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Query: [O] KOG2754 Oligosaccharyltransferase, beta subunit, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGYFRCAGAGSFGRRRKMEPSTAARAWALFWLLLPLLGAVCASGPRTLVLLDNLNVRETHSLFFRSLKDRGFELTFKTADDPSLSLIKYGEFLYDNLIIFSPSVEDFGGNINVETISAFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDISDLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFFPDKPITQYPHAVGKNTLLIAGLQARNNARVIFSGSLDFFSDSFFNSAVQKAAPGSQRYSQTGNYELAVALSRWVFKEEGVLRVGPVSHHRVGETAPPNAYTVTDLVEYSIVIQQLSNGKWVPFDGDDIQLEFVRIDPFVRTFLKKKGGKYSVQFKLPDVYGVFQFKVDYNRLGYTHLYSSTQVSVRPLQHTQYERFIPSAYPYYASAFSMMLGLFIFSIVFLHMKEKEKSDLast
1 -132.000[O] KOG2754 Oligosaccharyltransferase, beta subunit  ali  100  1MGYFRCAGAGSFGRRRKMEPSTAARAWALFWLLLPLLGAVCASGPRTLVLLDNLNVRETHSLFFRSLKDRGFELTFKTADDPSLSLIKYGEFLYDNLIIFSPSVEDFGGNINVETISAFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDISDLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFFPDKPITQYPHAVGKNTLLIAGLQARNNARVIFSGSLDFFSDSFFNSAVQKAAPGSQRYSQTGNYELAVALSRWVFKEEGVLRVGPVSHHRVGETAPPNAYTVTDLVEYSIVIQQLSNGKWVPFDGDDIQLEFVRIDPFVRTFLKKKGGKYSVQFKLPDVYGVFQFKVDYNRLGYTHLYSSTQVSVRPLQHTQYERFIPSAYPYYASAFSMMLGLFIFSIVFLHMKEKEKSD 456
2 -29.000[N] COG3225 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component  ali follow..  11  176KGDVFIEYGDKKQLVQNLLSFQQRED-LSEIQLTNAIAKAQRQEIPQVYLVQGHGELPGISTAVTALENLGVTV-------QPLNVVTDGGIPEDADAVVIAGPTRKFLAPEIATLKQYTDQGGNLLVMVSPEADAGLEDLLEPWGVSFDPRLVIDLSGAGGVFGLDPTVPIFNRYGNHPITQKL----QGAIAIFPLVRPVATKEQPHIATTLVEASDLMYATQLISEDLQPNPEDQAQTAQQNGDPELPPAKMVVVGSAAFATNAWFN--------------EAVNGDIFLNSVQWLANVDQPLNVRAKDPTDRRINLGVRRAT.................................................................................................................................. 569
3 -11.500[G] COG4813 Trehalose utilization protein  ali follow..  12  1........................................MTMTINTVVWGENIHEHINHNTIADALNQNPINATTATLQEPEHGLSQDRLDKTDVLVWWGHKDHGAVQDEIVERVAKRVWEGMGLIVLHSGHFSKPFKRLMGTPC-------------ALKWREAGERERLWTINPRHPIAAGLPEHFELENEEMYG---------------------EQFSVPEPLETVFISWFQGGEVFRSGLTWRRGAGNIFYFRPGHETYPTYHDANVQ---------------KVISNSVKWAYNPAGALKSIHDAPNVPVDKALEP..................................................................................................................................... 246
4 -10.200[S] COG5426 Uncharacterized membrane protein  ali follow..  8  2...................................KILFIGESWHIHMIHSKGFDSEEGADYLLSCLRQGNIDVDYMPAHIVQTRFPQTAEALACYDAIVISDYNMDIIPDALQLIADYVAEGGGLLMIGGYLSFTGIEAKANYKNTVLAE--------------------------------PVDMLDVDDRVELPQGCKAVNTAVEHVITQPFSEWPPLLGYNKLIAKENSQVLAEINGDPLLVMGTYHKGKVCCFAS-----------DCSPHWGSPQFLQWEHYATFWCNVLHTIKK........................................................................................................................................................... 245
