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Query: [R] KOG3362 Predicted BBOX Zn-finger protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKIAQSKLFQGKNRLSSKLFKNSYLNCRRNEANGMQPRSIEVGGRHFSDIKCAFSKLIFLFLSTILISKMFAPSRKPAATANQLRASSRISNLEGNRTLDENARRNRRNRQLDGLEQDNSHDDPHANLVWNKNAPKFDDEMIGGPSAKKAKKVKEDKSGIVHGEKARRRKLARPEFNKQRFKKSFNAHVIEQSKAILDSAEPDYRRVNAYQLSSAPPSEKPARKFCAVCGIISKYCCTRCGAKYCSLPCRDVHNDTRCMKWLALast
1 -110.000[R] KOG3362 Predicted BBOX Zn-finger protein  ali  100  1MKIAQSKLFQGKNRLSSKLFKNSYLNCRRNEANGMQPRSIEVGGRHFSDIKCAFSKLIFLFLSTILISKMFAPSRKPAATANQLRASSRISNLEGNRTLDENARRNRRNRQLDGLEQDNSHDDPHANLVWNKNAPKFDDEMIGGPSAKKAKKVKEDKSGIVHGEKARRRKLARPEFNKQRFKKSFNAHVIEQSKAILDSAEPDYRRVNAYQLSSAPPSEKPARKFCAVCGIISKYCCTRCGAKYCSLPCRDVHNDTRCMKWLA 263
2 -28.400[S] KOG4137 Uncharacterized conserved protein  ali follow..  15  2................................................................................SGSRGNSSNSSVSNNSNNNNNNDGGDERLLFLRSVGERNEIGFPSRFKSAHYKKPTRRHKSARQLISDENKRINALLTKANKAAESSTAARRL-------------------------------VPKATYFSVEAPPSIRPAKKYCDVTGLKGFYKSPTNNIRYHNAEIYQLIVKP....... 146
3 -27.100[K] KOG2857 Predicted MYND Zn-finger protein/hormone receptor interactor  ali follow..  33  4............................................................................................................................................................................................................................RATQTCEICEVVSKYKCPSCLVPYCSLGCFKIHKVCNLINNA. 46
4 -23.700[S] COG5195 Uncharacterized conserved protein  ali follow..  14  2........................................................................................................................................................EKNSSVDSLDISLLARPFRNPNYKAQPRRNRNLRQIIQNDPVQ-------NEPSKFSYSSIEAPPSVLPQPKYCDVTGLLAIYTDPKTRLRYHNKEIYGLIREQEYLK... 108
5 -22.800[R] KOG2858 Uncharacterized conserved protein  ali follow..  40  2..............................................................................................................................................................................................................................AVLCGVCGKEFKYKCPRCLVQTCSLECSKKHKTDNCS.... 40
6 -20.800[S] KOG4317 Predicted Zn-finger protein  ali follow..  31  3.........................................................................................................................................................................................................PEKTIISSESSNSSPLNPSSTRIICHVCNQFSQYTCPRCNFRYCSLPCYKSHSVQCTESFM. 64
7 -12.900[R] KOG1710 MYND Zn-finger and ankyrin repeat protein  ali follow..  37  319...............................................................................................................................................................................................................................QFCSVCGHPGAKKCTQCKLAYCSQECQKIHKKV-CSF... 359
8 -12.200[R] KOG4582 Uncharacterized conserved protein, contains ZZ-type Zn-finger  ali follow..  19  115.....................................................................................................................................................................................................................DPSNFTIHDAVECDGCGLAPRYKCVQCNYDLCQ-KCEHKHPEHLMLR... 167
9 -12.000[O] KOG0824 Predicted E3 ubiquitin ligase  ali follow..  39  24.................................................................................................................................................................................................................................CAVC-MILPTTIPSCGHKFC-FICLKVSNNGDC..... 60
