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Query: [S] KOG2172 Uncharacterized conserved protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGGGEKRKSSFKNLANAKKRRTGPHLPSSILKTIANEKRPLNSDEGDDEIDSAYGDFYEYEEGVPEEESRKNNRYERVVNYEFELAEDCEDENVESEDDDDDDDDDDDDRHSRMLKNVTELPISAFQGESKNKRVVFTEPYPESEFNPTRDVLEGKSLTTIDDFMEPLQGLHGNSQLSNMISRMRKDTQSLVHAPLPKPEQERLERDVANELVYKGFDIWVPLVKRNREAPTIYFNQDVNVGYSTVGAIASQFHPRTEFEMKMASLLDDHEILEAHKEDGARLLEFNEVSMEDHIKRRNHVAKMRSMLFRVDLKHKRIKQIKSKTYHRLKNKDLNQSGVGAFMEPAMAKEEAKKQEARRVKERMTLKHKNTGQWAKRMLSRGLNRKYDVTQAALSKQLQIHATLSRKMNSTKDESSSDEEDLNDGSDQDTSKLIAEAKEKILKTVDDDEVPISRLMSLPFMARAVKKKNEEAKEEGKRDIEELEKFGGAETSKKSTNVVGRRVFGAEAPKESEKESDNLFDNSDSSDNDMEDNELEAVKDNASPARNTETIMEAEKLDDIAGNPASKTTFDVALYASGSWKKMTGCKNAESKKASKTHVPISQSQDKKESSDSESDDSESDDSESEAEQMVDGILTCGSKETYEIPCQAELVSRAFAGDDVEGDFEKDKQEVLNQEVPEPEKPVQVAGWGHWTNNQNKRGLPSRIVREHEEAKKTREQALRKRKDASFKHVIISEKVDKKAEKLQTKSLPYPYTSKEVFEQSMRMPIGPEFNPTTIVGVLNRPEVVKKAGVIIKPVKFEEVNPNDEHPRSHQKQKPKKKGGKLast
1 -187.000[S] KOG2172 Uncharacterized conserved protein  ali  100  1MGGGEKRKSSFKNLANAKKRRTGPHLPSSILKTIANEKRPLNSDEGDDEIDSAYGDFYEYEEGVPEEESRKNNRYERVVNYEFELAEDCEDENVESEDDDDDDDDDDDDRHSRMLKNVTELPISAFQGESKNKRVVFTEPYPESEFNPTRDVLEGKSLTTIDDFMEPLQGLHGNSQLSNMISRMRKDTQSLVHAPLPKPEQERLERDVANELVYKGFDIWVPLVKRNREAPTIYFNQDVNVGYSTVGAIASQFHPRTEFEMKMASLLDDHEILEAHKEDGARLLEFNEVSMEDHIKRRNHVAKMRSMLFRVDLKHKRIKQIKSKTYHRLKNKDLNQSGVGAFMEPAMAKEEAKKQEARRVKERMTLKHKNTGQWAKRMLSRGLNRKYDVTQAALSKQLQIHATLSRKMNSTKDESSSDEEDLNDGSDQDTSKLIAEAKEKILKTVDDDEVPISRLMSLPFMARAVKKKNEEAKEEGKRDIEELEKFGGAETSKKSTNVVGRRVFGAEAPKESEKESDNLFDNSDSSDNDMEDNELEAVKDNASPARNTETIMEAEKLDDIAGNPASKTTFDVALYASGSWKKMTGCKNAESKKASKTHVPISQSQDKKESSDSESDDSESDDSESEAEQMVDGILTCGSKETYEIPCQAELVSRAFAGDDVEGDFEKDKQEVLNQEVPEPEKPVQVAGWGHWTNNQNKRGLPSRIVREHEEAKKTREQALRKRKDASFKHVIISEKVDKKAEKLQTKSLPYPYTSKEVFEQSMRMPIGPEFNPTTIVGVLNRPEVVKKAGVIIKPVKFEEVNPNDEHPRSHQKQKPKKKGGK 822
2 -119.000[S] COG5644 Uncharacterized conserved protein  ali follow..  20  133..DENELVDLDTLLDNDQPEKNESNTASTIRPPWIGNNDHATDKENLLESDASSSNDSESELTDSADNMNESDSESEIESSDSDHDDGENSDSKLDNLRNYIVSLNQKRKKDEADAESVLSSDDNDSIEEISIKKVKYDPHETNKESEYNLIGSSEKTIDITDLLDSIPMNEQLKVSLKPLVSESSSSSKKLDAPLAKSIQDRLERQAAYEQTKNDLEKWKPIVADNRKSDQLIFPMNETAPVPSNNGLASSFEPRTESERKMHQALLDAGLENESALKKQEELALNKLSVEEVAERTRQLRFMRELMFREERKAKRVAKIKSKTYRKIRKNRKEKEMALIPKSEEDLENERIKSEEARALERMTQRHKNTSSWTRKMLERAS--HGEGTREAVNEQIRKGDELMQRIHGKEISEMDGEDVSEFSDSDYDTNEQVSTAFEK--IRNEEEPKLKGVLGMKFMRDASNRQKALVQDEMQAFEDELAGVPNEDDTSQKGEDNNTGRRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAEARKKKESPLEATEETNPWLQVPDQRTSSAKKLDKNSSKADKKNHKLKMDKVASLQELVEEPKVQPDLIFEEKAFESASEAESDVDVSVPMLKPTKGRLSIKQRELVAKAFAGDDVVAEFEKDKEDWVQEDAPK-EEDHSLPGWGSWGGVGV------KQRKTKPKVKKIAGLDPSKRKDSKLKHVIINEKRNKKAAKLTADSVPFPFESREQYERSLNLPMGPEWTTRASHHKAVAPRVVTKRGKVINPIKAPN...................... 929
