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Query: [U] KOG3838 Mannose lectin ERGIC-53, involved in glycoprotein traffic, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRPTFLAILCFLAWNPSSEATGNLSPGAVGVHRRFEYKYSFKPPYLAQKDGTVPFWEYGGNAIASSESVRVAPSLRSQKGAIWTKSQTNFDWWDVEIVFRVTGRGRIGADGLAFWYTTEKGDYNGPVFGSSDRWNGLAIMFDSFDNDNKHNNPYISAVLNDGTKLYDHAEDGTTQLLSGCLRDFRNKPFPTRARIEYYNNVLTVMIHNGMSNNNDDYELCLRADGVNLPKNGYFGISAATGGLADDHDVFHFLTTSLHAAGQVQEQPKVENQEKLTQEYKEYQDKLEKQKQEYKKDHPDEHKDEEDWEEFYESENQRELRQIWQGQSQIADHLRELSRKVDEIIGRQETTLSLVSRNAGQALPPPAAGGVPQQQLPVGAVSRSDVDLLLTNQNMLLSSIREIRQLVGDINVRTDNIQTNQKHAPTAQIQSTGYDVQTLIAEMRDGMNQVKQGITHVGQRLAAPQGAAQVANCPTGNCVGVTLFLSVTVVQLLLVFIYNVFKNRSEAQAKKFYLast
1 -120.000[U] KOG3838 Mannose lectin ERGIC-53, involved in glycoprotein traffic  ali  100  1MRPTFLAILCFLAWNPSSEATGNLSPGAVGVHRRFEYKYSFKPPYLAQKDGTVPFWEYGGNAIASSESVRVAPSLRSQKGAIWTKSQTNFDWWDVEIVFRVTGRGRIGADGLAFWYTTEKGDYNGPVFGSSDRWNGLAIMFDSFDNDNKHNNPYISAVLNDGTKLYDHAEDGTTQLLSGCLRDFRNKPFPTRARIEYYNNVLTVMIHNGMSNNNDDYELCLRADGVNLPKNGYFGISAATGGLADDHDVFHFLTTSLHAAGQVQEQPKVENQEKLTQEYKEYQDKLEKQKQEYKKDHPDEHKDEEDWEEFYESENQRELRQIWQGQSQIADHLRELSRKVDEIIGRQETTLSLVSRNAGQALPPPAAGGVPQQQLPVGAVSRSDVDLLLTNQNMLLSSIREIRQLVGDINVRTDNIQTNQKHAPTAQIQSTGYDVQTLIAEMRDGMNQVKQGITHVGQRLAAPQGAAQVANCPTGNCVGVTLFLSVTVVQLLLVFIYNVFKNRSEAQAKKFY 512
2 -57.400[U] KOG3839 Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans  ali follow..  21  1MFFSVKNVFLLGIFGFVLGALA---------ETSHLERLSLEAPYI-NHGMRNLWWEYGGSTVIRKNGIFLTQDVQNQQGWISTRLPTPSSSFEVLFQFRINSESTSFGDGLAFFLAAER-AKPGPVFGFTDKFNGYGIFIDTYNNHRPGTFPRVIVMKGDGHTPYDYENDGKANEIASCSALNVRGNDYNLGKLKYDKNAKKLRFEIAYQGSS-SFIKCFDLNEVELPLTTFMSFSAHTGDLSESHEIASILSRTITDIDDEGTPEIPAEELKGTTYGQKKG..................................................................................................................................................................................................................................... 274
3 -11.000[U] KOG3202 SNARE protein TLG1/Syntaxin 6  ali follow..  7  13................................................................................................................................................................................................................................................................................SNQMEQVRKLYNSFMAARNSGVLSPNTELTYAIDELSETLKDLKAAVEIAMKNSEHFGLDEEELKSRRRFVSELDIELNNIQLKMGAAPSTPVSTEPYTVDNGASAGLSEEDHAVNRQYQEQLYQQQDVMLDGVYDTIGNIRGQAALMGEELGQQADLLD-TLDNSIETTNSKLRRGMKRLKDFTIASADS----------------KSGCCITVLIIILIALLVLVIV........... 224
4 -10.400[U] KOG1666 V-SNARE  ali follow..  9  2.............................................................................................................................................................................................................................................ASSAASSEHFEKLHEIFRGLHED---QGVPERLLGTAGTEEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRNYRKDLAKLHREVRSTPLT----ATPGGRGDMKYGIYAVENEHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQLER----------------TKSRLVNTSENLSKSRKILRSMSRKVTTN-----------------KLLLSIIILLELAILGGLVYYK.......... 227
5 -10.400[U] KOG0946 ER-Golgi vesicle-tethering protein p115  ali follow..  10  711...........................................................................................................................................................................................................................................DNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSVEVQGETETIIATKTTDVEGRLSA---LLQETKELKNEIKALSEERTAIKEQLDSSNSTIAILQTEKDKLELEITDSKKEDLLVLLADQDQKILSLKNKLKDLGHPVEEEDELES............................................ 942
6 -10.300[U] KOG0809 SNARE protein TLG2/Syntaxin 16  ali follow..  10  79...........................................................................................................................................................................................................................................WVDVSEEISVNIQRARTKMAELGKAHAKALMPSFGDGKEDQHNIESLTQEITFLLKKSEKQLQRLSASGPSEDSNVRKNVQRSLA------TDLQLLSMELRKKQSTYLKRLRQQKEDGMDLEMNLSRNRYRPEEDDFGDMLNEHQMSKIKKSEEVSVEREKEIQQVVESVNDLAQIMKDL------------SALVIDQGTIVDRIDYNIENVATTVEDGLKQLQKAERTQR--HGGMVKCASVLVILCFIMLLLLIL--------------KEIF 321
