FFAS03 results for KOG1548

Query: [K] KOG1548 Transcription elongation factor TAT-SF1, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 .
#	Score	Template	Links and tools	%id	First	`MSSQPFWDERIHRWRCLGSEGNELIYIDEEQTWKDYDPNSLKMNKAGSTGAEVSDVTAEATEGKESSNGEDRHTKRLYESTSAEGYPSGSRNKKSKSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIYRTEDGTPKGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALRLRQQQMQQISSWDDVDEEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTLDDEEDEEKRLEKFADWLENSN`	Last
1	-116.000	`[K] KOG1548 Transcription elongation factor TAT-SF1`	`ali`	100	1	`MSSQPFWDERIHRWRCLGSEGNELIYIDEEQTWKDYDPNSLKMNKAGSTGAEVSDVTAEATEGKESSNGEDRHTKRLYESTSAEGYPSGSRNKKSKSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIYRTEDGTPKGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALRLRQQQMQQISSWDDVDEEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTLDDEEDEEKRLEKFADWLENSN`	367
2	-59.400	`[A] KOG0120 Splicing factor U2AF, large subunit (RRM superfamily)`	`ali follow..`	14	88	`.......ITRQARRLYVGNIPFGVTEEFFNQQMHLVGLAQAAGSNLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVSTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDA-------ATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSVMLQVPG---------------------LSNVVTSGPPTEVLCLLNMVTPDEL-RDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHRRE..........................`	415
3	-47.800	`[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)`	`ali follow..`	17	119	`..AQRQRALAIMCRVYVGSIYYELGEDAFAPFGPIKSIDMSWDSVTHKGFAFVEYEVPEAAQLALQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEE-------ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP-------TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDD------DLEGEVTEECGKFGAVNRVIIYQEEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSD..........................`	556
4	-45.600	`[AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)`	`ali follow..`	12	1	`......MEDEMPKTLYVGNLSRDVTEALFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAMNGRKIMGKEVKVNWATTPSSQKKDTS--------------NHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDM-------ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSY------------------------DEVVNQSSPSNCTVYCGGV-------------GLTEQLMRQTFSPFGQIMEIRVFPD--KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQP..............`	294
5	-44.400	`[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B`	`ali follow..`	12	3	`......................................................................................................TADIPPNQSIYIQNLNERIKKEELKRLFSQFGRI----------LDVVALKTPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPNTANGPSANGPQETMPPNNILFIQNL-------------ETTSMMLQLLFEQYPGFKEIRMIDAK-PGIAFVEYEDDVQASIAMQPLQGFKITPQNMVISF....................................`	229
6	-43.600	`[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)`	`ali follow..`	14	2	`.................................................................................................SGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNR----------HGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFR--------------------------------VLVSGL-------------SGSWQDLKDHMREAGDVCYADV---QKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGR.............`	202
7	-43.500	`[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)`	`ali follow..`	14	88	`.QRDPSLRKSGVGNVFIKNLDKSIDNDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEMNGMLLNDRKVFVGRFKSRKEREAELGAKAK----------EFTNVYIKNFGEEVDDESLKELFSQFGKTLS--------VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN----------------------------LYIKNLDDTID-----------DEKLRKEFSPFGSITSAKVMLEDSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQ......................`	381
8	-43.300	`[A] KOG4212 RNA-binding protein hnRNP-M`	`ali follow..`	13	1	`....................................................MAAGVEAAAEVAATIKMEEESGAPGVPSRPAQNEKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVEKVGEVTY--------VELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHAQAGRLGSTVFVANL------------YKVGWKKLKEVFSMAGVVVRADILEDKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQ..................`	296
9	-41.700	`[A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)`	`ali follow..`	12	41	`.......TDDSKTNLIVNYLPQNMTQELFGSIGEIESCKLVRDKITSLGYGFVNYIDPKDAEKAITLNGLRLQTKTIKVSYARP------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD-------QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRPSACSPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD-----------ESVLWQLFGPFGAVNNVKVIRDFCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS............................`	380