3 -11.300[J] KOG0650 WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis  ali follow..  11  5..LALKRRGKDSEPTNEVVASSEASENEEEEEDLLQAVKDPGEDSTDDEGIDQEYHSDSSEELQFESDEEGNYLGRKQSSSAEEDEESSDEEDNEEEESTDGEEVEDEEKDSKSKQTDDKPSGSGAASKKALTAELPKRDSSKPEYQDSDTSDEEDIRNTVGNI------------------------------PMHDWDAKKIIKPPQGDQIDEFLRKWR-TVKDPLTGQDVRL---------------------TDEDIALIKRIVSGRIPNKDHEEYEPWIEWFTSEVEKMPIKNVPDHKRSFLPSVSEKKSRMVHALKMGWMKTTEEVEREKQAKRGPKFYMLWETDTSREHMRRIHDPVSA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 334
4 -9.700[T] KOG2290 Rhomboid family proteins  ali follow..  8  2......................................................................................................................................................................................................................SEARRDSTSSLQRKKPPWLKLDIPSAVPLTAEEPSFLQPLRRQAFLRSVSMPAETAHISSPHHELRRPVLQRQTSITQTIRRGTADWFGVSKDSDSTQKWQRKSIRHCSQRYGKLKPQVLRELDLPSQDNVSLTSTETPPPLYVGPCQ--------------------------LGMQKIIDPLARGRAFRVADDTAEGLSAPHTPVTPGAASLCSFSSSRSGFHRLPRRRKRESVAKMSFRAAAALMKGRSVRDGTFRRARRRSFTPASFLEEDTTDFPDELDTSFFAREGILHEELSTYPDEVFESPSEAALKDWEKAPEQADLTGGALDRSELERSHLMLPLERGWRKQKEGAAAPQPKVRLRQEVVSTAGPRRGQRIAVPVRKLFARE----------------------------------------------KRPYGLGMVGRLTNRTYRKRIDSFVKRQIEDMD-PFFTYW----------------------------------TFVHSLV-----------TILAVPVGFSQHETVDSVLRNRGVYE-KYVQQENFWIGPSSLIHLGAKFSPMRQDPQVHSFIRSAREREKHS...... 499
5 -9.230[R] KOG2295 C2H2 Zn-finger protein  ali follow..  8  167..............................................................................................................................................................................................................................................................................................ENISDSEVMRKYTEYK----------------TDFKRQQLNEFFVAHKDEEWFKNKYHPEDSVKRSEEQGFLQRRTDVFMELLENGTIGSVKVDSSQADALIRVLDTCVIKLEGGTDEDLKVLDEKPKDPVVYERKAEQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTS-LAPSITRSEIEAVCNR---LRVAIADPLVERRWYRRGW..................................................................................................................................... 560
6 -8.820[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  6  445...................................................................................................................................................................................................................................................................EVEFEEVMSRNRTVSSSAIARAVSDAAAGEYSSAIETLVTAISLIKQSKVAHDERCKTLHGIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSRERERDRDRERERDGGRSVRPRKSPEPVVAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAGGSMEKPRGQSAWDIIDTDAHWIIKQQTTSIPAPPSSQQ................................................................................................................................................................................................................................................................................................................................ 695