7 -10.300[U] KOG3251 Golgi SNAP receptor complex member  ali follow..  12  62...............................................................................................................................................................................................................................................................................................................QRELVPAKKKKATIRIQEFRQKHVQLLEKFDELKAHVRDIAQAKNRKELLGRRGYVNSLDSPYGNSTTDAEIVEGPSDLSRQDGLLKEHDFLGRAESQVDEFLERGRMILGDLVEQ---------GSVLKATKTKVLNAANTLGITRHTLSLINRRSKQDK------------------IIFYCGAFLVFVLFYLIYRWLR........ 235
8 -9.910[S] KOG3156 Uncharacterized membrane protein  ali follow..  8  32.......................................................................................................................................................................................................................................................................................................................................NTNHFKDLLIENGKFQEDQATTIVEIMTDAIRGVNHVSQDLAKREKLTQLSYQQRVDFAKLRDQLLSADRSEHNIQNEYESVKNDLEKLRNKLREEITKTNAGFKLDLSLEKGRIREESSHHDLQIKEIDTKIEQEVTNMKMQIDSVKTQVMQWLIGVCTGTFALVLAYMRLLT........... 207
9 -9.630[R] COG4980 Gas vesicle protein  ali follow..  7  38.............................................................................................................................................................................................................................................................................................................................................................................................KTNYDSFEETIKRLKSDGLALKDQLIKAAKESTDVIKDVGGELQTSIKKWQEEIKPHQQDLQKEIADIEEKIRQLEKTLQN.................................................. 118
10 -9.620[U] COG5325 t-SNARE complex subunit, syntaxin  ali follow..  9  58...........................................................................................................................................................................................................................................WVTVEGEIDSLLLNTRRNINLLDKQYAKHVLPSFSDKTEQENEIQRLTIQITQDFQRCQKLLQVTKAQTNSATGSEALMAKNFLSNLASRIQTESAQFRKKQSTYLKKLRGLNANISPVESKLDETVSDVAISQSTIQQ-----VALMEEQGEDEQAIRHERAVAKIAEGIIELAQMFQDL------------QVLVIEQGALVDRIDFNIEQTQVHAKSAEKELIKAESHQKNT--------GRLRFICFLILLIVALIVILAIKLLR........ 301
11 -9.530[R] COG1579 Zn-ribbon protein, possibly nucleic acid-binding  ali follow..  8  12........................................................................................................................................................................................................................................................................................................................QELDIKMIRLMRVKKEHQKELAKVQSLKSDIRRKVQEKELEMENLKTQIRDGENRIQEISEQINKLEKKMDEFNALTQEMTTANKERRSLEHQLSDLMDKQAGGEDLIVS-LKESLASTENSSSVIEKEIFESIKKINEEGKALLEQRTE----------------------LKHATNPELLSIYERLLNNKKDRV.... 190
12 -9.530[R] COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain  ali follow..  14  25............................................................................................................................................................................................................................................................................................................................KTLKSTSQTMDEVAKSLEKITVEVQGITGQSQKLLDKTNTLLEDVNGKV-----------------AKVDPVFDAVGDIGTSLLGLSQSVRELATLATNKVEQNEAKISQAVS................................................................................... 120
13 -9.120[S] COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain  ali follow..  12  16..........................................................................................................................................................................................................................................GIIAALGDHLGS-RLFKLRPRQTAVLLTVITGTLISASTLGILFTFSKSLREGVFQLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERSRELNRNYTKALQLLRRVSEQSRNLRQEVANLSAERAQLNEQKDSLLAESSELQSQVKLRDQELSKRQERIAQQEKVLARQREQVQSLEKRFASLEAQR-QQLQAEINQRDTKIDQLDQAIAAKDNDIQAREEK.............................................. 252
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.