10	-41.200	`[A] KOG1190 Polypyrimidine tract-binding protein`	`ali follow..`	13	3	`..................................................GIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDS---RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVT--------NLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI-YIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVT-----------LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRP.............`	278
11	-39.700	`[R] KOG0110 RNA-binding protein (RRM superfamily)`	`ali follow..`	12	245	`.......SNLELFTIKIHNVPYNTKRQEVLKFFKPLKPYSVRLPSKVHGFCYVGFKTEKDMAKGMLKNKSFIKGKQVFFPLAPAAVDAGNAKWKHQQDSLSKEDDISESGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLD-------KLTRKIKGFGTVTYMMPEHALKAFNTLDGTDFHGRLLHLLPSKDIEKNPKEDLDENDASLSFKEKKALKLKKNAQKPLEEEGVRLDAFDEPAKKRSNTVILAKNL------------AATEISEITPIFSRFGPIGRIVL--PPSGVTALIEYCDPLEARQAFKKLAYSKFKNAPLYLEWAPEQVFTKTLSGEPVIPKSEPKPKEEV.........`	648
12	-39.700	`[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)`	`ali follow..`	14	2	`.............................................................................................................VRVYIGRLPNRASDRDVEHFFRGYGKLSDVIM---------------KNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQF--------------SNRYSRPCSTRFRLVIDNL------------TRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDDLRDAMNKLQGEDLNGRKLKCTDETRDRSRSRSPRRRSRSRSPTRSR............`	207
13	-38.900	`[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)`	`ali follow..`	13	2	`...................................................YIKMATLANGQADNASLSTN------GLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYE--------LTVLKDRTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRK----------------------------------LFVGML-------------QQSEDDVRRLFEAFGNIEECTILRGPSKGCAFVKYSSHAEAQAAINALHGSQTASSSLVVKFADTDKERTMRRMQQMAGQ..................`	247
14	-37.400	`[R] KOG0118 FOG: RRM domain`	`ali follow..`	12	80	`..................KRDMRELQELFSKLNPMAEEFVPPSLNKQGGVNGGFFTSAGSFFRNNGFAGTGNGGYGNENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVD--------CRICGD-PNSVLRFAFIEFTDEEGAMTALN-LSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMC--------------------------------ARTIYCTNI------------KKVTQSDVKIFFESFCGEVYRLRDYQHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPRSPRHP.......................`	356
15	-37.400	`[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)`	`ali follow..`	16	539	`.......................................................PIVKKVKGDDGGFKAPLPPSNAKSSSAVSSSNASSTPAPGSFAVQKAAPGTEDARTIFVSNLDFTTTEDEIRQAIEGVASIRFARKANS---------DLVHRGFAYVVMENDQKAQQALL-KDRVPVKGRPMFISANDPEKRVGFKFSTTLE---------------------------------------KSKVFVRNV------------FQATDDELKALFSKFGTVTSVRR-DGKPKGIAFVDFDTEASAQKCVASGDKLMLRERELEVALSNPPVKKDKSHGKPAAIGASLEE.............`	780
16	-36.800	`[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)`	`ali follow..`	11	6	`..DHPDQPDLDAIKMFVGQVPRTWSEELFEQYGAVYEINVLRDRSQSKGCCFVTFYTRKAALEAQALHNMKVLPGMHHPIQMKPADSEKNNAV--------------EDRKLFIGMISKKCTENDIRVMFSSFGQIEE--------CRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTCSSPMVVKFADTQKDKEQKRMAQQLQQQSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHL--PQEFG---------DQDLLQMFMPFGNVVSAKVFIDKSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK............................`	480
17	-36.300	`[A] KOG1996 mRNA splicing factor`	`ali follow..`	18	183	`.................................................................................EKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEPDRPRSPTGPSNSFLANMGGTVAHKIMQK----------GFREGQGL---KHEQGLSTALSV------------------------------EKTSKRGGKIIVGDATEKGEAQDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDED------LEVETKEECEKYGKVGKCVIFEDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYN-LDKFRVLDLAEQ.....................`	404
18	-35.900	`[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)`	`ali follow..`	14	115	`..........................................................................LATGYRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISD-------RNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMR----------------------------------LYVGSL------------FNITEDMLRGIFEPFGKIDNIVLMKDRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDDGDQELDLGSAGGRFQLMAKLAEGAG`	362
19	-35.800	`[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)`	`ali follow..`	12	1	`.........................................MESNHKSGDGLSGTQKEAALRALVQTGYSLVQENGQRKY---------------GPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYE--------MRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRG-ESHRAAAMARRKL-SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQ............`	324
