Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: [AD] KOG2809 Telomerase elongation inhibitor/RNA maturation protein PINX1, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .
# Score Template Links and tools%idFirst MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEHGATDHIKVQVKNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKISKNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQSKKTPEGDASPSTPEENETTTTSAFTIQEYFAKRMAALKNKPQVPVPGSDISETQVERKRGKKINKEATGKDVESYLQPKAKRHTEGKPERAEAQERVAKKKSAPAEEQLRGPCWDQSSKASAQDAGDHVQPPEGRDFTLKPKKRRGKKKLQKPVEIAEDATLEETLVKKKKKKDSKLast
1 -65.100[AD] KOG2809 Telomerase elongation inhibitor/RNA maturation protein PINX1  ali  100  1MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEHGATDHIKVQVKNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKISKNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQSKKTPEGDASPSTPEENETTTTSAFTIQEYFAKRMAALKNKPQVPVPGSDISETQVERKRGKKINKEATGKDVESYLQPKAKRHTEGKPERAEAQERVAKKKSAPAEEQLRGPCWDQSSKASAQDAGDHVQPPEGRDFTLKPKKRRGKKKLQKPVEIAEDATLEETLVKKKKKKDSK 328
2 -23.100[A] KOG2184 Tuftelin-interacting protein TIP39, contains G-patch domain  ali follow..  10  128....SQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIEAKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQSQQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMTEVLDHEERV.................................................................................. 369
3 -22.400[R] KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains  ali follow..  34  853........................DESNIGNRLLKSMGWKEGQGVGKHAQGIVNPIEAERFVQGAGLGAAGSK............................................................................................................................................................................................................................................................... 901
4 -19.100[A] KOG2185 Predicted RNA-processing protein, contains G-patch domain  ali follow..  28  295....................KWENHTRGIASKMMASMGYREGMGLGVSGQGILNPILVKVLPAKRSLDY................................................................................................................................................................................................................................................................... 343
5 -15.100[A] KOG1994 Predicted RNA binding protein, contains G-patch and Zn-finger domains  ali follow..  33  72........................SHESKGFALMAKMGFKPGMTLGKQREDITEPIGVDIKANRKGLGHEVE................................................................................................................................................................................................................................................................ 122
6 -11.200[R] KOG2295 C2H2 Zn-finger protein  ali follow..  9  176...................RKYTEYKTDFKRQQLNEF-WFKNK---EQRGFLQRRTDVFMELLENGVKVDSSQADA----IRVLDTCVIKLEGGTDEDLKVLDEKPKDPVVYERKAEQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDL 500
7 -10.300[S] KOG4610 Uncharacterized conserved protein  ali follow..  7  299.........................................................................................................KNSLVIILQLYRLYVVNAEFWKNRRESRMAKSRQFQSRRKVQDADQNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSSSSSSSD 521
8 -9.780[R] KOG4368 Predicted RNA binding protein, contains SWAP, RPR and G-patch domains  ali follow..  29  808........................GEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKVRDKWDQKGVGVA----------DDPYENYRRNKSYSFIARMKARDECK.............................................................................................................................................................................................................................. 884
9 -8.340[NU] COG5268 Type IV secretory pathway, TrbD component  ali follow..  21  1..MLKPPRSKQEKLHDPPAFALPRQPGR-GQRRNCRQ--PHGRS-GRPCIGLLDAVGTAARKDGRGPGLQDHGRHHHHRHDAGLRRQFGRLQTAHPDR...................................................................................................................................................................................................................................... 97
10 -8.320[R] KOG2384 Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains  ali follow..  16  239........................SAKNRGLQLMVKQGWDQEHGLGPSQSGRLYPVKTVLRKQRTGLGIEQQSARVSHFGAFDLNAVRRRDPIYQPRRTRSDMQREKVREWKRERYLRRV................................................................................................................................................................................................................ 334
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.