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Query: [R] KOG2897 DNA-binding protein YL1 and related proteins, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETKATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKKKSRPTKRTFSGPTIRYHSLTMPAMRKPTRGANPAVDSKDLAGKCERTFVTIENDFNDKVFQSLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQAFKILREAYYMQLEQQGGGSEQPELAKWLEWRKLVKENRLKASAAASKNGDNLast
1 -150.000[R] KOG2897 DNA-binding protein YL1 and related proteins  ali  100  1MAASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETKATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKKKSRPTKRTFSGPTIRYHSLTMPAMRKPTRGANPAVDSKDLAGKCERTFVTIENDFNDKVFQSLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQAFKILREAYYMQLEQQGGGSEQPELAKWLEWRKLVKENRLKASAAASKNGDN 351
2 -24.200[S] KOG4137 Uncharacterized conserved protein  ali follow..  11  2.................................................................................................................SGSRGNSSNSSVSNNSNNNNNNDGGDERLLFLRSVGERNEIGFPSRFKSAHYKKPTRRHKSARQLISDENKRINALLTKANKAAESSTAARRLV----PKATYFSVEA---------------------------------------------PPSIRPAKKYCDVTGLKGFYKSPTNNIRYHNAEIYQLIVKPMAPGVDQE.................................... 154
3 -22.900[S] COG5195 Uncharacterized conserved protein  ali follow..  26  58..........................................................................................................................................................................................................................................................................PPSVLPQPKYCDVTGLLAIYTDPKTRLRYHNKEIYGLIREL............................................ 98
4 -11.500[A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain  ali follow..  10  11LREELQRRGTRGERLQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDE...................................................................................................................................................................... 203
5 -11.500[KLB] COG5165 Nucleosome-binding factor SPN, POB3 subunit  ali follow..  7  470.LRVKNEDREVQERLQTALGSDSDEEDINMGSAGEDDESVDEDFQVSSDNDADEVAEEFDSDAALSDAEGGSDEERPSKKPKVE........................................................................................................................................................................................................................................................................... 552
6 -11.100[S] KOG4610 Uncharacterized conserved protein  ali follow..  10  316...AEFWKNRRESRMAKSRQFQSRRKVQDADQNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSSSSSSS............................................................................................................................................... 520
7 -10.600[S] KOG2422 Uncharacterized conserved protein  ali follow..  12  1....MSGRL-----LKKVLQEHEDSKLQKHHEEEEEEDEEESGARSSINPFDLLNDGDEDPEEIDDETIAEKKNEDADHQSSVADHVQPVSKNKSKKKKKKKNKESGSNVPKAEMT--------LDETLEALGLNANSKQDKVQETKPNADSSKKASSRFVLEIDSKYLNLENELSKAMRSFESESGSQGGSSSRRGGRRGVHHITK................................................................................................................................................ 195
8 -10.100[R] KOG3362 Predicted BBOX Zn-finger protein  ali follow..  11  3IAQSKLFQ---GKN----LSSKLFKNSYLNCRRNEANGMQPRSIEVGGRHFSDIKCAFSKLIFLFLSTILISKMFAPSRKPAATANQLRASSRISNLEGNRTLDENARRNRRNRQLDGLEQDNSHDDPHANLVWNKNAPKFDDEMIGGPSAKKAKKVKEDKSGIVHGEKARRRKLARPEFNKQRFKKSFNAHVIEQSKAILDSAEPDYRRVNA------------------------------------------------QLSSAPPSEKPARKFCAVCGIISKYCCTRCGAKYCSLPCRDVHNDT............................................ 256
9 -9.720[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  7  486ISLIKQSKVAHDERCKILISSLQDEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSRERERDRDRERERDGGRSVRPRKSPEPVVAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAGGSMEKPRGQSAWDIIDTDAHWIIKQQTTSIPAPPSSQQN................................................................................................................................................. 696
10 -9.570[S] KOG4852 Uncharacterized conserved protein  ali follow..  13  153.......................AKRDELDLGDEDDSDGPPADDEDDSNDEDNWRNDYPDEESYDEDSDNGDPYGISEPDH.............................................................................................................................................................................................................................................................................. 210
11 -9.460[R] KOG2823 Cellular protein (glioma tumor suppressor candidate region gene 2)  ali follow..  12  214.........HPGMSYQALIDQVVEREEGIIKKE--VTPEERDRRRLNEMSQGMDEEEGSELDEDVQTNGKKKEDDDEKPYHTINAPVENKKKSKQARRNELKQKELARQTELKRKLKQQTADLIRIKSIRHELDDEEEDLNDLKKRRKQRAEKAKFEPKRLGRHKFEEPDLDVNLPEDIAGNLRNVKTLQRNNMLPTTKLVSRKKSK................................................................................................................................................ 440
12 -9.220[K] KOG4501 Transcription coactivator complex, P100 component  ali follow..  11  551......GLPGAPRNAEQLLDDKRDLKQLKERYQKYAMVEETTLERGEYDDEYDDSYEAQNEGQAPPVSLLRGRLQEAASSSAYNAQDELEND-----------DEESSGGHSDPEPSMRTNRDFCENPEVIRARYEQRQLSKYGQKSGGHGASPSVVGAPKGQGQSQQTQRSRGQKEAHKSTRAN------------HNRKAGAAFKRSKG............................................................................................................................................ 732
13 -9.010[Z] KOG1425 Microfibrillar-associated protein MFAP1  ali follow..  11  22IGQTKVRRYWPGKAPEWAEEAEEDDDVRMQKFS--VENRDEVRADHRRIRQAEIISTEEEESRNQENRDEDDDEDALEERRRRIKEKNLRRAQEEAALLPLEEEDEIQEEEEEEEESEYETDSEDDMPGIALIKRDTIAERERLEAEEEALEELAKRKLEQRKIETKQIVVEEVRKDEEIRKNILLEETREIGRIKRERDAREAMLRE............................................................................................................................................... 286
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;