7 -8.710[U] KOG0946 ER-Golgi vesicle-tethering protein p115  ali follow..  8  508...............................................................................................................................................................AVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLNDNSLESYMKEKLKQLIEKRIENFIEKLGFISKHELYS-------RASQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDKKEEEVKKTLEQHDNI--VTHYKNMIREQDLQLEELRQQVSTLKCQNEQLQTAVTQQVS-QQHKDQYNLLKIQLGKDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSVEVQGETETIIATKTTDVEGRLSALLQETKELKNEIKALSEERTAIKEQLDSSNSTIAILQTEKDKLELEITDSKKEQDDLLVLLADQDQKILSLKNKLKDLGHPVEEEDELESGDQEDEDDESEDPGKDLDH.................................................................................................................................................................................................................. 961
8 -8.020[R] KOG2030 Predicted RNA-binding protein  ali follow..  8  305...............................................................................................................................................................AVDEFYSTQESQKIDMKTLQQEREALKK--------LSNVKNDHAKRLEELTKVQDVDRKKAELITSNNAIRAVQSAIASQLSWPDIHELVKE-ANGDAVASSIKQLLMLSDPYDNDEDDDLKDPEVTVVDVDLALSAWANARRYYDMKRSAAQKEKKTVDASQKALKSAERKTQQTLKEVRTISNIVKARKVFWFEKAQQNELIVKRYMRPKDYVHAEIQGASS-QNPTGEEIPPKTLLEAGSMAISYSVAWDAKVVTNSTSDQVSKTAPTGEYLATGSFMIRGKKNFLPSCHLTMGLSLLFKLEDSFIERHLGERKVRSLEDDQIDPNVKENEVEHDLLSDNEDADSNINLSEPSSNTEITAFPNTEVKIEHDTGRIIVRSDSVNPEIEETKESEVVLDKILKKTDDEETTIILAGPSRKKQVSAKKTKEDKARAKQEAAKQEVPPVSSEPKNPSQVKRGQKGKLKKMKQK---------KDQDDEEREIRMMILKSSGKEKPQASADKVVEKSESTKEY---------------------VKPEKSAAPKNPVELDDADEVPVGGDVDVLNSLTGQPHEGDELLFAIP-PYQALQNYKFKVKLTPGT-----------------GKRGKAAKLA.......................... 926
9 -7.550[R] KOG4227 WD40 repeat protein  ali follow..  6  623..DDLSSSPTSSPERSTSTLEIQPSRASPTSDIESVERKIYKAYKWLRYSYISYSNNKDGETSLVTGEADEGRAGTSHKDNPAPSSSKEACLNIAMAQRNQDLPPEGCSKDTFKEETPRTPSNGPGHEHSSHAWAEVPEGTSQDTGNSGSVEHPFETKKLNGKALSSRAEEPPSPPVPKASGSTLNSGSGNCPRTQSDDSEERSLETICANHNNGRLHPRPPHPHNNGELEVVAYSSPGHSDTDRDNS----SLTGTLLHKD----GSEMACETPNAGTREDPTDTPATDSSRAVHGHSGLKRQRELEDTDSENSSSEKKLKT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 942
10 -7.540[R] KOG4264 Nucleo-cytoplasmic protein MLN51  ali follow..  10  2.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ADRRRQRASQDTEDEESGASGSDSGGSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKG------EKPDTKSTVTGERQSGDGQESTEPVEN-----------------------------------KVGKKGPKH-----LDDDEDRKNPAY----IP--F-----FEHDLRGQTQEEWEHDKFREDEQAPKLIALYGYDIRSAHNPDDIKPRRIRKPRYGSPPQRDPN. 272
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;