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Query: [U] KOG3487 TRAPP 20 K subunit, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHLLSLast
1 -78.300[U] KOG3487 TRAPP 20 K subunit  ali  100  1MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS 140
2 -58.500[N] COG5603 Subunit of TRAPP, an ER-Golgi tethering complex  ali follow..  41  1..MPQYFAIIGKKDNPVYEIEFTNAENPGFPQDLKELNPFILHASLDIVEDLQWNTDNCYLGKVDHFYGLAITAYISYSGMKFVMIHGNSDDNNMRSFYQEVHELYVKTLMNPFYKITDPIRSPAFDSRVRTLARKHL.. 173
3 -49.400[S] KOG3444 Uncharacterized conserved protein  ali follow..  29  2................................EQELELQYHVNAALDVVEEKCLIGKELYLGLLYSTENHKIYGFVTNTRVKFIVVIDSSRENEVRAIFRNLHLLYTDAICNPFYIPGESLTSKKFDRAVQKLMSGT... 116
4 -47.800[U] KOG3369 Transport protein particle (TRAPP) complex subunit  ali follow..  18  1MI-IYGVYIVSKSGGLIFNLDNNVPRSRPKMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEILEADTFTLHCFQTLTGIKFIIISETGLNG-IDLLLRKVYELYSDYVKNPFYSLEMPIRCELFDNKLQELLAQV... 209
5 -45.700[U] COG5122 Transport protein particle (TRAPP) complex subunit  ali follow..  17  1MA-IETILVINKSGGLIYQRNFTNDEQKLNSNEKHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVAIQIADNFLRKVYCLYSDYVMDPSYSMEMPIRSNLFDEKVKKMVENL... 218
6 -43.700[U] KOG3368 Transport protein particle (TRAPP) complex subunit  ali follow..  14  2..TIYAFYIYSRKCECVFAHRWKPSDRNSMIEDDMEKLIFGVVFSLRNMVKKITADQD--QFMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFVKHPLYTHVPPINCEIFRITLDRFVRT.... 151
7 -12.300[O] COG5541 Vesicle coat complex COPI, zeta subunit  ali follow..  5LYAVNAFLILDSSGKRIFTKYYAPPHLKEGEG-----GVFNSVKEEKTFEKGLFEKTWKTQNDILTYDGKLV-VMLTVMDVIFYIVGGMEENEMLYECLRSIRDALELLFKYVPDKRTLLENYDQLVIVVDETID..... 134
8 -10.500[U] KOG3343 Vesicle coat complex COPI, zeta subunit  ali follow..  10LYTVKAILILDNDGDRLFAKYYDDTYPSVKEQK--------------AFEKNIFNKTHRTDSEIALLEGLTV-VYKSSIDLYFYVIGSSYENE-LMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVD..... 130
9 -8.760[U] KOG0936 Clathrin adaptor complex, small subunit  ali follow..  11  1..MIKAILIFNNHGKPRLSKFYQPYSEDTQQQ--------IIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESE-ILDLIQVFVETLDKCFEN-VCELDLIFHVDKVHNILAEMVM..... 125
10 -7.960[U] KOG2635 Medium subunit of clathrin adaptor complex  ali follow..  1M-VLIAACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLI---------GNEKEAATRQHTFVETDSVR-YVYHPLDNIYLVLVTTKNSNILE-ETLRLFVRVIPEYCRS-----EKEILAHDFDFAFDEVVT..... 124

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.