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Query: [S] KOG3270 Uncharacterized conserved protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTINNLTININILLPPQFPQEKPVISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLLDEFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEIDDFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQFHAPLLast
1 -89.700[S] KOG3270 Uncharacterized conserved protein  ali  100  1MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTINNLTININILLPPQFPQEKPVISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLLDEFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEIDDFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQFHAPL 397
2 -35.100[OU] KOG2391 Vacuolar sorting protein/ubiquitin receptor VPS23  ali follow..  13  12HQFLSSALTQAENTKSLIRQHLLNLISSYTSLDPKTATFGRSVILLQADGTIPMPFQGVSYNIPVVIWLLESYPQYPPCVYVNPTRPHSNVSPSGLVS-LPYLQNWIPSSNLVDLASHLSAAFSRDPPLYSQRRPPPQPSPSIGSGYSRPLPPRQTDDAAEVYKKNAINRIVEMVHGDIVLMRS--------------------------------------------------------------AREVETEGLLSLQSDLKRREEEINNGFKEMVIEKETLEQQLQVIAMNTDVLGSWIRENQGKAKDLLVDLDVDDSFECIDSLSKQMLECTALDLAIEDVVYSMDKSFRDGSLPFDQYLRNVRLLSREQFFHRATAEKVREIQMDAQVASIA. 363
3 -14.800[O] KOG0421 Ubiquitin-protein ligase  ali follow..  12  20.......TGSKQSAPPTKTVDSHSVLKRLQSELMGLMMGADPGISAFPEEDNIFCWKGEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNI............................................................................................................................................................................................................................................................................. 150
4 -14.300[O] KOG0417 Ubiquitin-protein ligase  ali follow..  11  2........................ATRRILKELKELQRDPPVSCSAGPTGEDMFHWQASGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMA...................................................................................................................................................................................................................................................... 138
5 -14.100[O] KOG0419 Ubiquitin-protein ligase  ali follow..  10  3......................TPAKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNADGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKV...................................................................................................................................................................................................................................................... 141
6 -13.800[O] COG5078 Ubiquitin-protein ligase  ali follow..  11  2............SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNVEESD............................................................................................................................................................................................................................... 164
7 -13.500[O] KOG0420 Ubiquitin-protein ligase  ali follow..  13  15........AQNATRGGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKD-------DLMNFEVSIKISPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNV...................................................................................................................................................................................................................................................... 158
8 -13.400[O] KOG0416 Ubiquitin-protein ligase  ali follow..  13  1.....................MSSPRRRIETDVMKLLMSDYEVTLVNDNQEFYVRFHGSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDESGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPASDPLNGEAAALLLREPNTYYAKVRDYIARYANKEDADITLNDSSDDDTMSSIDTESGDEIAGPMDSD.......................................................................................................................................................................................................... 183
9 -13.400[O] KOG0418 Ubiquitin-protein ligase  ali follow..  12  2..........SNIAFNRLQRECKEVVTNSEISETGIMIENENLTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQGVICLDILKDQWAASLTLRTVLLSIQALMCTPEPKDPQDAVVAKQYMEKPAVFKATA...................................................................................................................................................................................................................................................... 145
10 -12.900[O] KOG0896 Ubiquitin-conjugating enzyme E2  ali follow..  12  59..........................................................ENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ................................................................................................................................................................................................................................................................... 141
11 -12.400[O] KOG0424 Ubiquitin-protein ligase  ali follow..  11  54..........................................................EGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLS---KDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRA.................................................................................................................................................................................................................................................... 150
12 -12.400[O] KOG0425 Ubiquitin-protein ligase  ali follow..  15  1................MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDL----EGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCIS---ERWNPTQNVRTILLSAISLLNEPNT............................................................................................................................................................................................................................................................................. 136
13 -11.900[O] KOG0426 Ubiquitin-protein ligase  ali follow..  11  2..........AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISSSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ.................................................................................................................................................................................................................................................... 157
14 -10.400[O] KOG0897 Predicted ubiquitin-conjugating enzyme  ali follow..  13  218........SGSVQATDRLMKELRDIYRSDAFKKESIYEWNIRLKSVDPDSPLMLKEKEGKDSILLNILFKETYPFEPPFVRVVHPIISGYVLIGGAICM--TKQGWSSAYTVEAVIMQIAATLVKGKARIQFGATKALTQGQYSLARAQQS...................................................................................................................................................................................................................................................... 376
15 -9.060[O] KOG0894 Ubiquitin-protein ligase  ali follow..  2....................ASKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNTRCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEITTGGIVTSESTRRTYAKDTKRFNIMDNPKFLIMFPELIDKNREDIAKAAAEAALIEPQQIHSTPVSSNECKKNEPFNSKQSWVKSR....................................................................................................................................................................................... 206
16 -9.050[U] KOG0946 ER-Golgi vesicle-tethering protein p115  ali follow..  10  652...............................................................................................................VTHYKNMIREQDLQLEELRQQVSTLKCQNEQLQTAVTQQVSQIQQHKDQYNLLKIQLGKDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTSGTNEQSSAIVEQVAELKQELATLKSQLNSQVEITKLQTEKQELLQKTEAFAKSVEVQGETETIIATKTTDVEGRLSALLQETKELKNEIKALSEERAIKEQLDSSNSTIAILQTEKDKLELEITDSKKEQDDLLVLLADQDQKILSLKNKLKDLGHPVEEEDELES.. 942

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.