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Query: [A] KOG2560 RNA splicing factor - Slu7p, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFSMGSAVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQPSLKHQKNWKIEPEPKKIWYDRGKKIYQAEQYRKGACINCGAMTHSSKACMDRPRKIGAKYTNMNIAADEKIESFELDYDGKRDRWNGYDTSTYRHVVDRYDAKEEARKKYLKEQQLKKLEEKNNNENGDDATSDGEEDLDDLRVDEAKVDESRQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKQINIHSCEAFDKGHDMHMQAAPSQAELLYKNFKVAKEKLKTQTKDTIMEKYGNAATEGEIPMELLLGQSERQIEYDRAGRIMKGQEVIIPKSKYEEDVHANNHTSVWGSWWKDHQWGYKCCQQTIRNSYCTGSAGIEAAEASIDLMKANIARKEASKESPKKVEEKKMATWGTDIPEDLELNEEALANALKKEDLSRREEKDERKRKYNVNYTNDVTSEEMEAYRMKRVHHEDPMRNFPGLast
1 -223.000[A] KOG2560 RNA splicing factor - Slu7p  ali  100  1MFSMGSAVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQPSLKHQKNWKIEPEPKKIWYDRGKKIYQAEQYRKGACINCGAMTHSSKACMDRPRKIGAKYTNMNIAADEKIESFELDYDGKRDRWNGYDTSTYRHVVDRYDAKEEARKKYLKEQQLKKLEEKNNNENGDDATSDGEEDLDDLRVDEAKVDESRQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKQINIHSCEAFDKGHDMHMQAAPSQAELLYKNFKVAKEKLKTQTKDTIMEKYGNAATEGEIPMELLLGQSERQIEYDRAGRIMKGQEVIIPKSKYEEDVHANNHTSVWGSWWKDHQWGYKCCQQTIRNSYCTGSAGIEAAEASIDLMKANIARKEASKESPKKVEEKKMATWGTDIPEDLELNEEALANALKKEDLSRREEKDERKRKYNVNYTNDVTSEEMEAYRMKRVHHEDPMRNFPG 538
2 -6.550[K] KOG2857 Predicted MYND Zn-finger protein/hormone receptor interactor  ali follow..  19...............................................................................................................................................................................................................................................................................................................................................................................................................................YKCCFKIHKVCNLINNAETPCAKPSDPSSTEEKPVVQCSCSGFVAASPAKEVPVKRPEEANDVVEKTQQKASASSSEIREALKDEPLQKLIYSIDSSSNPLQELD-----EAMGIEAFREFT. 151
3 -6.220[R] KOG4727 U1-like Zn-finger protein  ali follow..  15  83..............................................................................................................................................................................................................................................................................................................................................................................................................................GFYCCDCVVKDSFLDHINGKNHQRNIGMSMKTKKSTVADVRERFKLMKDKKEREKKEAQVEQLLEDVQEEEARMADFKKDKKTDNRKRKRDTRKDEEEDDDEDDSGL--------DPEIRAMMG 202
4 -6.060[S] KOG2673 Uncharacterized conserved protein, contains PSP domain  ali follow..  13  5.MDLTEDDFRNVSGQFSGQASIVEVGDA-VETVKVDDQEQVLETYFPAL-STTPLYNRGFTIGLDSGSNNVEGGLEIID--------------DPPRCFNCGAYSHSIREC--RPFNARRQHKRKRNQTPGSRLPSRYYQSLQRGKYDGLKPGSLDAETRK......................................................................................................................................................................................................................................................................................................................................................................................... 192
5 -5.830[R] KOG4264 Nucleo-cytoplasmic protein MLN51  ali follow..  16  138..TKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPYIPR---KGLFF--------EHDLRGQTQEEEVRPKGRQRKLWKDEGRW-----------EHDKFR--QAPKSR---------------QELIALY--------GYD-------IRSAHNPDDIKPRRIRKP.......................................................................................................................................................................................................................................................................................................................................................................... 261
6 -5.710[R] KOG4602 Nanos and related proteins  ali follow..  24  237...................KHNGESRHVYSSHQLKTPDGVVVCPILRHYV-----------------------------------------------CPVCGATAHTLKYC---PLNGGQQ---------SLYRRSGRNSAGRR.......................................................................................................................................................................................................................................................................................................................................................................................................... 305
7 -5.630[K] KOG2845 Activating signal cointegrator 1  ali follow..  38..............................................................................................................................................................................................................................................SIESAEEIREYVTDL------------------LQGNEGKKGQFIEELITKWQKNDQELISDP----LQQCFKKDEILDGQKSGDHLKRGRKKGRNRQEVPAFTEPDTTAEVKTPFDLAKAQENSNSVKKKTKFVNLYTRERQDRLAVALPGRHPCDCLGQKHKLI-GRIVCEQEGSGPCCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGVENSGKVDISTKDLLPHQELRIKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKLERETLQKREEE.......... 312
8 -5.630[OU] COG5082 Arginine methyltransferase-interacting protein, contains RING Zn-finger  ali follow..  27  59.............................................................................................AAPKCNNCSQRGHLKKDCPHII....................................................................................................................................................................................................................................................................................................................................................................................................................................... 80
9 -5.610[O] KOG4400 E3 ubiquitin ligase interacting with arginine methyltransferase  ali follow..  22  149.............................................................................................KGGCCKFCSSVHHLAKDCDQVNKDDVS.................................................................................................................................................................................................................................................................................................................................................................................................................................. 175
10 -5.390[S] COG5291 Predicted membrane protein  ali follow..  253............................................................................................................................................................................................................................................................................................................................................................................................................................................SLTDMADTKSSTENSAVTEESQCCAESFKDSSVVSSQKSMAVSTVVGSSTEAKNNYLDFTEALCDKEVVAEQNPESQSNEEWDEKWGDSDNES................. 345

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.