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Query: [U] KOG2580 Mitochondrial import inner membrane translocase, subunit TIM44, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKATSCRPIPFINFRIVRYFYRPRRLNKYYDIYRIAALVRDRACLFTCQQASQNLQQQQPRFYSAPGRRAGFFSQFFDNMKAEMDKNKEIKDNIRKFREEAQKLEESDALKSARQKFNIVESEAQKSSSMLKEQLGAIKERVGDVLEDASKSHLAKKVTEELSKKARGVSDTISDTSGKLGQTSAFQAISNTTTTIKKEMDSASIENRVYRAPAKLRKRVQLVMSDSDRVVEPNTEATGMELHKDSKFYESWENFKNNNTYVNKVLDWKVKYDESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLMELSANSSEQFVLast
1 -123.000[U] KOG2580 Mitochondrial import inner membrane translocase, subunit TIM44  ali  100  1MKATSCRPIPFINFRIVRYFYRPRRLNKYYDIYRIAALVRDRACLFTCQQASQNLQQQQPRFYSAPGRRAGFFSQFFDNMKAEMDKNKEIKDNIRKFREEAQKLEESDALKSARQKFNIVESEAQKSSSMLKEQLGAIKERVGDVLEDASKSHLAKKVTEELSKKARGVSDTISDTSGKLGQTSAFQAISNTTTTIKKEMDSASIENRVYRAPAKLRKRVQLVMSDSDRVVEPNTEATGMELHKDSKFYESWENFKNNNTYVNKVLDWKVKYDESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLMELSANSSEQFV 459
2 -53.500[S] COG4395 Uncharacterized protein conserved in bacteria  ali follow..  18  69..............................................................................................................................................................................................................................................................................................ESRYAAIEIVAKAGTPLNAQLRAMTDADPNFNPAEFLNGA-KMAYEMIVMAFADGDRKTLKGLLSREVYEGFEAAIAEREAKGEVVKSTFVGIDKADIVHAEIKDAEENITVRIISQLISATYDKQGKLVDGDADSVAEVNDLWTFARDIRSRDPN--WKLIATESEN..... 233
3 -32.800[J] KOG4599 Putative mitochondrial/chloroplast ribosomal protein L45  ali follow..  12  113...................................................KAKPQTFAARFQTPDGSEVSVVIRPSNQLKKDISDLGSLKAAARLFVPGAATIYSARTIKVKEEQVASNYTPIGSGINVLDRRISKGLICLK-LEEKAHGDTVLRDVANLFRLKPFRLNSRISTDKNPSMEFEINETGSRESSSLPNGNEFSLIQIGDDFRFGCWRSYHSSLCHVPEAHGKSAYSRLYEGHSVNTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQLQKTGAVRVSMVSPGFVYEPYALRFQLRSAYAIAKLRKTGYSKNTFYIEALE-LYKQINIQMANGEKKTIRKNVTERMYSALKNEIKQREAMWDGVKIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKGNVAAGDKNKEVLVRDIWVFEKSLFHTGAY--WRLCGRIK....... 548
4 -8.480[S] KOG4744 Uncharacterized conserved protein  ali follow..  12  137.........................................................................NEGAYKAADKAEDTKEAKDYAEDTMDNAKE-KARHAKEKVKEYGEDTKEKAEGFKETVKGKAEELGEKTKETVKGAWEKNAAQTVTEAVVGPEEDAEKARADMNKGVEDHKKAEKDQKEDDFITFN.................................................................................................................................................................................................................................................................... 266
5 -8.250[S] COG2733 Predicted membrane protein  ali follow..  78.................................................................PRNKDRIGENLGQFVQKKFLDTQSLVALIRRPALLIGNWFSQPENARRVGQHLLQIMSGFLELTDDARIQRLLKRAVHRAIDKVDLSGTSALMLESMTKNDRHLDTLIAQLIALLQRDKSRKFIAQQIVRWLESEHPLKAKILPTEWLGEHSAELVSDAVNSLLDDISRDRAHQIRHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFLSELWGDLREWLKADINSEDSR--KERIARAGQWFGETLIADDALRASLNGHLEQAAHRVAPEFSAFLTRHISDTVKSWDARDMSRQIELNIGKDLQFIRVNGTLV........................................................................... 400
6 -7.250[S] KOG3990 Uncharacterized conserved protein  ali follow..  225................................................................................SDHVVAITYLKERIASLEKRLNQ-KDKELLEK-DKQLTELKGKNFEKENDMRNRLKEVERLHDMKVDNLNRKASVLKELAVLKKSSNKKTAAISKAEKEIIKRENLSPKEEILATTGPEKPTKASSEPADLDKDEKSRDRDEERSEQGDRASVRSRSASSSPTPSSN.................................................................................................................................................................................................................... 390
7 -7.250[S] COG4399 Uncharacterized protein conserved in bacteria  ali follow..  11  51.................................................................PRRRDELAKQMGLMVVNHLLTPEGIKKRLV----------SDAAKTQALRVGEQLIQKLSLSEVTVKEALEKAGMKRPEKAADAWISSWTDDKLHELFRQYQSLKELVPIEVQEKLEEKIPMISGYILSRSVRYFESDEGKIRLGNMIDDFLKERGMLGSMVQLFLGNSSLADRVLPELLKFLRNEETNKLLSDLLKNEWGKLREY---------------------TFNEADEKWNAKALIFSLKRVLQAFSTAPFFNNTIGTLTVRYESELTQQMLPALLDKLLEGISSNLESVLKRLRLEEIVKE----QVDQFPV------ERLEEMVLSISKKEFKMIT--LGGLL-G......................................... 363
8 -6.960[R] COG4980 Gas vesicle protein  ali follow..  28....................................................................................SSGKQLREKMKTNYDSF-----EETIKRLKSDGLALKDQLIKAAKESTDVIKDVGGELQTSIKKWQEE--IKPHQQDLQKEIADIEEKIRQLEKTLQN..................................................................................................................................................................................................................................................................................... 118
9 -6.610[U] KOG0862 Synaptobrevin/VAMP-like protein SEC22  ali follow..  86..........................................................................AYLEDLHSEFDE--QHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNL--GSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLA............................................................................................................................................................................................................................................................................. 197
10 -6.600[U] KOG0946 ER-Golgi vesicle-tethering protein p115  ali follow..  643...............................................................KTLEQHDNIVTHYKNMIREQDLQLEELRQQVSTLKCQNEQLQTATQQVSQIQQHKDQYNLLKIQLGKDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMK--SSQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSVEVQGETETIIATKTTDVEGRLSALLQETKELKNEIKALSEERTAIKEQLDSSNSTIAILQT-----EKDKLELEITD----------SKKEQDDLLVLLADQKILSLKNKLKDLGHP........................................................................................... 933

FFAS is supported by the NIH grant R01-GM087218-01
1 4 3 0 4 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.