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Query: [R] KOG2891 Surface glycoprotein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTHIQTIENVADCIPFYLPHSLYLKPLAKMQISVSLPTIKSGKSVSNLEIMDKLGAELKPDKFLLLKVSKSTVNTIRLEAELDERKRLRAAIQRLDGISLRISGFSESFRVRCAESKDDFPTRHDWDSYFRDARNMDEMKAGERPDTIHISHLPMRWFCPRHSEHEENVKPSENIFKRIFEKFGRVRMVDIPICDPYRKSMQADINGMRTFSFEQDVLFEGYVQFEEYSSFVRAMDEFRGNKLVRKFVDKTQAINICVSFDKQKHLSDSNIQRRERIRKKFIAKAKAEDEEREKLKKQQEEELDRERQKQEELKKAEAEKQREREERRKEKHMKKIQERGQVEISQKIRIEERKLMIAQRKLESIRTLEKLFERIQLKQRDKNRRVKQDDDKDIQRGRLVEKYKAATEKLVCDQRKIVQEIKSNTPLLGLLKSKSKKSAVPVDASSEDEAAASKRHKMGNGVTESAPPGDVNSALNPLNAVAAMAAGAVPGPGGYSAKVASEWMQSLSMFGYGLPGVFTGALYRPPAPFPVSSNYRGFAPRPRGRGRGRGIGIRGSRSGYDTYYNTKHDRYDDENENGYYHRSSRGRQSSSRRDHRGRHRSSRSNSRSRSHTPKEVILEADKLVASAEKIQRTIDQHTKDRMREEEREIKEKFRHPRTNSHSSNHMDAEPQGEASERRGSISSRSSRRNSLAVLast
1 -133.000[R] KOG2891 Surface glycoprotein  ali  100  1MTHIQTIENVADCIPFYLPHSLYLKPLAKMQISVSLPTIKSGKSVSNLEIMDKLGAELKPDKFLLLKVSKSTVNTIRLEAELDERKRLRAAIQRLDGISLRISGFSESFRVRCAESKDDFPTRHDWDSYFRDARNMDEMKAGERPDTIHISHLPMRWFCPRHSEHEENVKPSENIFKRIFEKFGRVRMVDIPICDPYRKSMQADINGMRTFSFEQDVLFEGYVQFEEYSSFVRAMDEFRGNKLVRKFVDKTQAINICVSFDKQKHLSDSNIQRRERIRKKFIAKAKAEDEEREKLKKQQEEELDRERQKQEELKKAEAEKQREREERRKEKHMKKIQERGQVEISQKIRIEERKLMIAQRKLESIRTLEKLFERIQLKQRDKNRRVKQDDDKDIQRGRLVEKYKAATEKLVCDQRKIVQEIKSNTPLLGLLKSKSKKSAVPVDASSEDEAAASKRHKMGNGVTESAPPGDVNSALNPLNAVAAMAAGAVPGPGGYSAKVASEWMQSLSMFGYGLPGVFTGALYRPPAPFPVSSNYRGFAPRPRGRGRGRGIGIRGSRSGYDTYYNTKHDRYDDENENGYYHRSSRGRQSSSRRDHRGRHRSSRSNSRSRSHTPKEVILEADKLVASAEKIQRTIDQHTKDRMREEEREIKEKFRHPRTNSHSSNHMDAEPQGEASERRGSISSRSSRRNSLAV 693
2 -13.200[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)  ali follow..  15  116...........................CRLFVG------NLPNEVKETELKELFSPH----DIAECYLSGKGFAFLRLD----TRAHAESAKEAIDGRIIH----GRQVRVRFA----------------------------VHGAAIRVKELSPTV--------------SNEMLYHAFSHFGDVERAVHIVDE------KGRPTGE------------GIVEFERKPNCNEAMAAIRDKVFLLTASPKPLICEVLEPRDEDDGLAERMIPRTPGLSKERELGPRFPTPNSFEYVYGMKWKELYVVEQKRRAQLDEELRESRRRLESDMELAYQDYQAQMLREDLQRRQQELERLEAARRERMRG....................................................................................................................................................................................................................................................................................................................................... 377
3 -12.500[A] KOG4207 Predicted splicing factor, SR protein superfamily  ali follow..  14  11..............................................................................................................................................DGMITLKVDNLTYR---------------SPDSLRRVFEKYGRVGDVYIPLEPHTKAPR-------------------AFVRFHDRSDAQDAEAAMDGAVL----DERELRVRMARYGRRDLPRSSQEEPRGRSWGGRYGRRSGSPRGRHRSQSRGPSYSRSRSRSHYGGSRYSLSIYRRSRYSRSPYRRSHYRGSRYGRSPYSRSYSRHHYSRSPYRESRYRRSPYIRSSRSRSPYRRSHSKSGSHSASPSTSKS....................................................................................................................................................................................................................................................................................................... 231
4 -12.100[R] KOG4454 RNA binding protein (RRM superfamily)  ali follow..  8  2......................................................................................................................................EIKPTPSPPEERTIYVANF--------------SEEVDEELLEELFIQAGPVVKVILRDVRDSNAK--------------------ALVEFEDELSVLFAIELMNGVRL----FNQELQVKPRNGTNQEELYKRKKGEIEERVRSVAAPDRDGRRDSYRDDRNRNRNGNNRDSWQQQQPPRHHRQYDPLPPPPPPPLMGGSGGHWRSGGERGPPQYSTPQMLPHQHFVNQMMQQQINRSAPPYNGRHQNSTPHRHHDRHGYDRSSSRHHRNDDRRRSAHFLDIRKFQAPPTSWAFGNFQCFFWNLFSKITYLQEV.................................................................................................................................................................................................................................................... 279
5 -11.700[A] KOG2217 U4/U6.U5 snRNP associated protein  ali follow..  9  2....................................................................................................................................................................................................................................................................GSSSSGKKHKKDKKNRHRSRSSERPRRVTEDEDVTLDLTDDSSSRHRHHKHKKHKEHRHKHHKQKERERANEVISLEESDSDSSDCVEVPVQAQVQAQAKLRDARESSNRDKERDSGRDRELLRERERERDRERERDRDREKEREREREKERLREREEREREREKERIREREKERLRERERERERERVRELTAPPPPQISKHAEYESRREREIERERDARKRSG................................................................................................................................................................................................................. 225