20	-35.700	`[K] KOG4210 Nuclear localization sequence binding protein`	`ali follow..`	11	71	`.......................................................NIDPKSIEEYKEDAEKKKSGASEKDAQGEESTINTPTGDESGEVVKKKKKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKLSMPRVAAKNSNAMKNKGFCYMFFKNVEQMKAVLE-LSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKNPP----------------------------------SRILFVGNL------------FDVTDDLLRKHFQHCGDIVKIRMATFECKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSSSF............`	338
21	-35.000	`[A] KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins`	`ali follow..`	11	49	`..........................................REGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSP-----DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN--------ITLPVDFQGRSTGEAFVQFASQEIAEKALK-KHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGSTTGHCVHMRGL------------YRATENDIYNFFSPLN-PVRVHIEDGRVTGEADVEFATHEDAVAAMSK-DKANMQHRYVELFLNSTAGASGGAYEHRYVELFLNST.............`	384
22	-34.900	`[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)`	`ali follow..`	13	57	`..........................................RGGAERGIAPAQQPYDNNGGHRSGGGGRSGGGGTSFNGAAFTESQLMDEVPKKKFT---------GRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSG--------------KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHGAA----------------------------------------------------IRVKELSPTVS-----------NEMLYHAFSHFGDVERAVHIVDRPTGEGIVEFERKPNCNEAMAAIRDKVFSPKPLICEVLEPRD----------EDDGLAERMIPRTPGLSKERE`	293
23	-34.500	`[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	18	2	`................................................................................................NKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIR----------QIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAK......................................................................................................................................................`	112
24	-34.000	`[A] KOG0131 Splicing factor 3b, subunit 4`	`ali follow..`	10	10	`..............................................................................................GANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDR-------VTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGAN---------------------------------------------LFIGNLDPDVD-----------EKLLYDTFSAFGVIASNPKDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAE....................`	204
25	-33.900	`[R] KOG4733 FOG: RRM domain`	`ali follow..`	14	8	`.........................................QMYPQYATYYYPQYLQAKQSLVP--------------AHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILD-------KTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTN-----------------------------------------------------LYISNL--PLSMD---------EQELENMLKPFGQVISTRILRDSSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLL--CKFADGGQKKRQNPNKYIPNGRPWHREGE`	249
26	-33.800	`[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)`	`ali follow..`	14	3	`..................................................................................ASVELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLD-------KYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGRQYGRGKTGGQVR---------------------------------------------------------DEYRTDYDAGRGGYGKLLSQKIAPNTDN......................................................................`	153
27	-33.200	`[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)`	`ali follow..`	14	4	`........................................VLDIDNAEEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD-------RRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKSEKRRR..............................................................................................................................................................`	165
28	-33.100	`[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)`	`ali follow..`	13	145	`.........................................KGDHWTSKCPYKDLAAPTDVFIDKPPTGESSTMSAAPGTGKAAYVPPSMRAGADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAID-------QKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWAT.............................................................................................................................................................................`	290
29	-32.800	`[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19`	`ali follow..`	9	14	`.............................................ASKGFVDILYWVYRFQASSMAF----------------TKLGGHWKQGVNVPVSSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTE--------ARVMTNKTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLPLSLDESIEEAEKKENKMMSRSVWKDPFVDAFLMKKKNA------------------------------------------------------ALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKITEGKVGHK................................`	227
