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Query: [S] KOG3236 Predicted membrane protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTLFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAAVVYLATALVKLVCLATFLQVSETEVFDPYQEALKAMIGFIDVAGLYYALAQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYVLQGLEANANLVFTISLAALGSLMWLRKNKPKSLIPIIYTCAVIIATMPSITSYLKRVNGWHFPKIVGFELATSLVMAFISCQLFILCQRPSLLast
1 -107.000[S] KOG3236 Predicted membrane protein  ali  100  1MTLFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAAVVYLATALVKLVCLATFLQVSETEVFDPYQEALKAMIGFIDVAGLYYALAQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYVLQGLEANANLVFTISLAALGSLMWLRKNKPKSLIPIIYTCAVIIATMPSITSYLKRVNGWHFPKIVGFELATSLVMAFISCQLFILCQRPSL 228
2 -12.100[S] KOG3972 Predicted membrane protein  ali follow..  15  1MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVIIDNKDGPTQKYLLIFGAFVSVYI-AYYKLLKKASEGLKSINPAYVSGLGFGIMSGVFSFVNTLSDSLGPGTV---FLYSAFMTLVIILLHVFWGIVFFDGCEKKKWGILLIVLLTHLLVSAQTF............................................. 204
3 -7.230[S] KOG2568 Predicted membrane protein  ali follow..  11  160APLVNFYVYMSLAYLLLSAVWFFQYLRFRMDILPL------HCITAVILLGLLEMLFWYLDYANFNHTGMRPLALTTWVVTIGAL--------RKTVSRILILCVSMGFGVVKSTLGGLTSKVLLVGVTYFIASEILDIAEHVGIPDAFLDAFLILWIFTKRTSVKLEIYRKFSNALAVMVVASVAWIVYEVYFKATDWTITAFWDVIAFLLLCIICYLWTPSQNSQ. 407
4 -7.230[S] COG4377 Predicted membrane protein  ali follow..  12  8..VFLALSGAIAFLLPIGLIVWFKR-KYGASLKVFFIGALTFFVFAQLLEGGVHVYVLQVNEMTKEAMQHPLWYGIYGCLMAGIFYLMMRFFMKRHHTWADGLAFGAGHGGLEAIL--VYAFAINSGTFE-SYEWMLGGIERISAIAVQIGLSLLVLYAVKNRRPL-----FLLYSILLHALFNVPAVLYQRGIIEHAAAVEIIVALIAALSVYWIVKAKRVFQ.... 258
5 -6.730[S] KOG4610 Uncharacterized conserved protein  ali follow..  10  2AKIISTIKAILIIFSAHSLIWQVVALKSDIIYWALCGPLLLLLLEGIFTILYLSSIVPAIWLLELDKVARRVGNVATLLGQAGVTLSVTPDTWTTLIEQFLMLILIVGWDLTRDQLSQLLLVYIGTAAIEFFDSYKDDSIAKIGFLVFLTLGSWSLMQFTIVLSATRGRRPRGSGSHHKEEHTDCCQNCCCGIDVWGIVLNVILQDAPFLTFRLLIIFQYKIINYMNV 294
6 -6.230[S] COG2361 Uncharacterized conserved protein  ali follow..  19  8.........................................YLNHILNSIERIEEYTEGLEREDFLSSNLVQDGTIRQIEIIG-------EATKHLSRDFREKNPQVSWKDIAGMRDRLIHHYFGV-NLKDVWYTVKVDIPALKNDILAI.............................................................................. 108
7 -6.140[S] COG4906 Predicted membrane protein  ali follow..  11  32..ARQIFGFIALTFFPGYLLLKIFRTRLESFSEKIFLSVALSISVVMLMGIFANFVYPLLGVEKPITLLPILLTFNVVTLGLLAVEQARTVPMLNTRRQIRI--------AKWDLFFALLPVWS---------AYLFSHYGDNSGLLLLYFVIALTPLVFLKSKNFNRTFAIWSIAISLMWST............................................. 198
8 -6.080[A] KOG2412 Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor  ali follow..  11  296...........LTNSNQQLFKIQNELTQLINDTKGDSLAYHWILNFIAKAVVAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKGFTCEIDTEKGRQNMGWKRNNE-MGGILSLFAII-PIALSWHILARICNTPLNLITNTHFVILGSWWDAAAVQFLQAYGNQASKLLILIGEELTSRMAEKKYVGAARLRILLEAWQN................... 527
9 -6.070[S] COG2339 Predicted membrane protein  ali follow..  42AVLYLVVIVFLLSRTPLWPRFKGSGSKKGGGFAWAASSLLWGAFVGFGIVMLFAGPVMDLTDKLGWYPEEIAKA-------LGVAIILLSFRQLNRPWHGFITGVGLGFEVNENLL-YGATGAIMDPNADLDGVLMMWQYRTMLGPLIHTLLTGFALAFFRARKTVAWRWGVAIGWTLIAFALHFSWNLMWENVIGSYVTIIVVSVVMYGLAIYILWSNWAEARNDSS 278
10 -6.060[NU] COG4967 Tfp pilus assembly protein PilV  ali follow..  17.............................................................PLGVSLIEVLIALLVLGVGLLAFALLQTMNVRFTKSAQQRTIASNLAYELLDIMRSQ.............................................................................................................. 73

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.