6 -11.500[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)  ali follow..  12  2.................................................................................................................................................SRVYVGNLDPR---------------TERELEDEFRSFGVIRSVWVARRPP------------------------AFLDFEDSRDARDAIREVDGKNG----WRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPYRARDEV......................................................................................................................................................................................................................................................................................................................................... 180
7 -11.300[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  10  477.................................................................................................................................................................................................................................SAIETLVTAISLIKQSKVAHDERCKILISSLQ-GIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSRERERDRDRERERDGGRSVRPRKSPEPVVAEAAEAPSSKRYYEDRERYRSSDRERRDRDR-DRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAGGSMEKPRGQSAWDIIDTDAHWIIKQQTTSIPAPPSSQQN.......................................................................................................................................................................................................................................................... 696
8 -11.200[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B  ali follow..  13  8.........................PNQSIYIQ------NLNERIKKEELKRSLYCLFSQ-RILDVVALKTPKLWVTFS----EVTAAGHAVRQMQNFPFY----DKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRNILFIQNLP--------------HETTSMMLQLLFEQYPGFKEIRMIDAKP------------------------AFVEYEDDVQASIAMQPLQGFKITPQN-------PMVISFAKK.............................................................................................................................................................................................................................................................................................................................................................................................................................................. 232
9 -11.100[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins  ali follow..  11  85...............................................................................................................................................................................LFEELGKFGEIESLNI-------DNLADHMIGN------------VYVQFKEEDQAAAALQALQGRFY----SGRPIIADFSPVTDFREATCRQYEENNNRGGYCNFMHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKEEGGA............................................................................................................................................................................................................................................................................................. 296
10 -11.000[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)  ali follow..  14  2....................................................................................................................................NKRNHIRLPPEVNRLLYVRNLPYK---------------TSDEMYDIFGKFGAIRQIRVGNTPETR----------------------AFVVYEDIFDAKNACDHLSGFNVCNR--------YLVVLYYQSNKAFKRVDMDKKQEELNNIKAKYNLKTPEA................................................................................................................................................................................................................................................................................................................................................................................................................ 120
11 -10.700[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)  ali follow..  10  37..................................................................................................................................................WIFLGGLPYE---------------TEGDIICVFSQYGEIVNINLVRDKKTGKSK-------------------CFLCYEDQRSTILAVDNFNGIKIKGR--------TIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTPSPSLSESSEDEKPTKKHKKDKKEKKKKKKEKEKADREVQAEQPSSSSPRRKTVKEKDDTGPKKHSSKNSERAQKSEPREGQKLPKSRTAYSGGAEDLERELKKEKPKHEHKSSSRREAREEKTRIRDRGRLQMHILAGIMGVLKGVVIEVEVGAEINPIGIKGPDAPGRGVLRIPVTVGVTEDFSCTVD...................................................................................................................................................................................................................... 330
