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Query: [U] KOG3894 SNARE protein Syntaxin 18/UFE1, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSRFRDRTEDFKDSVRNSAVSIGYNESKVASTMASFIIHKPKERSPFTKAAFKTLDSIKELELFMLKHRKDYVDLHRTTEQEKDSIEQEVAAFIKACKEQIDILINSIRNEEANSKGWLGLPADNFNADSIAHKHGVVLILSEKLHSVTAQFDQLRATRFQDIINRAMPRRKPKRVIKEATPINTTLGNSESIEPDEIQAQPRRLQQQQLLDDETQALQVELSNLLDGARQTETKMVEMSALNHLMATHVLQQAQQIEFLYDQSNDDRNLEAINASVGRLast
1 -92.400[U] KOG3894 SNARE protein Syntaxin 18/UFE1  ali  100  1MSRFRDRTEDFKDSVRNSAVSIGYNESKVASTMASFIIHKPKERSPFTKAAFKTLDSIKELELFMLKHRKDYVDLHRTTEQEKDSIEQEVAAFIKACKEQIDILINSIRNEEANSKGWLGLPADNFNADSIAHKHGVVLILSEKLHSVTAQFDQLRATRFQDIINRAMPRRKPKRVIKEATPINTTLGNSESIEPDEIQAQPRRLQQQQLLDDETQALQVELSNLLDGARQTETKMVEMSALNHLMATHVLQQAQQIEFLYDQSNDDRNLEAINASVGR 279
2 -36.600[U] KOG0812 SNARE protein SED5/Syntaxin 5  ali follow..  16  8.SSYRDRSDEFFKIVETLRRSIAPAPAANNVPYGNNRNDGARNKSEFNKRASHIGLAINQTSQKLSKLAKRIRMVLRSR-AKRTSVFDDPTQEIQELTVVIKQLNSALVDLQLFRSSQNDEGNNSRDRDKSTHSATVVDDLKYRLMDTTKEFKDVLTMRTENMKVHESRRQLFSSNASKSSSSSQLVPWKPGEGESSPLLQQSQQQQQQQQQQMVPLQDTYMQGRAEALHTVESTIHELSSIFTQLATMVSQQGEIAIRIDQNMEDTANVEGAQSQLAR 346
3 -32.400[U] COG5325 t-SNARE complex subunit, syntaxin  ali follow..  8  1.MAYRDRTGLYITFRQSYSHHGQRLELSGWDPKEERQSEMDMLAPRWVTVEGEIDSLLLNTRRNINLLDKQYAKHVLPSFSDKTEQENEIQRLTIQITQDFQRCQKLLQV--------TKAQTNSATGSEALMAKNFLSNLASRIQTESAQFRKKQSTYLKKLRGLNANISPVES----------------KLDETVSDVAISQSTIQQVALMEEQGEDEQAIRHERAVAKIAEGIIELAQMFQDLQVLVIEQGALVDRIDFNIEQTVHAKSAEKELIK 267
4 -30.200[U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17  ali follow..  11  24............................................GSRQDTTQDVASGIFQINTSVSTFHRLVNTLGTPKDTPEHKTRLYIGQLVKDTSAKLKEASETDHQRGVN-----------------QKKKIVDAKLAKDFQAVLKEFQKAQRLAAERETVYAPLVHKPSLPSSYTSSE--IDVNGDKHPEQRALLVESKRQELVLLDNEIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHIDNSYATAQGKSHLVR 245
5 -29.000[U] KOG0809 SNARE protein TLG2/Syntaxin 16  ali follow..  6  1.MATRNRTLLFRKYRNSLRSVRAPLSSSSLTGTRSKGAITVGLPPAWVDVSEEISVNIQRARTKMAELGKAHAKALMPSFGDGKEDQHNIESLTQEITFLLKKSEKQLQR------------SASGPSEDSNVRKNVQRSLATDLQLLSMELRKKQSTYLKRLRQQKEDGMDLEMN--------------LSRNRYRPEEDDFGDMLNEHQMSKIKKSEEVSVEREKEIQQVVESVNDLAQIMKDLSALVIDQGTIVDRIDYNIENVTTVEDGLKQLQK 287
6 -27.600[U] KOG0810 SNARE protein Syntaxin 1 and related proteins  ali follow..  12  1...MRDRLPDLTA------------CRKNDDGDTVVVVEKDHFMDDFFHQVEEIRNSIDKITQYVEEVKKNH-NPEGKIKEELEDLNKEIKKTANKIAAKLKAIEQSFDQ----------DESGNRTSVDLRIRRTQHSVLSRKFVEAMAEYNEAQTLFRERSKGRIQRQLEITGRTTTDDELEEML---------ESGKPSIFTSDIISDSQITRQALNEIESRHKDIMKLETSIRELHEMFMDMAMFVETQGEMINNIERNVMNADYVEHAKEETKK 252
7 -26.300[U] COG5074 t-SNARE complex subunit, syntaxin  ali follow..  11  34............................................VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQAS---HLRHSLDNFVAQATDLQFKLKNEIKSAQR---------DGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQ------PEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDALDVEQGVGHTDK 251
8 -15.800[U] KOG3202 SNARE protein TLG1/Syntaxin 6  ali follow..  13  2...........................................EDPFYEVKADASNQMEQVRKLYNSFMA-------ARNSGVLSPNTELTYAIDELSETLKDLKAAVEIAMKNSEHF------GLDEEELKSRRRFVSELDIELNNIQLKMGA--------------------APSTPVSTEPYTVDNGASAGLSEEDHAVNRQYQEQLYQQQD-----------VMLDGVYDTIGNIRGQAALMGEELGQQADLLDTLDNSIETTNSLRRGMKRLKD 194
9 -12.800[U] KOG3065 SNAP-25 (synaptosome-associated protein) component of SNARE complex  ali follow..  10  200..............................................................................................................................................................................................................................QKIDSNLDELSMGLGRLKDIALGMQTEIEEQDDILDRLTTKVDKLDNIKSTERKVRQ 257
10 -12.400[U] KOG1666 V-SNARE  ali follow..  9  1........................................................................MASSAASSEHFEKLHEIFRGLHEDLQGVPERLLGTAGTEEK-------KKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRNYRKDLAKLHREVRSTPLTATPGGRGDMKYGIYAVENEHMNRLQSQRAMLLQGTESL----NRATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKSRLVNTSELSKSRKILRS 197
11 -10.800[U] KOG3251 Golgi SNAP receptor complex member  ali follow..  11  3............................................NTLYNHCTKLFQSIQRSLDELER-----GVQDESNTISLAGIQGQISASFLSLSRSIDDYDSMVQRELVPAKKKKATIR--------------IQEFRQKHVQLLEKFDELKAHVRDIAQAKNRKELLGRRGYVNSLDSPYGNSTTDAEIVEG---------------PSDLSRQDGLLKEHDFLGRAESQVDEFLERGRMILGDLVEQGSVLKATKTKVLNAANLGITRHTLSL 204
12 -10.500[U] KOG0946 ER-Golgi vesicle-tethering protein p115  ali follow..  9  650.....NIVTHYKNMIREQDLQLEELRQQVSTQLQTAVTQQVSQIQQHKDQYNLLKIQLGKDNQHQGSYSEG-AQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSVEVQGETETIIATKTTDVEGRLSALLQETKELKNEIKALSEERTAIKEQLDSSNSTIAILQTEKDKLELEITDSKKEQDDLLVLLADQDKILSLKNKLKD 929
13 -9.830[U] KOG3385 V-SNARE  ali follow..  8  19...................................................................................................................................................................................................EEGGIRAASSYSHEINEHENE----------RALEGLQDRVILLKRLSGDINEEVDTHNRMLDRMGNDMDSSRGLSGTMDRFKT 93
14 -9.580[S] COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain  ali follow..  9  24....................................................HLGSKVGKARLRLFKLRPRQVITGTLISASTLGILFTFSKSLREGVFQLDDILAQLRVAKTELEQASQAKEEIESELTAVREE--QQLVQERSRELNRNYTKALQLLRRVSEQSRNLRQEVANLSAERAQLNEQKDSLLAESSELQSQVKLRDQELSKRQERIAQQEKVLARQREQVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQAIAAKDNIQAREEKLQG 255
15 -9.560[U] KOG0860 Synaptobrevin/VAMP-like protein  ali follow..  9  24...............................................................................................................................................................................................................................QSKSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDK---ADNLAVSAQGFKR 76
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 0 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.