10 -11.700[R] COG3582 Predicted nucleic acid binding protein containing the AN1-type Zn-finger  ali follow..  25  18.................................................................................................................................................................................................................................CAYCRQ--PFHCSFCNEDFCS---KEDHH---CRW... 52
11 -11.400[S] COG4306 Uncharacterized protein conserved in bacteria  ali follow..  16  26............................................................................................................................................................................................................................LWEAFCSHSGEATILQYPKCSATFCN----------NCGSRFP 79
12 -10.700[R] KOG4299 PHD Zn-finger protein  ali follow..  7  1MDAKWNHTSEAFQASILEDLKIIQKAGAERNAKSSHGSINSRSASPNKATSRRNRAQNGNSNGRASVDNSDDGSKDDLDYSPSVKRKHVNGEGAEKGDHDTSNNGPSITKLRRKVRRTYDTKDGFVAWNTLDDDFRPIVPDQERSRKINPQKGNNNNLLKENKSLKTTAKDLSDISSSSMKKANNSSKPLFSGKLTFKANIPVPTSEVVTENNVTRNVTVYSNQYCSACHGPGNFLC--CE---CPFTCIDPPIEEKCNE... 308
13 -10.600[A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain  ali follow..  5  6LKVNELREELQRRGLDTRGLKTELAERLQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHRED............................................................................... 189
14 -10.500[O] KOG1813 Predicted E3 ubiquitin ligase  ali follow..  21  277.................................................................................................................................................................................................................................CFIC---EPFVDPKCKHYFCE-HCALKHKNKKC..... 311
15 -10.500[O] KOG0978 E3 ubiquitin ligase involved in syntaxin degradation  ali follow..  9  631LDLSEREVLELKEGIKVKEQEAEASIAEMETIGQAYEDMQTQNQHLLQQVAERDDYNIKLVSESVKTKHAYNTHLSEKQVMEKQLHQVNASVENFKARIAHEEQMKGCFSEAYKLIQEDRHLVISLETTKWEVADADKEFRWLKSAVSSSEKEYEQISRRTDDIKLELDDEREKKKLEEELMELNKELEELGSESVEAAIVRLQEEVKNCKNI------------CGVCFDRPK---VKCYHLFCQ-QCIQRSLEIRCGTAFG 890
16 -10.500[R] COG5222 Uncharacterized conserved protein, contains RING Zn-finger  ali follow..  11  30LKIQENKLGDGTNPDTEEEYDDDAFVIPRSTS-----------VKRSPAIKSFSVHSRLKGNVGAAALGNATRYVTGRPRVLQKRQHTATTTANVSGTTEEERIASMFATQENQWEQTQEEMSAATPVFFKKNCPTNSDPNFEGKRIRRTTGIPKKFLKSIEIDPETMTPEEMAQRKIMITDEGVQVEDKQSWEDYQRKRENRQIDGDETIWRKGHFKDLPDDLKCPLTGRQPVKTSKCCNIDFSK-EALEVESDFVC..... 327
17 -10.300[R] KOG4323 Polycomb-like PHD Zn-finger protein  ali follow..  7  1...........................................MSQKNFFDEGKSYGVNDYAGFHFENGADSSLPQVSAQGVVRETDSSNFDASPVASGSGISDVGPFGADFHQLQQHVQTPYGGMTMPASSSSGATSVPPEQDPSLSVSFNRLPKSASTKTKNGRIRSSRREDDNRIPFYDLDVAEGAEDDLQEDFHVEGMKTKSNPNATALKRKSRKVDMVTLCSVCQR-----CDGCNSPYC---C------MKCQ.... 244
18 -10.200[S] COG5291 Predicted membrane protein  ali follow..  9  178LGIVVGHLF-GRDILSTPCWVKKLFNEHPSSCCKARKGITIREGRERHERNMGYSNASTTSGDSMASLTDMADTKSSTENSAVTEESQCCAESFKDSSVVSSQKSMAVSTVVGSSTEAKNNYLDFTEALCDKEVVAEQNPESQSNEEWDEKWGDSDNESECS..................................................................................................... 348
19 -10.100[R] KOG2897 DNA-binding protein YL1 and related proteins  ali follow..  11  1..MAASRSRRGNK-LNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETKATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKKKSRPTKRTFSGPT-SLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQAFKILREA....... 307
20 -10.000[KL] KOG2487 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4  ali follow..  8  1MDEFQTLKQNASWDISE-SLLVVILDAPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKVEYLYPSIAPEQKVAEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSRKTMISGALSRALAYINQVQNKNTLRSRILIFSLTGDVALQYIPTMNCIFCAQKKNATGGIYLKVDNPKGLLQYLMMSLFPDQNLRKHLNTPNQANVDFRATC-FCHKK--FVCSVCLSIFCEPRC------STCHTKFT 287