12 -10.600[R] KOG2135 Proteins containing the RNA recognition motif  ali follow..  10  367..................................................................................................................................................TLQVAKIP-------------PEMNTIAKLNEHFATFGTVDNIQVRYNGEIDS---------------------ALVTYASKFDAGKAYTPVLNNRF------------IKVFWHNPGGEGSENATGKPSSPTSPPKPVEKPKIATVQESKFVSVAAQNYRKQIQDAKERLTKEKSILSTLVQAQNQHNIILDKWMVKQKELLIKARTSTDETDKKNATKLVKHLHKKIKACKEEVDGILLKISEKSMVVDEIAAQIEELKNP............................................................................................................................................................................................................................................................................................ 586
13 -10.500[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)  ali follow..  18  97..................................................................................................................................SQTQSSENSESKSTPKRLHVSNIPFR---------------RDPDLRQMFGQFGKILDVEIIFNE-------RGSKGF------------GFVTFENSADADRAREKLHGTVV----EGR----KIEVNNATARVMTNKKMVTPYANG............................................................................................................................................................................................................................................................................................................................................................................................................................... 203
14 -10.500[S] KOG4610 Uncharacterized conserved protein  ali follow..  9  263.......................................................................................................................................................................................................................GIVLNVILQFLTFRLLIIFQYKIINYMNVFFTCKNSLVIILQLYRLYVVNAEFWKNRRESRMAKSRQFQSRRKVQDADQNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSSSSSSSDSS............................................................................................................................................................................................................................ 523
15 -10.400[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)  ali follow..  9  4...................................................................................................................................................VYIGRLPNR---------------SDRDVEHFFRGYGKLSDVIMKN---------------------------GFVDFQDQRDADDAVHDLNGKELCGE--------RVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDD-----LRDAMNKLQGEDLNGRKLKCTDETRDRSRSRSPRRRSRSRSPTRSRSPPARRRSPGSDRSDRKSRSASPKKRSDKRARSESKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSPRSGSASP........................................................................................................................................................................................................................ 281
16 -10.200[A] KOG0131 Splicing factor 3b, subunit 4  ali follow..  18  26....................TVYVGGL--------------DAQLSEELLWELFVQA----PVVNVYVPKDRVTFIEYR----SEEDADYAIKVLNMIKLH----GKPIRVNKASQDK---------------------KSLDVGANLFIGNLD--------------PDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRG-----------------GFISYDSFEASDAAIESMTGQYLSNRQ--------ITVSYAYKKDTKGERHGTP................................................................................................................................................................................................................................................................................................................................................................................................................................... 202
17 -10.100[R] KOG2140 Uncharacterized conserved protein  ali follow..  7  671.....................................................................................................................................................................................................................................................SSSASSSSESDSSDSDSDSSDSSSESSSEESDSSSISSHSSASANDVRKKGHGKTRSKEVDKLIRNQQTNDRKQKERRQEHGHQETRTERERRSEKHRDQNSSGSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKRGERRNSFSENEKHTHRIKDSENFRRKDRSKSKEMNRKHSGSRSDEDRYQNGAERRWEKSSRYSEQSRESKKNQDRRREKSPAKQK.................................................................................................................................................................................................................. 908
18 -10.000[A] KOG4676 Splicing factor, arginine/serine-rich  ali follow..  10  263....................................................................................................................................................................................................................................................................SSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGDSLRESKVNGDDHHEEDMDMSD................................................................................................................................................................................................................... 484