5 -10.100[S] COG4878 Uncharacterized protein conserved in bacteria  ali follow..  8  18...AVFFQILRLNFVMNFFKNDKGITNKISYTSAKIPSNTEKEKFLILFDKNEQNSSEIKNNIEQMLKYMKKTAVVEEKNNVQTVDPSYR-------AVILTFEDI-DDFKSLSSVMNYAQNGGNVLFAERPVMGDALSSISNEIGIK-------TVSDMGESDGMTLLSNVLIKGNGVNVSKDIVSDYSLKVTLNNNSKLLGISDNK---IPMMWQTKFGSGNIMVFNGTILAKKDQRGIITGAISLLVPNYIYPIIDAKLTYIDDFPAPIPSGYNSSIYKEYGITTADFYRKVW-WGSRLYNLKYTGSIIEDYNNNTTPPFSTKTSNANDFILYGSELVKSGG------ELGIHGYNHQSLAPKDYIKEPLGYKPWASEENMVKAVEEVSRYSASLFKNYAFKVYVPPSNVLSPDGKKAILKAMPNLKTISSIYTD.................. 432
6 -8.910[S] COG3828 Uncharacterized protein conserved in bacteria  ali follow..  8  3............................................KKALIAWGGHTPERSANVIRALLQRNGFDVTLGQ---GTAMFADPQLSSFD--LIVPAITMSTIEKAELQNLTAAVREGTGLGGFTMGDSFRNEPDYQFMTGGQWVAH------------GNIIDYRVAITQPDDPITKGVGDFAYRSEQYY------MHVDPSNEVLATTTFTDAHFPGIDGVVMP------------VVWKRRYGAGKVFYLGTADEFAVPEM-------------------ALIVERGLLWAAR........................................................................................................................................................... 214
7 -8.390[S] COG4285 Uncharacterized conserved protein  ali follow..  10  2.............................................NVLIYNGNGASKICLLRTFQSLLPPLYAMRFVDAST-----LEKEPWPASTALLVMPG-CSSFNETIYRKITDFVKRGGAYLGLCAGGAVVDFRMPDSDLNVVGKRKLQFFPGTCAGPTFPGFTYDSEDGARRASIIVDGMQSSPVHTHIYFNGGGSFLETENYSNVKVVARYQETDFEKS----------------AAIIYVKVGKGNVVLTG-----------EFSAEGSPILDKRDEKTRLELLSYILKLLGLKVPKDTSKCGQPTLTDQYLFPNNVETKRFIEKALT........................................................................................................................ 275
8 -5.960[R] COG1832 Predicted CoA-binding protein  ali follow..  11  7..................................AEIKEILQRSKRIAVVGLSDRPDRTSHMVSKAMQDAGYEIIPVNPTIDEALVSSLKEIDGPIDIVNVFRRSEQLPG----VAEEFLETDAPVFWAQQGLVNEEAYQMLKEKGRTVIMDLCIKVAHAV....................................................................................................................................................................................................................................................................................................... 133
9 -5.700[H] KOG1536 Biotin holocarboxylase synthetase/biotin-protein ligase  ali follow..  10  2.............................................NVLVYNGPGTTPGSVKHAVESLRDPYYAVSTVNVKV-----LQTEPWMSKTSAVVFPGGAQACQPIISRLKHFVSKQGGVFIGFCAGGYFGTSRVEFAQGDPTMEVSGSRDLRFFPGTSRGPAYNGFQYNSEAGARAVKLNLPDGSQFSTYFNGGAVFVDADKFDNVEILATYAEHPDVPSSDSGKGQSENP-----AAVVLCTVGRGKVLLTGPHPEFNVRFMRKSTDKHFLETVVENLKAQEIMRLKFMRTVLTKTGL....................................................................................................................................................... 259
10 -5.510[S] KOG4396 Predicted membrane-anchored protein  ali follow..  9  5................HLQQPSFLLASLKADSINKPFAQQCQDLVKVIEDFPAKELHTIFPWLVESIVLVGWNLRCL---------------------------QGRVNPVEYSIVMEFLDPGGPMMKLVYKLQAEDVSYLPGPVKASIQECILPDSPLYHNKVQFTPTGGLGLNLALNPFEYYIFFFALSLITQKPLPVSLHVRTSDCAYFILVDRYLSWFLPTEGSVPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPASHEIWRS---ETLLQVF-WLHHYSLEMYQKMQSPHAKESFTPTEEHVVRLLLKHEQASPSAHSHATSPLEEFKRAAVPRFVQQKLYLFLQHCFGHWDASFRA-----VLEMWLSYLQP-WRYAPDKQAPGSDSQPSEKWAPFVQENLLMYTKLFVGFLNLMVFRVAKVFAQPN.... 448
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;