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Query: [R] KOG1855 Predicted RNA-binding protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSPRDKAEQVYEVKAPHAGAEGHTFLVSPVDPTPILAPILTAVPVMKAPDSPASMDKTKEMEELDDEQPSCSSQAVVPLSSSLPCKLLRMHARRSAQALLHQMESMDSQLGSSNGSTSEDTSPSAPPMSPTDHQLVDVGMGSSIGDSDESSEEGDELKPLAVDNHIIAEVDLTERQTTPPAVLSEANLEKFRKHQMDNIYLHPNFTLDASPPPAVAPANSPVLEAKRTHRSFLTMKKEKEVEPPQEKEQEVPVHQEQDTEPQGPNEIDTLDPSLIPSEELAAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVSLKLVSSFKRVRQLTREWKVVGDAVRRKSRKIELNDVGTKVRRIEPLPSFDETMPSRTIVACDLPLDKLTIEKVSDLFSPCGEIALIRILKPGMAIPVDVRQFMNKYPELQQKECALVEYLESSSARDARHLNGPFQVYEMVAPKKKTGKKAAVIQIAAPVARMVENYRYYNDANYERSRGGSFSGHETVPDLRFKLKRNNSDFQPSYYQQTGPSYHANPYQHYQPRGSIGNQNQEVGPNGFFGYGPRRYSNTSTISANTAAALGDVSPISSAVNSGGNPMVSGISSLQRRLSNCSEQNYTPEVNPSMSRRASNCSETGGVPQRRDSNCSESCPCSRRVSDFAQTTDTSYRKTSVCSNGSCPGNNQNQERRFSNGSMQFERTFSNASESSGFYRRPSNDFNIEREPIQTDQLVGGGGGGYQVWPRRYSNNFQQLSSKLAAYDNAQYIGGRRISTDSGYDRRCSFGSEGFEGSPRSRTGSFLSNYKHGGGDGYDGQPRSRTGSFLDGSPRSRSGSFAQRAAESLVRTPMGPDGSKGFGQRARKFGQTISPVNLast
1 -189.000[R] KOG1855 Predicted RNA-binding protein  ali  100  1MSSPRDKAEQVYEVKAPHAGAEGHTFLVSPVDPTPILAPILTAVPVMKAPDSPASMDKTKEMEELDDEQPSCSSQAVVPLSSSLPCKLLRMHARRSAQALLHQMESMDSQLGSSNGSTSEDTSPSAPPMSPTDHQLVDVGMGSSIGDSDESSEEGDELKPLAVDNHIIAEVDLTERQTTPPAVLSEANLEKFRKHQMDNIYLHPNFTLDASPPPAVAPANSPVLEAKRTHRSFLTMKKEKEVEPPQEKEQEVPVHQEQDTEPQGPNEIDTLDPSLIPSEELAAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVSLKLVSSFKRVRQLTREWKVVGDAVRRKSRKIELNDVGTKVRRIEPLPSFDETMPSRTIVACDLPLDKLTIEKVSDLFSPCGEIALIRILKPGMAIPVDVRQFMNKYPELQQKECALVEYLESSSARDARHLNGPFQVYEMVAPKKKTGKKAAVIQIAAPVARMVENYRYYNDANYERSRGGSFSGHETVPDLRFKLKRNNSDFQPSYYQQTGPSYHANPYQHYQPRGSIGNQNQEVGPNGFFGYGPRRYSNTSTISANTAAALGDVSPISSAVNSGGNPMVSGISSLQRRLSNCSEQNYTPEVNPSMSRRASNCSETGGVPQRRDSNCSESCPCSRRVSDFAQTTDTSYRKTSVCSNGSCPGNNQNQERRFSNGSMQFERTFSNASESSGFYRRPSNDFNIEREPIQTDQLVGGGGGGYQVWPRRYSNNFQQLSSKLAAYDNAQYIGGRRISTDSGYDRRCSFGSEGFEGSPRSRTGSFLSNYKHGGGDGYDGQPRSRTGSFLDGSPRSRSGSFAQRAAESLVRTPMGPDGSKGFGQRARKFGQTISPVN 867
2 -48.700[A] KOG4213 RNA-binding protein La  ali follow..  17  2.............................................................................................................................................................................................................................................................................AENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKALMEISEDKTKIRRSPSKPEYKNDVKNRSVYIKGFPTD-ATLDDIKEWLEDKGQVLNIQMRRTLHK---------------AFKGSIFVVFDSIESAKKFVETPGKYKETDLLILFKDDYFAKKNEERKQNKVEAKLRAKQEQEAKQKLEEDAEMK.............................................................................................................................................................................................................................................................................................................................................................................. 224
3 -43.500[OJ] COG5193 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation  ali follow..  13  64.SSDKSKSEDYQPSNVNVWALRKEKMIPKKHSHVKQEKRFSKSLQLQDPNVWPSPEIAEKQVEDRKLSDDSQKPLAPKANGKEKWVTITPNFTHTPISNRKSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASRSIDSSNPSAEYRDDINNTFGSQTVSSANGKEVPQTSEDSSSQAPHHSSSSGHAPSQQGGNKHSYKKSDSQQSFHHKGRNT------------------RKGQRHNNGFYRNIANNIQGPFPNYPVVVNGNGVNPYLCDVQAFLTSQLEYYFSIENLCKDMFLRKHM--DDEGYVPLAFLASFNRIKSFSTDLNLLHAAC-KASDIIDVAIDSIKVRRKETWSPWILPSESRLKFEMAKYPQINSSSSMSPLASSISNLTISPPFIPSSV-----------DSIIKRDVQTEVEDKLT............................................................................................................................................................................................................................................................................................................................................................................................................................................ 474
4 -31.300[T] KOG2591 c-Mpl binding protein, contains La domain  ali follow..  11  5......................................................................................................................................................................................................................................................................................VEVASKLNPNAKVWQEIAPGNTDATPVTHGTESSWHEIAATSGAHPEGNAELSEDICKEYEVMTRNTTGIEESTDGMILG----------PSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISC-------------------EFAHNSNWYITFQSDTDAQQAFKYLREEKTFQGKPIMARIKAINTFFAKNGYRLMDSSIYSHPIQTQAQYASNGSFVNGFNSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDGQLNRYSSRNFPAERHNPTVTGHQEQTYLQKETSTLQVEQNGDYGRGRRTLFRGRRRREDDRISRPHPSTAESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGVYKEKDNEELTISCPVPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQTTIPVSPPSTTKPSREPRKLSYAEVCQKPPKEPSSVLVQPLRELRSNVVSPTKNEDNGAPENSVE-----------KPHEKPEARASKDYSGFRGNIIPRGAAGKIREQRRQFSHRAIPQGVTRRNGK--QYVPPRS 603
5 -14.800[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)  ali follow..  11  115...........................................................................................................................................................................................................................................................................QSMAAQRQRALAIMCRVYVGSIYYELGEDTI-RQAFIKSDMSWDSVAFV------EYEVPEAAQLALEQMNSVML-GGRNIKVGRPSNIGQAQPIIDQLAEEARANRIYVASVHQD-LSDDDIKSVFEAFGKIKSCTLARDPTTG--------------KHKGYGFIEYEKAQSSQDAVSSMN................................................................................................................................................................................................................................................................................................................................................................................................................................. 288
6 -14.400[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)  ali follow..  12  97.............................................................................................................................................................................................................................................................................AFTESQLMDEVPKKKFTGRCRLFVG--NLPNETELKELFSP---GDIECYLSGAFLRLDTRAH-----AESAKEAIDGRIIHGRQVRVR----------AVHGAAIRVKELSPT-VSNEMLYHAFSHFGDVERAVHIVDEKGRP---------------TGEGIVEFERKPNCNEAMAAIRD................................................................................................................................................................................................................................................................................................................................................................................................................................ 251