19 -9.970[R] KOG0226 RNA-binding proteins  ali follow..  16  145................................................................................ELLRTQALQSDIDKMNFKKQTDPFKKKIKEQQAKKKFVRSGGGQVWED-----PSLAEWDEND---RVFCGDL--------------GNEVSDELLAKAFRKYPSFQKAKV-----VRESRTNKSKGY------------GFVSFRDSEDYVRAMREMDGKYVGNRP--------IKLRKSAWKERNIDVIKQKRKQKKEL............................................................................................................................................................................................................................................................................................................................................................................................................................ 299
20 -9.850[R] KOG2295 C2H2 Zn-finger protein  ali follow..  8  186.........................................................................................................................KRQQLNEFFVAHKD--------------------EWFKNKYHPEDSVKRSEEQRLQRRTDVFGTIGSVKV--------------------------------DSSQADALIRVLDT----CVIKLEGGTDEDLKVLDEKPKDPVVYERKAEQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVK.............................................................................................................................................................................................................. 504
21 -9.770[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)  ali follow..  14  18.....................................................................................................................................SRSEQERSLRDSCTLYVGNLSFY---------------TEEQIHELFSRCGDVRVIVMGLDKYKKTPC-------------------CFVEYYVRSEAEAAMRFVNGTRL----DDRLIRVDWDAGFVEGRQYGRGKTGGQVRDEYR............................................................................................................................................................................................................................................................................................................................................................................................................................. 129
22 -9.690[T] KOG2370 Cactin  ali follow..  10  3......................................................................................................................................................................................................................................................................KDSKKHKKERRRERSPSTSDSDEERLQKRLAEQRSLKKDEKRRQKEEMKKNESAEEKRARRMEKKMRKDAKRKDADAEDTLIPPELNYTNLNNPFNDTKLTQTFVWGKKLEREGKSGLTQDEITKQTSQRIRKNLHEAAEFKRIRDSRAAAKEDMEMMKRDADLRAGQISDTKEREFQMDQIKERTRIRIDQGRAK........................................................................................................................................................................................................................................... 198
23 -9.580[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)  ali follow..  10  391..................................................................................................................................TKRLSKEEKGRSSCGRNFWVSGL--------------SSTTRATDLKNLFSKYGKVVGAKVV--------TNARSPGARCYG---------FVTMSTAEEATKCINHLHKTEL----HGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSTNLKRDDKCDRKDDAKKGDDGSGEKSKDQDDQKPGPSERSRATKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASKSQDRKSASREKRSVVSFDKVKEPRKSRDSESHSRVRERSEREQRMQAQWEREERERLEIARERLAFQRQRLERERMERERLERERMHVEHERRREQERIHREREELRRQQELRYEQERRP.................................................................................................................................................................................................................. 708
24 -9.540[S] COG2268 Uncharacterized protein conserved in bacteria  ali follow..  10  57....................GAIVMPIFHLKLEVSRATVDSLITKDR------------------MRVDVVVAFFVRVKPSVEG---IATAAQTLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENFVQG---------------------------------QNTVAEDLSKNGELESVSLTNFNQTSK------------------------EHFNPNNAFDAEGLTKLTQETERRRRERNEVEQDVEVAVREKNRDALERKLEIEQQEAFMTLEQEQQVKTRTAEQNAKIAAFEAERHREAEQTRILAERQIQETEIEREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQSQAEARANDALADAVRAQQNVETTRQTAEADRAKQVALIAAAQDAETKAVELTVRAKAEKEAAELQAAAIIELAEATRKKGLAEAEAQRALNDAINV............................................................................................................................................................................................................................. 441
