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current user: public |
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Query: [O] KOG3259 Peptidyl-prolyl cis-trans isomerase, from COG1018 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 | |||||||
# | Score | Template | Links and tools | %id | First | MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE | Last |
1 | -91.900 | [O] KOG3259 Peptidyl-prolyl cis-trans isomerase | ali | 100 | 1 | MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE | 163 |
2 | -41.200 | [O] COG0760 Parvulin-like peptidyl-prolyl isomerase | ali follow.. | 16 | 209 | .VTDEELQAYYDEQMKVSFIAMDAAAMQSNITVTEEDIAAYYDQNRSSYTQPERRNYSVIQF---------------------KTEVEAKAALDELKKG-ADFAVIAKEKSTDISRNNGGELGWLEPETTPDEVK-AANLSEKGQLSDVIKSSVGYLIVRLND | 357 |
3 | -6.550 | [E] COG0549 Carbamate kinase | ali follow.. | 12 | 209 | ..........................................DKDWASARLAEMIDADMLIILTAVEKVAINFGKENEQWLDRLSLSDAERFIEE---------------------------GHFAKGSMLPKVEAAASFARSRKAKEGIEGKTGTVICQ... | 310 |
4 | -5.940 | [O] KOG0549 FKBP-type peptidyl-prolyl cis-trans isomerase | ali follow.. | 12 | 1 | ......................................................MKTAVIVGLLCLLAIAYAADEQKIDKLQIGVKKRAENCVQKSRKGDQLHMHYTGTLLDDSSRTRNEEFTFLGQGNVIKGWDQGLLNMCVGERRILIPPHLGY....... | 108 |
5 | -5.910 | [S] COG5451 Predicted secreted protein | ali follow.. | 12 | 97 | ...................................................SEILGAVQYLRTLCPSSGPEDWRKSMSALLAADTASEPERRQRMTAAFNRGYRSFAAIHTSCTRAAIMAEENYRNEGA---------------TLAQEIASRFG........ | 185 |
6 | -5.680 | [S] COG2164 Uncharacterized conserved protein | ali follow.. | 13 | 3 | ....................................................ERGVEMRLRIRFESAECEVELYEEWAPETVRAIADALPIKSTANRWGDEIYFTTQVAEENSKDVVELGDVAYWIPGKAICLFRPASAVNVIGRIVNSMEG........... | 116 |
7 | -5.650 | [J] COG0359 Ribosomal protein L9 | ali follow.. | 11 | 50 | ........................................................ARNYLIPKGLGVVATPGILRQVEQRRLKELERLKAEKDAAEARKVALETIGRFVIKKQVGEAEAIFGTVTTQEVADAVEAATQSLDRRGISLPDIHKTGFYQAQI.. | 155 |
8 | -5.430 | [S] COG4704 Uncharacterized protein conserved in bacteria | ali follow.. | 19 | 47 | ..........................................................CVSIFTSSQGFPGDRKRVFDRQCTQINETPLKLTFNNLKAG--TYAVAAIQDLNGDGTLNRNDLGMFSRNPEVPKFGDAAFILAGRNTTIQVQMKK......... | 150 |
9 | -5.420 | [S] COG1849 Uncharacterized protein conserved in archaea | ali follow.. | 13 | 3 | ..........................................................................EEELARKIERYFSIEEEALKKIRKIAEDNMQMILSYYSDAK--------FYAKGDLINAFAALNYSIDAGVRLGIFDGAGDHRLFTLYE | 97 |
10 | -5.230 | [A] COG5182 Splicing factor 3b, subunit 2 | ali follow.. | 12 | 245 | ............................................ERQLFELPSYIRATGI-----VQMRNAVHENEADMPLRQKMRERVQPKMGKLDIDYQKLHDAFFRYQTKPVLTGFGECYFEGK-----ELEADVKEKRPGDISEELREALGI....... | 346 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46. |