7 -14.200[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)  ali follow..  11  554..................................................................................................................................................................................................................................................PLPPSNAKSSSAVSSSNASSTPAPGSFAVQKAAPGTEDARTIFVSNLDFTTTEDEI-RQAI-IRFARKANSAYVVMENDQKAQ--QALLKDRVPV------KGRPMFISANDPEKRVGF---KFSTTLEKSKVFVRNVHFQ-ATDDELKALFSKFGTVTSVRRVTHKDGKP---------------KGIAFVDFDTEASAQKCVASGDKLMLRERELEVALSNPPVKKDKSHGKPAAIGASLEEDGPRKGHAAKLQLVPRAITNKTPQITARLDAMDVSEGTSTSQPLSN............................................................................................................................................................................................................................................................................................................................................... 826
8 -13.200[A] KOG0131 Splicing factor 3b, subunit 4  ali follow..  12  10..................................................................................................................................................................................................................................................................GANLLGQHSAERNQDATVYVGGLDAQLSEELWELFVQ-PVVNVYVPKDRVTNLHQNY-----FIEYRSEED--------ADYAIKVLNMIKLH--GKPIRVNKASQDKKSLDVGANLFIGNLDPD-VDEKLLYDTFSAFGVIASNPKIMRDPDTGNS-------------RGFGFISYDSFEASDAAIESMT................................................................................................................................................................................................................................................................................................................................................................................................................................. 175
9 -12.400[A] KOG4209 Splicing factor RNPS1, SR protein superfamily  ali follow..  12  1....................................................................................................................................................................................................................................................................................................MSDDIIDDDVLNIEDMTGDDADLSAIEG--DLNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLTP--EEKAEADAKSVYVGNVD--GATAEEIEQHFHGCGSVSRVTIQCDRFSGHP--------------KGFAYVEFTEKEGMQNALAM................................................................................................................................................................................................................................................................................................................................................................................................................................... 138
10 -12.100[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)  ali follow..  15  34......................................................................................................................................................................................................................................................................NGLSHSPGNPSTIPMKDHDAIKL-KDLKPLFEELTVLKD----RFTGMHK-AFL------TYCERESALKAQSALQKTLPGMNRPIQVKPADSE-SRGGSSCLRQPPSQDRKLFVGMLNKQ-QSEDDVRRLFEAFGNIEECTILRGPDGNS---------------KGCAFVKYSSHAEAQAAINALH................................................................................................................................................................................................................................................................................................................................................................................................................................. 213
11 -11.900[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)  ali follow..  19  156.......................................................................................................................................................................................................................................................................................QLAARIRPRLEDFFSDVRIISD----RNSRRSK-AYV------EFCEIQSVPLAIGLTGQRL--LGVPIIVQASQAEKNRLAAMANNLQKGNGMRLYVGSLHFN-ITEDMLRGIFEPFGKIDNIVLMKDSDTGRS--------------KGYGFITFSDSECARRALEQLN................................................................................................................................................................................................................................................................................................................................................................................................................................. 309
12 -11.900[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)  ali follow..  12  73.................................................................................................................................................................................................................................................................................................................................................SNSPSTQNGSLTQTEGGAQTSQTQSSENSESKSTPKRLHVSNIPFR-FRDPDLRQMFGQFGKILDVEIIFNERGS----------------KGFGFVTFENSADADRAREKLH................................................................................................................................................................................................................................................................................................................................................................................................................................. 172