25 -9.360[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)  ali follow..  11  130....................RVYVGSI--------------YYELGEDTIRQAFAPF----PIKSIDMSWDSVTFVEYE----VPEAAQLALEQMNSVMLG----GRNIKVGRPSNIGQ-----------AQPIIDQLAEEARAFNRIYVASVHQD---------------SDDDIKSVFEAFGKIKSCTLA-----RDPTTGKHKGY------------GFIEYEKAQSSQDAVSSMNLFDL----GGQYLRVGKAVTPPMPLLTPATPGGLPPAAA............................................................................................................................................................................................................................................................................................................................................................................................................................... 323
26 -9.350[R] KOG0151 Predicted splicing regulator, contains RRM, SWAP and RPR domains  ali follow..  7  746....................................................................................................................................................................................................................................................................VKKEKIDLILPTSRWAREDDETDDEQKKSYSSGSDNAGGITFKTDEEDLKADPSVRVQPENEIDVEQRQKLRHIEIALIEYRESLEEQGMKNSEEIERKVAIHRKRLEADGLSGNQRVLPEKREKREDSRDSSRKRNRSESQNRSQSPPQKSLTRERVRDHDLDKDRHRDRDRQQHDLDKDRKRRAKSSSRERDDHDRSRERDRDWRRRGMR............................................................................................................................................................................................................................. 957
27 -9.340[O] KOG0314 Predicted E3 ubiquitin ligase  ali follow..  12  539....................................................................................................................................................................................................................................................................EKSRIMNNSAVTSSPVKPKSRQGPPPPISSDYDRRRRSDRSSPERQSSRRFTSPPRSSSRKSERDRHHDLDSEHDRRRDRPRETDRKHRKRSEKSSSDPTVEIDDNNKSNVFTRISFPEESSGKQRKTSKSSPAPPESSVAPVSSGRRHHSRREREMVEYDSSDDEDRHFKRKPSRYKRSPSVAPSDAGDEHFRHSKRSKGERARA................................................................................................................................................................................................................................... 744
28 -9.230[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)  ali follow..  16  54...........................IKLFIG------QIPRNLDEKDLKPLFEEF----KIYELTVLKDRFTFLTYC----ERESALKAQSALHEQKT-LPGMNRPIQVKPADSE-------------SRGGSSCLRQPPSQDRKLFVGMLNKQQ--------------SEDDVRRLFEAFGNIEECTIL------RGPDGNSKGC------------AFVKYSSHAEAQAAINALHGSQTM................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 218
29 -9.160[R] KOG4208 Nucleolar RNA-binding protein NIFK  ali follow..  13  2............................................................................................................................................AAFSRSAGPILSLN-----------------EDAELQKEVAQCDTVTRFRLS-----RKKRTGNSKGY------------AFVEFESEDVAKIVTETMNSYLF----GERLLECHFMPPEKKMESISKTNHRMSTKGQVLRKKKKKVLGTP.................................................................................................................................................................................................................................................................................................................................................................................................................. 116
30 -9.130[TR] KOG4019 Calcineurin-mediated signaling pathway inhibitor DSCR1  ali follow..  13  1.......................................................................................................................................MEEVDLQDLPSATIACHLDPRVF---------VDGLCRAKFESLFRTYDKD--ITFQYFKSFKR---------------------VRINFSNPFSAADARLQLHKTEFLGK--------EMKLYFAQTLHIGSSHLAPPNPDKQFLISPPASPPVGWKQVEDATPVINYDLLYAISKLGPGEKYELHAATDTTPSHVCESDQEKEEEEEMERMRRPKPKIIQTRR............................................................................................................................................................................................................................................................................................................................................. 188
31 -9.050[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)  ali follow..  12  11..........................................................................LSGTQ----KEAALRALVQRTGYSLVQENGQR----------------------KYGGPPPGWDAAPPERGCEIFIGKLPRDL--------------FEDELIPLCEKIGKIYEMRMM------MDFNGNNRGY------------AFVTFSNKVEAKNAIKQLNNYEIASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNREYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGE....................................................................................................................................................................................................................................................................... 326
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;