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Query: [U] KOG3088 Secretory carrier membrane protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDFDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGGVKMPNVPNTQPAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAGFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEKAQQEFATGVMSNKTVQTAAANAASTAASSAAQNAFKGNQILast
1 -124.000[U] KOG3088 Secretory carrier membrane protein  ali  100  1MSDFDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGGVKMPNVPNTQPAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAGFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEKAQQEFATGVMSNKTVQTAAANAASTAASSAAQNAFKGNQI 338
2 -9.060[R] COG5524 Bacteriorhodopsin  ali follow..  10  119.......................................................................................................................YSKYIAWFLSWPCLLFLIELAASTTGENDDISALDMVHSLLIQIVGTLFWVVSLLVGSLIKST---YKWGYYTIGA-VAMLVTQGVICQRQFFNLKTRGFNALMLCTCMVIVWLYFICWGLSDGG----NRIQPDGEAIFYGVLDLCVFAIYPCYLLIAVSRDGKLPRLSLTGGFSHHHATDDVEDAAPETKEAVPESPRASGETAIHEPEPEAEQA.. 327
3 -8.920[U] KOG3065 SNAP-25 (synaptosome-associated protein) component of SNARE complex  ali follow..  10  1MSAYPKNPFDDDGEDEGARPAPWRDARDLPDGPDAPADRQQY--RQEVLRRAEATAASTSRSLALMYESEKVGVASSEELARQRGVLERTEKMVDKMDQDLKISQKHINS.................................................................................................................................................................................................................................... 111
4 -8.660[S] KOG3269 Predicted membrane protein  ali follow..  12  61.........................................................................................................................................................................................SRIDVFGNMCLQILYVLVRVIISHSSHTWKNWIGLVLTSLGYGIPYKLLHQMAKPSVSDAGELLLHDVLYITCFVQVGSIISGKFWYAYLVIPAFGAYKASGLIKGLLSHGSEGGVEDEKTRKKREKMERKASRGQVVKTRSR.......... 217
5 -8.550[S] KOG4851 Uncharacterized conserved protein  ali follow..  8  32.GGLSLQTFANMKSENNRYNPSLIKKQKEFYKNAKYVSKFRKSLKQQNIPDKNETGETSKVGDDDDDDKRKGKSNKRIGVEDLKQTREEMERVRKEREAMFQAKKEAKEEAESRRKEAKGKMLRKTRHGQPVMKYRIENEI..................................................................................................................................................................................................... 184
6 -7.940[U] KOG1278 Endosomal membrane proteins, EMP70  ali follow..  11  510.................................................................................................................................HPTKTNQIARQIPYQYLRTAQATLIAGIFSFGSIAVELYFIYSSLWFNKIFYMFGFLLFSFLLLTL-VTILITYYSLWRSFIIGGLGCSIYTFIHSILFTKFKL-----------GGVITVVLYLGYSLIISALCCVVTG--AIGFFSSMFFIRKIYSAIK................................................ 670
7 -7.870[P] COG2076 Membrane transporters of cations and cationic drugs  ali follow..  15  1.........................................................................................................................................................MNWVLVFIAGLLEVVWASSLKHADS------LLDWIIIFILIAVSFIL----LIRSYQK--------------MAAAYTVFVGIGTVGTYLTGIV-----LGESFSAAQMFFLALLLAGILGM.............................................................. 96
8 -7.500[R] COG1380 Putative effector of murein hydrolase LrgA  ali follow..  12  1............................................................................................................................................MSKSLNIIWQYIRAFVLIYACLYAGIFLASLLPI-----PGSIIGMLILFVLLALQILPAKWVNPGCYVLIRYMALLFV-----------------------IGVGVMQYFDLLRAQFGPVVVSCAISTLVVFVVVSWS-----SHLIHGERKVVGQKGTKK.................................... 132
9 -7.490[S] KOG2490 Predicted membrane protein  ali follow..  11  4....NTSPGQADPLESENESSLTSRFLPNKRDGGKDNESVIPEKEEPDLNEPVLAVPLPKSRYALTKRSSSSEYPRRSASTSAKKNVIPITRSYSTTFFSKTNDQPTVTGNQDKPISRLRASKLQIQNFWNYICFELLANTPYAIEKTFLFGWFSFLYIFTLFPIRVLISFFTLSRPRSRKIDLLKLLLIFSTSILIRKI--VSRLYHIIRAQASIR--FYVLYNVLEIADRLCCALGQDVLDCL-FAISLAYMVLHTLVLLYQIITLNVTVNSYSNAVLALLMSNQLVEIKGAVFKKFEKENLFQLTCSDVVER....................... 375
10 -7.490[S] COG3601 Predicted membrane protein  ali follow..  11  1.............................................................................................MKNYSMKVFVSVAVLGTLAFILMMLQFP----LLPSAPFLKLDFS-DIPA-------LIGGLLFGPLAVILVELIKNVLLYIVSGSPVGVPVGELANFING--IFYVLPIYYLFHWFRSTKGMVLSTAVGTLVMTGAMVIFNYFVLLPFYIKLGGLPADTDVAWLVTYTIIPFSLLKGVIVSAVFLILYSRLKKWIAKNQTVKERRKFEKRQQETSH............................ 203
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.