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Query: [C] KOG3025 Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAMLast
1 -76.300[C] KOG3025 Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid  ali  100  1MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 142
2 -13.900[C] KOG0232 Vacuolar H+-ATPase V0 sector, subunits c/c`  ali follow..  25  85.................................................................SYYLFDGYAHLSSGLACLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILS... 155
3 -13.900[C] COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K  ali follow..  19  88................................................................................GGFAIAVSGFAQGKAAAGACDAFSETGKG----FATYLLVLGLIESVALFVMVFLMIFKFV. 144
4 -12.800[C] KOG0233 Vacuolar H+-ATPase V0 sector, subunit c``  ali follow..  28  128.................................................................HRNYHAGYSMFGAGLTVLSNLFCGVCVGIVGSGAALADAQNPS----LFVKILIVEIFGSAIGLFGVIVAILQ.... 197
5 -7.180[P] KOG4738 Predicted metallothionein  ali follow..  27  1..................................................................................MSCCGGSCGCGSACGNGCGGCKRYPDLENTATETLVLGVA.................... 42
6 -6.980[I] KOG4142 Phospholipid methyltransferase  ali follow..  12  110........................................................................VQGIAKLIFCFGSV--KLGLPERVSGFPFNVNDNPMYNGSTL--CFLSTALRGKVAGLLLTLEVFFVYRI 196
7 -6.960[H] COG4218 Tetrahydromethanopterin S-methyltransferase, subunit F  ali follow..  39  36......................................................................................................IARNQKLDSGVMSTGIIGFA---AGFLFSLLMVIIL.... 68
8 -6.410[C] KOG3352 Cytochrome c oxidase, subunit Vb/COX4  ali follow..  16  1MFMNSMLRVSRQRAAVRSTVSLYRGFVSASIRRNEQNVVKAAAQELANAKEPSDLIGPGGRDGEVPTDLEQAT-----GLERYELLSELSGRDAFDMKPLDGTLTDPIMVTSLDPYRHIGCTGSPS................ 125
9 -6.360[I] KOG3059 N-acetylglucosaminyltransferase complex, subunit PIG-C/GPI2, required for phosphatidylinositol biosynthesis  ali follow..  22  178...........................................................................................................SLNMAIFASVCLASRLPRSLHAFIMVTFAIQIFAL 212
10 -6.130[U] COG2443 Preprotein translocase subunit Sss1  ali follow..  15  60...................................................................................................ILRMARKPTRDEKVLLITAIGLLIIGGVGFIIYLLMDVY.... 100
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.