30	-32.100	`[AR] KOG1365 RNA-binding protein Fusilli, contains RRM domain`	`ali follow..`	10	312	`..........................................TDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFKSTAAEVQQVVKRCPAVANAVEAPEEKKKDCVRLRGLPYEATVQHIVTFLGDFATMVKFQ------VHMVYNNQGHPSGEAFIQMINEQAASACAAGVHNNFMSKRYIEVFQASAEENLHHLVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISPIVPGQVTQLIIYGI------------MSIGVPELVANFTTPEHTVDNVLFTHLCPGEAILTLRNRGAPPPQTSPLSQISQLSAPNFAAYSHHPQNFPLQ..........................`	609
31	-32.000	`[A] KOG4209 Splicing factor RNPS1, SR protein superfamily`	`ali follow..`	16	29	`....................................................GDLNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLTPEEKA--------EADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDR-------FSGHPKGFAYVEFTEKEGMQNALA-MTDSLLRGRQIKVDPKRTNKPGMSTTNRPPFRGR............................................................................................................................................................`	171
32	-31.000	`[R] KOG0226 RNA-binding proteins`	`ali follow..`	12	133	`.........................................LYETPAVNAIPQELLRTQALQSDIKMNFKKQTDPFKKKIKEQQAKKKFVRSGGGQVEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQK--------AKVVRERTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKERNIDVIKQKRKQKKE...........................................................................................................................................................`	298
33	-31.000	`[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15`	`ali follow..`	16	1	`.......................................................................................................MSMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLD-------PETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRRNQSYEYTERTDRYMEQQ.......................................................................................................................................................`	106
34	-30.100	`[D] KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins`	`ali follow..`	10	81	`.....SLEDVEPDALLLPEDENELLPGLIDELNFTGLPDELDDLEECDVFCTMELDVESQDNHAVDASGMQISDRGAANAFVPRKRPNTAGRVSVEHPN-----GEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYT------------ACKSRGFVMISYYDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGT------------------------------------------LVIFNVDTTVS-----------NDELLQLFGAYGEIREIRET-PNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTEV.............`	363
35	-29.800	`[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)`	`ali follow..`	21	2	`.............................................................................................................SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRP------------PGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLK......................................................................................................................................................`	97
36	-29.800	`[A] KOG4207 Predicted splicing factor, SR protein superfamily`	`ali follow..`	15	7	`......................................................................................................PPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEP-------HTKAPRGFAFVRFHDRSDAQDAEAAMDGAVLDERELRVRMARYGRRDLPRSSQEEPRGRSWGGRYGRR...................................................................................................................................................`	117
37	-29.400	`[R] KOG4208 Nucleolar RNA-binding protein NIFK`	`ali follow..`	12	1	`.......................................................................................................MAAFSRSAGPILSLN--QEDAELQKEVAQCDTVTRFRLSRK-------KRTGNSKGYAFVEFESEDVAKIVTETMNSYLFGERLLECHFMPPEKKMESISKTNHRMSTKGQVLRKKKKKVLGT.............................................................................................................................................`	115
38	-29.300	`[R] COG0724 RNA-binding proteins (RRM domain)`	`ali follow..`	13	168	`......................................................................................SRRAGARDPSSDAYRDSRERDDMCTLKIMQVNENADENSLRELLFPFAPIPRVSVVRN-------KETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPKVKE........................................................................................................................................................................`	274