13 -11.800[R] KOG4733 FOG: RRM domain  ali follow..  12  50.....................................................................................................................................................................................................................................................................SSSNSGWDQLSKTNLYIRGLPPHTTDQLVKLCQP-KIVSTKAILDKTTNKCKGY-----FVDFDSPAA--------AQKAVSALKASGVQAQMAKQQEQDP----------TNLYISNLPLS-MDEQELENMLKPFGQVISTRILRDSSGTS---------------RGVGFARMESTEKCEAVIGHFN................................................................................................................................................................................................................................................................................................................................................................................................................................. 202
14 -11.600[A] KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1  ali follow..  10  28.........................................................................................................................................................................................................................................................................ARLNADSDDGSHGSQDPGKM-ENLRDYFGECMVMRDP------TKRARGF-----FITFV-------DPSSVDKVLNNREH--ELDGKKIDPKVAFPKRTQAKLVKTKKVFIGGLSAT-STLEDMKQYFETYGKVEDAMLMFDKATQRH--------------RGFGFVTFDSDEVADKVCE.................................................................................................................................................................................................................................................................................................................................................................................................................................... 193
15 -11.600[R] KOG0110 RNA-binding protein (RRM superfamily)  ali follow..  12  645.......................................................................................................................................................................................................................................................KEEVKPEEKPIVNDAKPDEEDSRAEDADDEPEPNTTLFLRNLNFKTVQETV-EKHF---EIAKRRDGFI------QFKKSSVAEHALKNLQLTHIDGNP-VELKRSDRVLKTQDN-LASQKKQTGTKILVRNIPFQ-AQYREVRDIFKAFGELRSLRIPKKATTGED------------AHRGFGFVDYMSKAEAKRAFDALSASTHLYGRRLVLEWSANDDNQDVEELRKRTAAKFDGSQAATAAKRSRKSFFDVEGSVQPNQDDDEEEEQ............................................................................................................................................................................................................................................................................................................................................................ 918
16 -11.500[D] KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins  ali follow..  17  188............................................................................................................................................................................................................................................................................................FVRNINSSVEDSEL-SALFIRSYTACKSRGFV----MISYYDIRA--------AHAAMRALQNTLLRKRTLDIHFSIPKENSEKDMNQGTLVIFNVDTT-VSNDELLQLFGAYGEIREIRETPNR-------------------RFHRFIEYYDVRDAETALKALN................................................................................................................................................................................................................................................................................................................................................................................................................................. 327
17 -11.400[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)  ali follow..  15  1.............................................................................................................................................................................................................................................................................................................................................................MAYQPVPGSGFHYLNSPFGDTTFTKVFVGGLAWE-TQSETLRQHFEQYGEILEAVVIADKNTGRS--------------KGYGFVTFRDPEAARRACA.................................................................................................................................................................................................................................................................................................................................................................................................................................... 83
18 -11.300[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19  ali follow..  14  1.........................................................................................................................................................................................................................................................................................................MESRHFATALVFLASKGF-----DILYWVYRF-------------QASSMAFCTKLGGHWKQGVNVPVSSLRYMSTKLYIGGLSPG-TDEHSLKDAFSSFNGVTEARVMTNKVTGRS--------------RGYGFVNFISEDSANSAISAMN................................................................................................................................................................................................................................................................................................................................................................................................................................. 125
19 -11.200[K] KOG4210 Nuclear localization sequence binding protein  ali follow..  13  82...............................................................................................................................................................................................................................................EDAEKKKSGASEKDAQGEESTINTPTGDESGEVVKKKKKDENKYGVIGNLSFDTTKDDL-VRFFMPRVAAKNSNCYM------FFKNVEQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKNPPSRILFVGNLSFD-VTDDLLRKHFQHCGDIVKIRMATFEDSGKC--------------KGFAFIDFKNEEGSTNELKDKS................................................................................................................................................................................................................................................................................................................................................................................................................................. 301
