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Query: [S] KOG2690 Uncharacterized conserved protein, contains BSD domain, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNFFKSVFTEDLDPPETESESDSPKHSEEHEHPEQEHPEQSESNDDGGWSFGGLMKTLATRSESVIETYRRDLEEFGTGLKKEIEVAQGSLGTVGHAIDELGNTVLKGTAEIIAQGKEAILAAGNESDSSDNNSSQSFGRRDSFSSKPYSRFDAQIRAVQGDLNTYCEEPEDSDDYKKWESAFSLDGKAEEMEKLLEENGDMKGVYKRVVPSMVDHETFWFRYFYRVNKLKQAEDLRANLVKRAISLDDEEELSWDIDDEEESSEKVVEATKDVSRLKLEGNDGMGGGDVSETVKDEVESTYSVAKVSTQDEVTSADSVTEVSNVGLKTDKDSEEKKETDSEEVPEEKSFVDAAPPASDEAPIQDSVKPTSDEAPIQDSVKPKSDEAAPSQDSAKPDVAASSSTQQPSEEDLGWDEIEDMSSIDGKETSRSGGSPNRAELRKRLSAAEEDEDLSWDIDEDDEEESSSSKALast
1 -80.400[S] KOG2690 Uncharacterized conserved protein, contains BSD domain  ali  100  1MNFFKSVFTEDLDPPETESESDSPKHSEEHEHPEQEHPEQSESNDDGGWSFGGLMKTLATRSESVIETYRRDLEEFGTGLKKEIEVAQGSLGTVGHAIDELGNTVLKGTAEIIAQGKEAILAAGNESDSSDNNSSQSFGRRDSFSSKPYSRFDAQIRAVQGDLNTYCEEPEDSDDYKKWESAFSLDGKAEEMEKLLEENGDMKGVYKRVVPSMVDHETFWFRYFYRVNKLKQAEDLRANLVKRAISLDDEEELSWDIDDEEESSEKVVEATKDVSRLKLEGNDGMGGGDVSETVKDEVESTYSVAKVSTQDEVTSADSVTEVSNVGLKTDKDSEEKKETDSEEVPEEKSFVDAAPPASDEAPIQDSVKPTSDEAPIQDSVKPKSDEAAPSQDSAKPDVAASSSTQQPSEEDLGWDEIEDMSSIDGKETSRSGGSPNRAELRKRLSAAEEDEDLSWDIDEDDEEESSSSKA 470
2 -14.500[R] KOG2295 C2H2 Zn-finger protein  ali follow..  8  169......................................................................................................................................................................ISDSEVMRKYTEYKTDF----KRQQLNEFFVAHKDEEWFKNKYHPEDSVKDVF------TIGSVKVDSSQADALIRVLDTCVIKLEGGTDEDLKVLDEKPKDPVVYERKAEQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDG 482
3 -11.900[K] KOG2478 Putative RNA polymerase II regulator  ali follow..  12  357......................................................................................................................................................................................................................................................................................................NEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD. 531
4 -11.600[S] KOG4610 Uncharacterized conserved protein  ali follow..  12  260...........................................................................................................................................................................................................DVWGIVLNVILQDAPF---LTFRLLIIFQYKIINYMNVFFTCKNSLVIILQLYRLYVVNAEFWKNRRESRMAKSRQFQSRRKVQDADQNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSSSSSSSDSS 523
5 -11.000[R] KOG4264 Nucleo-cytoplasmic protein MLN51  ali follow..  12  1....................................................................................................................................................................................................................................................MADRRRQRASQDTEDEESGASGSDSGGSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKN--EHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHD-REDEQAPKSRQE. 235
6 -9.710[KL] KOG2074 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB1  ali follow..  14  91.....................................................................................................................................................AEFELRFKLLRENSQFVESKVLTEDEF--WSTRVTFNLTSEIIFQIFAEKPAVRQAFINYVPKKMTEKDFWTKYF...................................................................................................................................................................................................................................................... 206
7 -9.600[K] KOG2393 Transcription initiation factor IIF, large subunit (RAP74)  ali follow..  10  150...............................................................................................................................................................................................................VAIP--AGS---WYNF-YKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALFGEVDNEKESGGTSGGGGRGRKKSSGGDEEEGNVSDRGDEDEEEEASRKSRLGLNRKSNDDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLDESDEDDDDDSDDEEETNYGTVTNSKQKEAAKEEPVDNAPAKPAPSGPPRGTPPAKP 411
8 -9.540[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  10  449......................................................................................................................................................................................................................................EEVMSRNRTVSSSAIARAVSDAAAGEYSSAIETLVTAISLIKQSKVAHDERSSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSRERERDRDRERERDGGRSVRPRKSPEPVVAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAGGSMEKPRGQSAWDIIDTDAHWIIKQQTTSIPAPPSS 693
9 -9.140[A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain  ali follow..  8  7.................................................................................................................................................................................................................................KVNELREELQRRTELAERLQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDD................................................... 208
10 -8.560[R] KOG4334 Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain  ali follow..  14  2................................................................................................................................................................................................................................................................................................................................EQESGGKKSNEQLLSEREAIMRQLAMLGSGPEDLDVDDEEEDEEEEVEKMEEGVEETMENASVVKETTPVKDENIVEDSNSSEELFPYLDSPPEDKIQEISANDTEIDQIDSPIRFEGVKNPAQKMDVDGEEGTSTDARPVSGSSGSSVG 151
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;