39	-28.500	`[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)`	`ali follow..`	15	55	`..........................................GEHNLTLYGSTQAHGEQSSNSPSTQNG----------SLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNE-RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYAN..............................................................................................................................................................`	202
40	-27.000	`[R] KOG4454 RNA binding protein (RRM superfamily)`	`ali follow..`	17	2	`..................................................................................................EIKPTPSPPEERTIYVANFSEEVDEELLEELFIQAGPVVKVILRDV---------RDSNAKFALVEFEDELSVLFAIELMNGVRLFNQELQVKPRNGTNQEELYKRKKGEIEERVRSV.......................................................................................................................................................`	110
41	-26.500	`[R] KOG4307 RNA binding protein RBM12/SWAN`	`ali follow..`	9	499	`.DYATMMRRNGEQGIKIQQSDKKSFDTAIDGI-----PIPSVSMVPSKEQRSHEDDDKKSRRSRWENTSPIRSPRRSPLRRDNRDRSRSRSPPRRRRRSRSPRRREEHTDPVQVTNVPFRMKDEELLEWFSE--------KVRPAKLTRTFYSDGNASDRWVAEFSSESLMKRSFG--IRTLCTGRTLRLRYIDNAKADEILKIEDVYGEGKRQMNEEARLQHEVAEKDSQPSQSELMELIKSIGPRGTVLSCNGF------------KDVTLEDVVEFFNDYNSIRIRRGDDGVMTGECMLACQNQENARRASMDLDGQKLRNSVISVRII...................................`	948
42	-26.500	`[R] KOG1995 Conserved Zn-finger protein`	`ali follow..`	15	250	`...............................................................................APRRQEASYEDAATEKVKQCDADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYNIKIYTDEKGNYKGDACLAYEDPSAAHSAGGFFNNYEMRGNKISVTMAEKSAPRAPTFDQSFIILVGNMSFCNAKFMFLVSEDCLDLVSYWGFALYTHLGMTERMSVSDLIMLSLQ---------------TCECRRGGG-------RGGGGG-------GGGGGDRRRDNYSS---GNRKL........................................`	481
43	-26.100	`[R] KOG1457 RNA binding protein (contains RRM repeats)`	`ali follow..`	12	28	`............................................EEPQNLGFGRGQSCELEAGIHRGIIQWDHPPPPCHRHHHHHTYPNLLQDTVSVLFVHELKTRPGVRTLFVSGLPVDIKPRELYLLFRPFKGYEG--------SLIKLTAR---QPVGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLMATPNPSNA.......................................................................................................................................................`	188
44	-26.100	`[A] KOG0533 RRM motif-containing protein`	`ali follow..`	10	44	`...............................................................................PRRSGGSGGWKDLDAVQNHGISSRGNDSKVIRVNISNLAPTVISSDLEELFGDYRLSS---------VSVNFNEHGDSLGTGDISL-TKRDAERLVQKFSGVALDGKIMKFAVIDSSNMAGRVDFGNRSRSSPGRSSRGFQSGPRRNNGKPEDFLRDGVHAGDIKRGGAG----GGFRKGGRGGARDAKPKKTEAELDAELEAY....................................................................................`	234
45	-24.800	`[A] KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1`	`ali follow..`	13	3	`....................................................TTVSTGATAVATLRETSPPVDGHEEARLNADSDDGSHGSQDPG---------------KMFIGGLSWQTTAENLRDYFGRFGEVNECMV-------MRDPATKRARGFGFITFVDPSSVDKVLNN-REHELDGKKIDPKVAFPKRTQAKLVTKT-----------------------------------------------------KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDRHRGFGFVTFDSDEVADKVCEI-HFHEINGKMVECKKAQPKEVMLPVQLNKSRA...................`	225
46	-24.000	`[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	15	8	`.................................................................................KLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDK-------KTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPK.......................................................................................................................................................................`	119
47	-23.800	`[R] KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains`	`ali follow..`	8	157	`..........................................DRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNSRRDDRRSNLSNNDRYSDWNPGVPSNKLAILNMPNDVDNTKITLSLGKCGYL-----PQDVRTMTKFDKTKQIRTFAFVEFSNRETAEQWMTDYEGWLTLDDGRTLAVEYAKGDPAAGSGNKGDD--SMNNFVKRQTCFKCEISKDQSMELEKLGAHMVGMTPCDTLLIRGL-------------GINNSLIFDSLGALVCLSSISMIKLSSKRFAYLQMKSADEAKMLLNLTYKSPIKDKDVQVSW....................................`	437
48	-22.200	`[D] KOG2186 Cell growth-regulating nucleolar protein`	`ali follow..`	13	384	`.....................................................................................YKTAEKGSRLISAILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMD-------KDTGRGKGYGFVMFKTRKGAREALKRPEK-RMYNRIVVCNLASEKPGKAGKEQDMAE...............................................................................................................................................................`	498