20 -11.100[A] KOG4212 RNA-binding protein hnRNP-M  ali follow..  12  45...............................................................................................................................................................................................................................................................QNEKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSL-KDLVLLMDAEGKSRGC-----VVEFKMEESMKKAAEVLNKHSL-SGRPLKVKEDPDGEHARRAMQK-QAGRLGSTVFVANLDYK-VGWKKLKEVFSMAGVVVRADILEDKDGKS---------------RGIGTVTFEQSIEAVQAISMFN................................................................................................................................................................................................................................................................................................................................................................................................................................. 265
21 -11.100[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)  ali follow..  13  173...............................................................................................................................................................................................................................................................FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDELKELFSQFGKTLSVKVMRDPNGKSKGF-----FVSYEKHEDANKAVEEMNGKEISGKI-IFVGRAQKKVERQAELQERISRYQGVNLYIKNLDDT-IDDEKLRKEFSPFGSITSAKVMLEDGRS----------------KGFGFVCFSSPEEATKAVTEMN................................................................................................................................................................................................................................................................................................................................................................................................................................. 354
22 -10.900[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)  ali follow..  16  3....................................................................................................................................................................................................................................................................................................................SNHKSGD-----LSGTQKEAA--------LRALVQRTGYSLVQENGQRKYGGPP--DAAPPERGCEIFIGKLPRD-LFEDELIPLCEKIGKIYEMRMMMDFNG---------------NNRGYAFVTFSNKVEAKNAIKQLNN................................................................................................................................................................................................................................................................................................................................................................................................................................ 118
23 -10.400[A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)  ali follow..  13  36.......................................................................................................................................................................................................................................................................QTGATTDDSKTNLIVNYLPQNMTQEFRSLFGS-EIESCKLVRDKITGQSLGY-----FVNYIDPKD--------AEKAINTLNGLRLQTKTIKVSYARP---SSASIRDANLYVSGLPKT-MTQKELEQLFSQYGRIITSRILVDQVTGVS--------------RGVGFIRFDKRIEAEEAIKGLN................................................................................................................................................................................................................................................................................................................................................................................................................................. 194
24 -10.300[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)  ali follow..  16  2...........................................................................................................................................................................................................................................................................NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDL-RELFVYENVLRDRSCFV------TFYTRKA--------ALEAQNALHNMKVLPGMHHPIQMKP-SEKNNAVEDRKLFIGMISKK-CTENDIRVMFSSFGQIEECRILRGPDGLS---------------RGCAFVTFTTRAMAQTAIKAMH................................................................................................................................................................................................................................................................................................................................................................................................................................. 169
25 -10.200[R] KOG0118 FOG: RRM domain  ali follow..  14  153......................................................................................................................................................................................................................................................................QGKRRMNARTSMAQREDVIRRTVVSDLDQQVTEEQL-AGLF-------VSCGQVDCRICGDPNSVLRFATDEEGAMTALNLSGTMLKVLPSKTAIAPVNP-TEDEREMCARTIYCTNIDKK-VTQSDVKIFFESFCGVYRLRLLGDYQHS----------------TRIAFVEFVMAESAIAALNC................................................................................................................................................................................................................................................................................................................................................................................................................................... 329
26 -9.940[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)  ali follow..  14  2.....................................................................................................................................................................................................................................................................SGWADERGGEGDGRIYVGNLPTDVREKLEDLFYKYGRIREIELKNRHGLVPFAFV------RFEDPR----DAEDAIYGR--GQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRVLVSGLPPS-GSWQDLKDHMREAGDVCYADVQK---------------------DGVGMVEYLRKEDMEYALRKLD................................................................................................................................................................................................................................................................................................................................................................................................................................. 166
