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Query: [C] KOG2658 NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAPVRGILGLQRAVSIWKESNRLTPALRSFSTQAASTSTTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICEDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRERAERELLQAAALast
1 -125.000[C] KOG2658 NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit  ali  100  1MAPVRGILGLQRAVSIWKESNRLTPALRSFSTQAASTSTTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICEDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRERAERELLQAAA 486
2 -108.000[C] COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit  ali follow..  38  4...............................................NSGTTKEIIRTPEMHPLTWRLRDDKQPWLDEYRSKNGYAGAEKALGMAPTDVVNVVKDAGLKGRGGAGFSTGLKWSLMPKDDSMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIIEHGVEWYQGIGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGLKFKAWQPGGAGTDFL--TADHLDLPMDFENIAKAGSRLGTALAMAVDHEIGMVSLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIAVKAYESGMTSGN 445
3 -47.900[C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC  ali follow..  17  113............................................................................DGEDRWREQQPWADYRQRDKMALLDRIHQAGIAGLGGAGFPTASKLQ----GGLNGIITLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQRALRGQD----------------DIHLRVVPTKYPSGGAKQLTKILTGKEVPFGKHSS--------SIGVLMQNVGTVVAIKRAVIDDEPLI----------ERVVTLTGDLSSPGNFWARIGTPVLYLLKLAGFKPQNPPM---VIMGGPLMGFTLPS---LDVPIV----------KISNCILAPAET--------EMGLSEPEQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEKARNHNLFDCIE--GACAYVCPSNIPLVQYYRQEKAEIRALDQESARAAEAKA.. 458
4 -13.900[C] COG1726 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA  ali follow..  11  108........................................................................................EQLNQLTSEQVRQNLQASGLWTALRTRPFSKVP------AVDATPVSIFVNAMDTNPLCADPQVIVQQSAQAFEAGLTVLSRLHEGKVYLCKAANASIPSPSIAN------------------------LDVKEFAGPHPAGLSGTHIHFIDPVS----------------TKFVWYINYQDVIAVGKLFTTG----------ELDVSRVVSLAGPVKNPRLVRTVLGANLSQLTANISGSVLSGAKAAGPVLGRYALQVSVLEEGREKEFLGWIMPGANKYSLSRTVLGHFSKKLFNFTTALNGGE-----PIGAYERVMPLDIIPTLLLRDLAAGDTDSAQALGCLELDE--EDLALCTFVCPGKNEYGPLLRQALDKIEKE.............. 445
5 -7.560[C] COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB  ali follow..  12  1..................................................................................................................................................................................................................................................................................................................................................................MNAIWIAVAAVXLLGAILGYASRRFAVEDDPVVEKIDEILPQSQCGQCGYCAPGGEAVMLKIAELLNVEPQPLDGEAQELTPARMVAVIDENNCGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDP 156
6 -6.690[UR] KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins  ali follow..  12  19.............................................................................................................................................................................................SSVIPIVNKLQDI-----AQLGSQSTIALPQVAVVGSQSSGK-SSVLEALVGRDFLPRGN--RPLRLQLVQTKP--RRIYDFSEIRREIEAETNRVSGENKGVSDIPIGLKIFSPVDLPGITKVPVGDQIRTMILTY---IKEPSCLILAVSGHRTIGVITKLDIMDRGTDARNHLLGKTIPLRLGYVGVILMNRSIKDALVAEEKFFRSRPVYSGLTDRLGVPQLAKKLNQVLVQHIKALLPSLKSRINNALFAKEYESYGDITESRLLSFITKYCEAYSSTLEGK.......... 367
7 -5.790[M] COG1596 Periplasmic protein involved in polysaccharide export  ali follow..  18  33...............................................................................................................................................................................................................................GTNYKVATGDVLTISV----GDPGLTGLFPVSDGTIGYP-LLGNVNTVNEIGERISRDLASHVA--AVAVKEYAPIFVVGDVQKPGKYEFRPGMIVLELFALGGGLREPNAQRDTSGIQLIAAQQEYEDMSMQLLSQD............................................................................................................................. 173
8 -5.410[R] COG0699 Predicted GTPases (dynamin-related)  ali follow..  9  233....................................................................................................................................................................................KEDRMMLFTKKMIEIRNILQ-------DIQDNNSAVTLPSIVVIGSQSSGK-SSVLEAIVGHEFLPKGS--RPIELTLVHSADTAGKITDFSKIQHILTDLN---MAVPSSQGVDDNPIRLT--IDLPGYIQIHSE-KISKLCEKY---IREPNIILAVCAAGLRTIGVVTKMDLVPPSKAISILHNNNYPLHYGYIGVISRINLTDLVSTQENSYFSTHQ-DARIGNYLGIQSLRKCLINVLEYTMSKNLQHTADSIRTELEEYQYKVQYNDRVLTADSYIAEGLDIFKAAFKE........... 576
9 -5.410[MG] COG1086 Predicted nucleoside-diphosphate sugar epimerases  ali follow..  12  254...................................................................................................VQDLDIADLLGRAPVEPDLALLQKNITE------KSVMVTGAGGSIGSELCRQILAQKPKTLV--------LFELNEYNLYIDQELQAIKQNLKLNTKIVAALGSVQRKKLMQAHQVETVYHAAAYKHVPLVEDNVIEGIR-------------------------NNV-TLACANAAIEAGVKNFTLISTDKAVRTNIMGASKRMAELVLQALADKNSTTIFTMVRFGNVLGSSGSKQIRAGGPVTVTHPDIIRYFMLIPEAAQLVIQAGAMSHNGVLDMGEPVKIVDLAKRMIHLMGMKE--KFTGLRPGEKLYEELLQKIMTACEEKLSWDAMEDLLTELDVCCHNFDVECIKRILLDAPTGYSPQ.................. 620
10 -4.960[R] COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats  ali follow..  11  319.....................................................................................EKIEKLMDYDISSRAKQVEIMYLLEQLRASMSEDERLKFENEYYNRWENFTKKHAREIEKTHIKFSLQLEAEGMNSVPGRLLNRFSLDEYNGYLRVATTVDWDENDLYVLDEKLEVVGKIDERIYAVRF-------DGDVGFI-----VTFRQTD---------PFFVLDLSNPENPKIVGELKIPGFSSYLHRIDENTVLGVGREEG-NVKLFDISDLTSPKEKNRYILQEYWSEVLSNHHAFLLDSQHGIFFLP--GQNGYIFSYKDGLKLIKAVKGNAVRAIYIDDYLYIIGPEEISVYDE................................................................................................. 607
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;