49	-22.000	`[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)`	`ali follow..`	12	4	`.........................................................................................QPVPGSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIAD-------KNTGRSKGYGFVTFRDPEAARRACA--PTPIIDGRRANCNLASLGRPRPPLPYAV.................................................................................................................................................................`	112
50	-21.200	`[J] KOG0129 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	15	420	`..........................................................................DGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKA-----ESKSYFPPKGYAFLLFQDESSVQALID--------------------------ACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGV-------------PLRAVELAMIMDRYGGVCYAGIDTDPPKGAGRVAFSNQQSYIAAISALQHGEIDKRV.........................................`	638
51	-20.400	`[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins`	`ali follow..`	19	43	`.......................................................................................................................................................................................................................................................SPTLLLSNMYQRPDMITPGEHFEDFFEDLFEELGKFGEIESLNICDNHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGY............`	167
52	-19.500	`[K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)`	`ali follow..`	9	1	`............................................................MQSEESHELTDGISEEKESKETMKSQKADRKKKKLKEKLLKEASKADNRGVCYLSRIPPHMDHVRLRHILAQYGELGRIYLAPEAD-KRAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQIGGKKKS..................................................................................................................................................................................`	143
53	-19.400	`[AR] KOG0109 RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains`	`ali follow..`	10	248	`............................................RIHGAFRTKRFSVRDKEDQWTV-----------SVQRQLVYRPSTEAGHNNKELPPPLPPRGACPDDEAVHQKPAPGHRAGDPLSFQAVGKVLECDII---------------KNYGFVHIEDKTAAEDTIHNLHHYKLHGVNINVEASKNKSKASTK------------------------------------------------LHVGNI-------------TCTNQELQAKFEKYGPVIECDI----VKDYVLIHFIHMECCPQARLRTAPGMGDQCGCYQCKKEGHWSKECPVDRTGRVADFTEQCNEQYAA......`	476
54	-19.300	`[R] KOG2135 Proteins containing the RNA recognition motif`	`ali follow..`	11	336	`...............................................................................FRGAPRGRGNIRGRGGFARGGFTGAINRDNCTLQVAKIPPENTIAKLNEHFATFGTVDN--------IQVRYNGE---IDSALVTYASKFDAGKAYKVLNNRFIKAQNYRKQIQDAKERLTKEKSILSTLVQAQNQHNIILDKWMVKQKELLIKARTSTDETDKKNATKLVKHLHKKIKACKEEVDGILLKELVTDLMAHMEKFGEVFDHSVKADDGLITAVFPFRKTGDALKAMA--DGKVLNGVDLEMELKTERIEEIPSTDTNMSADQLLAAIPSNLESDEEDD.`	715
55	-18.100	`[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	16	201	`................................................................................YGRNDPVAEKIMKRAASLPTLEPPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRS--------IALVPR-----QQCAFVQYTKRNAAELAAETFNKLVIQGRKVSIKWAHSQAKQGTAAKTDRR...............................................................................................................................................................`	316
56	-18.100	`[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit`	`ali follow..`	12	6	`LD------------LYAEDLDKDFAGQAQDEF----------GGDGVDLYDDIGGPTESAASGGGGGGTPSADGAAGPGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGVLQE--------VKFFENRNGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQFESLQKTRPVPPPQQNG......................................................................................................................................................`	195
57	-17.000	`[TR] KOG4019 Calcineurin-mediated signaling pathway inhibitor DSCR1`	`ali follow..`	8	2	`...............................................................................................................................................................................................................................................EEVDLQDLPSATIACHL--DPRVFVDG----LCRAKFESLFRTYDKDITFQYFKS---KRVRINFSNPFSAADARLQLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKQ.................`	104
58	-17.000	`[K] KOG2068 MOT2 transcription factor`	`ali follow..`	18	77	`.............................................................................SEGNMDRKKIQKSKPKSSDGRKPLTSVRVVQRNLVYIVGLPLNLADEDLKEYFGQYGKVLKVSMSRTATGL--IQQFPNNTCSVYITYGKEEEAIRCIQSVHGFILDGKALKA.................................................................................................................................................................................`	190