27 -9.810[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B  ali follow..  14  15.................................................................................................................................................................................................................................................................................QNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKK-SGQETMPPNNILFIQNLPHE-TTSMMLQLLFEQYPGFKEIRMID-------------------AKPGIAFVEYEDDVQASIAMQPLQ................................................................................................................................................................................................................................................................................................................................................................................................................................. 215
28 -9.660[A] KOG4207 Predicted splicing factor, SR protein superfamily  ali follow..  16  12..................................................................................................................................................................................................................................................................................................................................................................................GMITLKVDNLTYR-TSPDSLRRVFEKYGRVGDVYIPLEPHTKAP--------------RGFAFVRFHDRSDAQDAEAAMD................................................................................................................................................................................................................................................................................................................................................................................................................................. 76
29 -9.650[A] KOG1190 Polypyrimidine tract-binding protein  ali follow..  20  2........................................................................................................................................................................................................................................................................................................................DGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNS----SAANGNDSKKFKGDSRSAGVPSRVIHIRKLPID-VTEGEVISLGLPFGKVTNLLM--------------------LKGKNQAFIEMNTEEAANTMVNYYT................................................................................................................................................................................................................................................................................................................................................................................................................................. 115
30 -9.580[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15  ali follow..  11  2...............................................................................................................................................................................................................................................................................................................................................................................SMTAGNVVFVGNIPYD-VSEQQMTEIFNQVGPVKTFKLVLDPETGSG--------------KGYGFCEFFDSETTAMAVRKLNNSE.............................................................................................................................................................................................................................................................................................................................................................................................................................. 72
31 -9.540[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)  ali follow..  22  1....................................................................................................................................................................................................................................................................................................................................................MFASVELSSYRDQHFKGSRSE---QERSLRDSCTLYVGNLSFY-TTEEQIHELFSRCGDVRVIVMGLDKYKKTP--------------CGFCFVEYYVRSEAEAAMRFVN................................................................................................................................................................................................................................................................................................................................................................................................................................. 92
32 -9.530[R] KOG4307 RNA binding protein RBM12/SWAN  ali follow..  9  224....................................................PQFPPEKQFGNKLGNNNDVSSRENHIQGSGNERVQGGDSWRDTSFNQPPRNDFKGNYNNAYSSNKYKNNYKAPEFNNDFNGGNKFNQFPPRNAQSTDLSENRAAPPQTGRKTLMPTPQAPFQNAPAPFTNGPSDDVNRPFQTGPPGNLGRNGPPPFQAGVPPPVIQNNMGRPIAPPAAMVRPPPQNFPGGAGGALPVFQAPVMTPIVPPVNKPMGAAAVEKFYIELTRLPTDLLRPLEA-FIHPTAPLTLSSVKTV--GPGG-IHMHTIIRLDS-TMMRRNGEQGIKIQQSDKKSFDTAIDGIPIPRRSPLRRDNRDRSRSCVQVTNVP--RMKDEELLEWFSEKVRPAKLTRTFYSDGNA---------------SDRWVAEFSSESLMKRSFG.................................................................................................................................................................................................................................................................................................................................................................................................................................... 664
