSCSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECRFGDACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSICMEVILEKA---SASERRFGILSNCN-----YCLSCIRQWRFVIPYWVCKYF--C--FGYRHAYPD--GRLAEPEKPRKQLSS.... 366
5 -16.800[S] KOG4791 Uncharacterized conserved protein  ali follow..  25  1...................................................................................................................................................................................................................................................................MPNQGEDCYFFF-YSTCTKGD-SCPFRHCEAALG------------------------NETVCTLWQEGRCFRRVCRFRHMEIDKKRSEIP------C-----------YWENQPTGCQKLNCVFHHNRGR............................................................................................................................................................................................................................................................................ 88
6 -14.200[R] COG5063 CCCH-type Zn-finger protein  ali follow..  10  3..............................................................................................AQLSYTRPESQKTDLTSLFSTDQEQNPLNDYQYQINIRELEEYYNKTILNEDNIQETSSEISSAVSFSPPKNTNAIQPGLLYDPQLMNPFLPSAHLNSTAPTTFKKKLEVQINPDYVPKSSQLPLTSQNLQQLSQQKPKNDASFSSEKESSAQPKVKSQVQETPKQLYKTELCESFTLKGSCPYGS-KCQFAHGLGELK-----------------KKSCKNFRTKPCV---------------------------------------------NWEKLGYCPYGRRCCFKHGDDNDIAVYVKAGTYCNVSSTSKQSDEKRSNGRGSAKKKNLNVKVK.................................................................................................................................................................................................................................. 278
7 -13.500[R] KOG1595 CCCH-type Zn-finger protein  ali follow..  9  221...............................................................................................................................................................................................................................................................................KVKPCSRA--ECPFVHPGEN-----------------------ARRRDPPCPEFRKGSCKGDSCEYAHGVFES----------------------HPAQYRTRLCKDETGCAFAHRRDELRPVNASTGSAMVSPRSSNQSPEMSVMSPLTLGSSPMNSPMANGVPLSPRNGGLWQNRVNSLTPPPLQLNGSRLKS----------------------------TLSARDMDMEMELRFRGLDNRRLGDLKPSNLEETFGSYDSASVMQLQSPSRHSQMNHYPSSPVRQPPPHGFESSAAMAAAVMNARSSAFAKRSLSFKPAPVASNVSDWGSPNGKLEWGM--P----VSWVNSLV-NTVNGAASRDKFKLP---W----EQMYI. 589
8 -10.600[A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain  ali follow..  10  13...............................................................................................................................................................................................................................................................................................................................................................................EELQRRGLDTRGLKTELAERLQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPHAE----PGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARARVCFEMKIN--VVRIWSL---YGYKFAENDVIGCFADFE-FTKNGKWM... 352
9 -10.400[R] KOG2333 Uncharacterized conserved protein  ali follow..  9  18............................................................................................................................................................................................................................................KQDGNKKRKRKERGQNKRREKIHVKENNALCPAISIGNECPYKE-NCKFPHDVEA---------------------------------YLA------------------------------TKAPDIGDKCPIFERYGVCPAGFKCRWGHVVINADGKYELIKKPDGQFTLFTVNTVGKEVQRKLRTKQLDLSKAESIISAVLGEEKPDPSSKVSNIPEENRDATSAISEGKETESVSLEETGVLKNQTVSVNVDLKEISSQARSNIALPT-MQGHQPEWALVRGLNYEREMMRGGRRGILGVQLATGKLWQATKTAQVIAEQCDGVDFLDLSSLLENPGRLLRNLQGMDAVSGQIPVTVKLRMGNHGRSRQQRWDYILS-----------LIG------DCIARGALVKPW------IF.. 493
10 -9.810[TZ] KOG1044 Actin-binding LIM Zn-finger protein Limatin involved in axon guidance  ali follow..  13  1............................................................................................................................................................................................................................................................................MYGT--RCH----GCKTYHPN-ACTICKRPFPPGCAQPMS--SSPKETTFSSNCA----------GCKQWHLG---KCKSCGKVLTGYCEKGVKCE-ACHQF--TGSCARCSRCNQMTLSPTPSAEGYQDVRDRMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHFHRPGNEPSSGRNSPLPYRPDSLPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQHRALAAQSKSSEDIIKFSKFPAAQAPDPSETPKIETDHWPGPPSRRSSGREEDDEELLRRRQLQEEQLMKLNSGLGQLILKEEMEKESRERSSLLASRYDSPINSASHIPSSKTASLPGHMPAMRMIFPY------MLMVIFGMSIQEFD------RLPLWRRN-KKLF.. 626
11 -9.150[K] KOG4218 Nuclear hormone receptor betaFTZ-F1  ali follow..  9  2....................................................................................................................................................................................................................................SSNSDTGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPV------C---GDKVSGYH----LLTC----ES--------------------CKGFFKRTVQN-NKRYT------------------CIENQNCQID----TQRKRCPY---CRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVE-----------WARSSIF---------------FRELKVDDQMK---LLQNCWSELLIL 342
12 -9.130[K] KOG4216 Steroid hormone nuclear receptor  ali follow..  8  13.....................................................................................................................................................................................TEARVPWSIMGHCLRTGQARMSATPTPAGEGARSSSTCSSLSRLFWSQLEHINWDGATAKNFINLREFFSFLLPALRKAQIEIIPCKI------C---GDKSSGIH----VITC----EG--------------------CKGFFRRSQQS-NATYS------------------CPRQKNCLID----TSRNRCQH---CRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAE-------------PLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYV--------EFAKRID---------------GFMELCQNDQIV---LLKAGSLEVVFI 391
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;