21 -9.870[O] KOG4275 Predicted E3 ubiquitin ligase  ali follow..  32  3.................................................................................................................................................................................................................................CESCGFRRKRACFDCKRYYCA-NCIASRRCKRCS.... 40
22 -9.740[R] COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers  ali follow..  8  27......SRRRHRPRQGLKRKKGFKRDDDSGGSSESSNEDMRDNIPIVSGRKKTVRLNRLQRESEQFENSALKDINVEYQSNLSATGESVNTTTVSAINEDTREVILGRPSPKLANQSTLPTELFQSQNDYSRFLPKRKDFEKKSQVGPVLSSNASTVRMNTIKDYKLTGYCGYGDTCKFLHMREDYKAGWQLDREWDSVQEKYKKGAKLEEGMVKNEKKEDIPFVCLIC---KDYRSPTCGHHFCE-QCAITRKTPTC..... 288
23 -9.670[S] KOG4850 Uncharacterized conserved protein  ali follow..  36  216.................................................................................................................................................................................................................................CLGC-----YACPACGSTKCGAECRCDRK......... 240
24 -9.660[S] KOG4149 Uncharacterized conserved protein  ali follow..  10  1M-FAKNLLFRFPKCIRINGYNNMRRSLLQRNGFQAGICRKFGTATKTDVWKGRFLPIVSGVAAASLTAGYKNTSNASSSQDNDHPVVGEHVHTETQSYNEPYMQRHRIEDAIEKKMTSETQPSTDEKGRKVSATENSAPKKTDKEKSSGETAGNILREQIATGKDDDEYARKFEEVEEESSEESAFNPDTGEI--------------------------------CPCCGFKAAFSC-ECLDKFQAMACFQKHPE........ 249
25 -9.610[O] KOG0826 Predicted E3 ubiquitin ligase involved in peroxisome organization  ali follow..  18  208.............................................................................................................................................................................................SNDQRRKVGGTLINPEAMPRKQLPKEVQQSLPQRGECPVCLLSTPTACSVSGYVFC--KCIVSHEHGTC..... 279
26 -9.500[R] KOG4602 Nanos and related proteins  ali follow..  8  1MRMASRLLTE--VGTASQAFDKHLPGNRARCPESLDWMSRWGERDRDTQAGAQASQGHWFTGVITPSPAIAIRLHCETPPASCPPPPEAPGWGALPSPPTPHIAMPGPRPPHPLTHPQCPLCDLRSERAVQEPLLLLRDQEAASRLHRRSLSPGSALAFGLPLAQLTSLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQLGAPGANGGLGTLCNFCTPDGVVVCPILRHYVCPV-C-QAHTLKYC..... 284
27 -9.390[O] KOG1571 Predicted E3 ubiquitin ligase  ali follow..  8  34LKAAPGDLKSVVERQRDKKIPYAVIRGTVTPIGVPLRSSLVPSVSGVLQIVKLHEHELRNQSHGVEIVDALSAAVLDVDVVYDNYEPSNLSLFDHVFGFFSGVRQRGLQTTEEVLREGSFLTAIGELELDGDTLRMQPSNEGPLFLTTATKSTLIKRFEDAKTTTILKLVVCSTISAILVAFIAKKLYRKRKQEREEAKIRERLDTERRERRARSRPHTLSQDQLCVVCTNPKEIILLPCGVCLCE-DCAQK--SVTC..... 322
28 -9.240[K] KOG1244 Predicted transcription factor Requiem/NEURO-D4  ali follow..  12  1MAAVVENVVK-KDAMEQCHNYNARLCAERSV--DSQTGVAQSNCYIWMEKRHRGPGLASGQLYSYPADGSSLEALLRTDPLEKRGAPDPRVDDDSLGEFPVTNSRARKRILEPDDFLDDLDDEDYEEDTPKRRGKGKSKGKGVGSARKKLDASILEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPPTPVSQRSEEQKSKKGPDGLALPNNYCDFCLGDSKVSCSDCGRSGCNI-CGTSENDDQCDRGY. 352
29 -9.190[B] KOG2084 Predicted histone tail methylase containing SET domain  ali follow..  8  89RRAQADKLYLMSGSGDGMAANLAVMRAPDRNADPVLDEGLTRSRASILIRLGEGEAALNDLKLAI-----------NFGLELKSSVDYYLKMAKAYAVMGEPARAEISLKIAEKMPGCDATHIALCRKELSSVKPKPKEATSEQVPQLAHGESAELVGASKVVRLVETKDKGRFVVANEGLRTGDVLLFEEPVAACLEPSY--------------------FGTHCHHC-LHTPVSCLHCSIAFCSAQCCSSYHRFEC..... 338
30 -9.050[OU] COG5082 Arginine methyltransferase-interacting protein, contains RING Zn-finger  ali follow..  30  96............................................................................................................................................................................................................................PKAIQCSKCDEVGHYRCTLCKSK-CTIYCYN-HFGDDCKE... 179
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;