33 -9.400[A] KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins  ali follow..  18  25..............................................................................................................................................................................................................................................................................................DEVQRFFSDCKIQNG-----RFIYTREGFVELESEDEVKL--ALKKDRETM------GHRYVEVNNVEMDWVLKHTGPNSPDTANDGFVRLRGLP--GCSKEEIVQFFSGLEIVPNITLPVDFQG---------------RSTGEAFVQFASQEIAEKALKKHKE................................................................................................................................................................................................................................................................................................................................................................................................................................ 174
34 -9.380[AR] KOG1365 RNA-binding protein Fusilli, contains RRM domain  ali follow..  13  191..............................................................................................................................................................................................................................................................................................HHVAQFFAGLDIVPGGI---ALCLSSEGRRNGEVLVQFSSQESRDL-------ALKRHSRYIEVDEFMHVATGSSTEAMEFVSANAIIVRMRGLP--DCTDAQIRTFFEPLKLTDKILFITRTDGRP---------------TGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFKSTAAEVQQVVKRCNLINSSPAVANAVEAPEEKKK................................................................................................................................................................................................................................................................................................................................................................................... 384
35 -9.340[R] KOG4454 RNA binding protein (RRM superfamily)  ali follow..  21  8...............................................................................................................................................................................................................................................................................................................................................................................SPPEERTIYVANFSEE-VDEELLEELFIQAGPVVKVILRDVRDSN----------------AKFALVEFEDELSVLFAIELMN................................................................................................................................................................................................................................................................................................................................................................................................................................. 73
36 -9.320[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)  ali follow..  11  3.....................................................................................................................................................................................................................................................................................................................................................................................RVYVGNLDPR-VTERELEDEFRSFGVIRSVWVARRP-------------------PGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPYRARDEVPYANGNGLKDVRRSRS........................................................................................................................................................................................................................................................................................ 196
37 -9.130[U] KOG1091 Ypt/Rab-specific GTPase-activating protein GYP6  ali follow..  8  244..............................................................................................................................................................................................................................................................................................SELGIVLSEKFMEHDAYMFDALMSGIHGCFAMASFFSYSPASGSHTGLTPVLEACSAFYRILAVVDSSSHLVELGVEPQY------RVLFGREFL-----LQDLLLVWDE--------IILADNSARTDEDSRNQNFRIFDCPRGTLVLG-STENATCCLQRLLNFPENIDLNKIIQKAKLLQALVLDTDMLSALSINGVFDQSNFVPARTKSCSTSPRSPLIIAPESYWEKKWRVLHKAEEEENKICLEKQTPPTQKKKRWLNVTKLFRAVIDLSHHKLGIGERKANSSPVTQSLLEDSSEQLNVDCHVTVNKENIHPQETEENIMEFHSADEESIVSGSSPSEESSFVSLDPTSPVRCSTKIENDSVSSAGSNLLPDEDDKSIVSISEENSSVSSDPISPAIDSNYSGKYLDCCTGSENDKDQQTSVNSPLSVSPHRRNEYPVTQSDEDVSTDKSVGITKEYKLLHGIVQLKRTLSSEETSHRKASDATKTNDVKIKKNQIGCYSESHPQALSSGDSSQNLRKTLKNLGQSIELVFQQEPCLVPAGLIGNLAKTNLIEKGQ----KELRKLSNLLSEM. 840
38 -9.070[R] KOG0226 RNA-binding proteins  ali follow..  13  154.................................................................................................................................................................................................................................................................................................................................SDIDKMNFKKQTDPFKKKIKEQQAKKKFVRSGGGQVWEDPSLAEWDEN--DFRVFCGDLGNE-VSDELLAKAFRKYPSFQKAKVVRESRTNKS--------------KGYGFVSFRDSEDYVRAMREMD................................................................................................................................................................................................................................................................................................................................................................................................................................. 265
39 -9.030[A] KOG0120 Splicing factor U2AF, large subunit (RRM superfamily)  ali follow..  12  74..............................................................................................................................................................................................................................................................PDTPQTAVPVVGSTITRQARRLYVGNIPFGV-EEMMEFFNGLAQAAGSPVLACQINLDKNF-----FLEFR-------SIDETTQAMAFDG--INLKGQSLKIRRPHDYQPMPGITDTHKIFIGGLPNY-LNDDQVKELLLSFGKLRAFNLVKDAATGLS--------------KGYAFCEYVDLSITDQSIAGLN................................................................................................................................................................................................................................................................................................................................................................................................................................. 269
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.