59	-14.800	`[A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)`	`ali follow..`	12	46	`.....................................................DFEDPKDTPLPKTVETRQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHD-------QESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRG.......................................................................................................................................................`	201
60	-14.700	`[T] KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains`	`ali follow..`	13	224	`........................................................DLAQNGATFNAKASPAKPKSKPVTKPSAARESKAPAPVSEHSSAATIDQQAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGI-------QVRSYRLKGNCFGFVTFASAEAVKLVLQAESAIRIGNRRVSIEEKRGNNDNGRPA....................................................................................................................................................................`	365
61	-14.500	`[A] KOG4213 RNA-binding protein La`	`ali follow..`	15	74	`........................................................................KSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLN--------IQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCLLKFSGDLDD--------------------QTCREDLHILFSNHGEIKWIDFVRGAKEG--IILFKEKAKEALGKAK-GNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKWKSK.........`	332
62	-13.900	`[R] KOG0151 Predicted splicing regulator, contains RRM, SWAP and RPR domains`	`ali follow..`	12	104	`..........................................KGKTRNIDHFVEELKREQEIRERRNQDRENSRDHNSDNTSSSRFDELPDYFDPSGRLGSLDDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIAS--------VKIMEEEKRRERHCGFVAFMNRADGEAAKEKMQGIIVYEYELKI.................................................................................................................................................................................`	247
63	-13.600	`[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)`	`ali follow..`	10	350	`.....................................................SKEDGRKFDFDACNEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNAR-------SPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDR...................................................................................................................................................`	509
64	-13.100	`[J] KOG2314 Translation initiation factor 3, subunit b (eIF-3b)`	`ali follow..`	7	2	`....................................................AAVVDIDVLTAQLGINWSDVNLDSIQLPPGNDFGIESDDESVYQDDQS--EFDTGFGNIIVVDHLPV-VPKEKVKKIYNQLGVIKENGLL-------VDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEPPQERPYVPGPFEVLGLDTYMVFVFQENLQKWLTDDKARDQLVIRFGWNDARQKKPEPVHKRSYWTESYVQWSPIGTY----LVTLHKQGAAVWGGADTFTR---------MRYQHSMVKLVDFSPGEKY--HSQEPSNPRDASKVEIKVFD.......`	304
65	-13.000	`[A] KOG4676 Splicing factor, arginine/serine-rich`	`ali follow..`	10	29	`.........................................................................................................GGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDE--------LRLFPPDDPVSSRVCFVKFHDPDSAVVAQH-LTNTVFVDRALIVVPYA.............................................................................................................................................................................`	111
66	-12.300	`[A] KOG4008 rRNA processing protein RRP7`	`ali follow..`	7	39	`......................................................................................................KKDPSKENSIIVSNIPAFVGEGVVLAIIDQFASFEVEESFVQRS-NTADNSLSQGQLTMSITFDKPEAVIQTLALCQDVGPFTITDFLEDPEFPSVLKDSTTLYRKLFPSEEQIQEMADTYVERYDTEQTEARKEAKRKYSEPDEDGWITVTKAKKAAKSVKLKKEDVPLIGGLNN--------------KKKKVDLAYYTFQIKKNRQEKAQELLKK-FEEDRKRITQLKQARNFK............................`	259
67	-10.400	`[K] COG5175 Transcriptional repressor`	`ali follow..`	14	4	`................................................................................PHVQENLQAIHNALSNFDTSFLSEDEEDYCPLCIEPM--DITDKNFF----PCG-----------NIRQNPELNGR--------------CPACRRKYDDENVRYVTLSPEELKMERAKLARKEKERKHREKERKENEYTNRKHLSGTR---------------------VIQKNLVYVVGINPP----EEVAPTLKKYFGQYGKINKIVVNRKTPHS-VYITFGSKDDAARCIAQVDGTYMDGRLIKAAY--GTTKYCSSYLRGLPCPNPNCMFLHEPGEEADS..`	261
68	-10.200	`[R] KOG4198 RNA-binding Ran Zn-finger protein and related proteins`	`ali follow..`	16	214	`...............................................................................KDSRGHSLPSVLTQPINCQADARSFYAERSKIVHVAGLTNDVTQLELESWFTNHG-------VHPVALWTLKTEPYKSTGTGFVLFASHEDAADALA-FNGYCLGDRMLEIIPSSTKVLDKASDILIPFPSSKNRPR.......................................................................................................................................................`	343

FFAS is supported by the NIH grant R01-GM087218-01

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