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Query: [J] KOG3401 60S ribosomal protein L26, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKQNPFVSSSRRKNRKRHFQAPSHIRRRLMSAPLSKELRQKYNVRSMPIRRDDEVQVIRGHFKGNQVGKVVQAYRKKFVVYVEKIQRENANGTNVYVGIHPSKVLIVKLKLDKDRKAILERRGKGRLAALGKDKGKYTEETAAQPMETALast
1 -86.800[J] KOG3401 60S ribosomal protein L26  ali  100  1MKQNPFVSSSRRKNRKRHFQAPSHIRRRLMSAPLSKELRQKYNVRSMPIRRDDEVQVIRGHFKGNQVGKVVQAYRKKFVVYVEKIQRENANGTNVYVGIHPSKVLIVKLKLDKDRKAILERRGKGRLAALGKDKGKYTEETAAQPMETA 149
2 -15.900[J] COG0198 Ribosomal protein L24  ali follow..  30  4................................................IRRDDEVIVIAGKDKGKR-GKVLKVLADDRLVVGGVNLIKRHTKPEKEAPLHVSNVAIFNTETSKADR................................. 81
3 -7.050[K] COG0250 Transcription antiterminator  ali follow..  22  120.............................................SVSFEIGEQVRVSDGPFAS--NGTVQDVDEERSRLKVE-----SIFGRATPVELEYGQV............................................. 173
4 -7.030[I] COG1607 Acyl-CoA hydrolase  ali follow..  16  12....................AARHCRRETVTASMDS-----------PIGQKDSVCL---------ESYVTWVGTSSMEVFVKVIKEHLMTGERVALDSNGKPVPVPRVVPETEEEIMLHNTAVQRANERKNRKRHSQALANALGTD.. 133
5 -6.530[R] KOG4315 G-patch nucleic acid binding protein  ali follow..  24  298..............................TQELVQGIDQEL-LETALPRRGGSVLVLSGRHKGV-YGRLVEKDLDKETGVVC------------------DSQEMLHVKLDQ.................................... 362
6 -6.060[T] KOG4792 Crk family adapters  ali follow..  16  249.......................................NAYDKTALALEVGELVKVTKGQWEGGCNGKR----------HVRLLDQQNPDEDF....................................................... 303
7 -5.990[NU] COG3168 Tfp pilus assembly protein PilP  ali follow..  20  101..............................TFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDV..................................................................... 150
8 -5.870[H] COG2104 Sulfur transfer protein involved in thiamine biosynthesis  ali follow..  10  3VVVNEQQVEVDEQTTIAALLDSLGFGDRGIAVALNFSVRSDWATKICELRKPVRLEVVTAVQGG..................................................................................... 68
9 -5.720[S] KOG2585 Uncharacterized conserved protein  ali follow..  11  7...................................................GSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGD--ITELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGK 102
10 -5.690[J] COG0012 Predicted GTPase, probable translation factor  ali follow..  15  1MEIG--VVGKPNVGKSTFFSAATLVDVEIANYPFTKELGCKPNPQNIPVKMIDVAGLVPGAHEGRGLGNLDDLRMASALIHVVDVTGKTDAEGQPTENHDPEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEH..... 171
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Liu T, Rojas A, Ye Y, Godzik A. Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family. Protein Sci. 2003 Sep;12(9):1872-81.