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Query: [A] KOG4008 rRNA processing protein RRP7, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRYDVSSNSLYVFCSIVLFSDLRFRIGGKYMAERHMFLKKDPSKENSIIVSNIPAFVGEGVVLAIIDQFASFEVEESFVQRSNTADNSLSQGQLTMSITFDKPEAVIQTLALCQDVGPFTITDFLEDPEFPSVLKDSTTLYRKLFPSEEQIQEMADTYVERYDTEQTEARKEAKRKYSEPDEDGWITVTKAKKAAKSVKLKKEDVPLIGGLNNKKKKVDLAYYTFQIKKNRQEKAQELLKKFEEDRKRITQLKQARNFKPILast
1 -104.000[A] KOG4008 rRNA processing protein RRP7  ali  100  1MRYDVSSNSLYVFCSIVLFSDLRFRIGGKYMAERHMFLKKDPSKENSIIVSNIPAFVGEGVVLAIIDQFASFEVEESFVQRSNTADNSLSQGQLTMSITFDKPEAVIQTLALCQDVGPFTITDFLEDPEFPSVLKDSTTLYRKLFPSEEQIQEMADTYVERYDTEQTEARKEAKRKYSEPDEDGWITVTKAKKAAKSVKLKKEDVPLIGGLNNKKKKVDLAYYTFQIKKNRQEKAQELLKKFEEDRKRITQLKQARNFKPI 261
2 -15.400[A] KOG4209 Splicing factor RNPS1, SR protein superfamily  ali follow..  14  71......................................EKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQC------DRFSGHPKGFAYVEFTEKEGMQNALAM..................................................................................................................................................... 138
3 -14.800[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)  ali follow..  11  7......................................ERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLV---------PFAFVRFEDPRDAEDAIYGRN--------------------------------GYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDTKFRSHEGETSYIRVYPE.... 185
4 -14.700[R] KOG1457 RNA binding protein (contains RRM repeats)  ali follow..  12  86......................................LKTRPGVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTARQ-----------VGFVIFDSRAGAEAAKNALN................................................................................................................................................... 151
5 -14.300[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)  ali follow..  10  8......................................RLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETR---------GTAFVVYEDIFDAKNACDHLS................................................................................................................................................... 74
6 -13.800[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)  ali follow..  7  23......................................ERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVM------GLDKYKKTPCGFCFVEYYVRSEAEAAMRFVN................................................................................................................................................... 92
7 -13.700[A] KOG1190 Polypyrimidine tract-binding protein  ali follow..  9  52......................................RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN------------QAFIEMNTEEAANTMVNYYTSVT---PVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ.................... 244
8 -13.100[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B  ali follow..  9  151......................................QETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPG-----------IAFVEYEDDVQASIAMQPLQ................................................................................................................................................... 215
9 -13.000[A] KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins  ali follow..  8  1...................................MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPS----GEAFVELESEDEVKLALKK----------------------------------DRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERI--GHRYIEIFKSSRA.... 189
10 -12.800[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)  ali follow..  14  206......................................MRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAI------DQKTGVSRGFGFVNFVSREDAQRAINKLN................................................................................................................................................... 275
11 -12.700[R] KOG0118 FOG: RRM domain  ali follow..  10  166......................................QREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNS--------VLRFAFIEFTDEEGAMTALNL----------------------------------SGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVR.... 349
12 -12.600[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)  ali follow..  13  9......................................DQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQ----NPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR----AFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK-----FADTQKDKEQKRMAQQLQQ.................... 203
13 -12.500[R] KOG4454 RNA binding protein (RRM superfamily)  ali follow..  17  6......................................TPSPPEERTIYVANFSEEVDEELLEELFIQAGPVVKVILRDVRDS--------NAKFALVEFEDELSVLFAIELMN................................................................................................................................................... 73
14 -12.400[A] KOG4207 Predicted splicing factor, SR protein superfamily  ali follow..  7  7......................................PPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPL------EPHTKAPRGFAFVRFHDRSDAQDAEAAMD................................................................................................................................................... 76
15 -12.300[K] KOG1548 Transcription elongation factor TAT-SF1  ali follow..  7  103......................................SPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRKIYRTEDGTPKGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALRLRQQQMQQISSWDDVDEEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLIDLKDDITEDKEPDGVVTVRFSNNEEAEACVRLMQGRFDGRVVEASIYDGKVRFQ.. 339
16 -12.300[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)  ali follow..  8  5MATLANGQADNASLSTNGLGSSPGSAGHMNGLSH---IPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK------DRFTGMHKGCAFLTYCERESALKAQSALH--------------------------------EQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVQQSEDDVRRLFEAFGNIEECTILRGPDGNSK---AFVKYSSHAEAQAAINALHGS.................... 215
17 -12.300[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)  ali follow..  5  66......................................PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLN-------DRRTGFSKGYALVEYETHKQALAAKEALN................................................................................................................................................... 135
18 -12.200[A] KOG4212 RNA-binding protein hnRNP-M  ali follow..  8  64......................................YANPTKRYRAFITNIPFDVKWQSLKDLVKEVGEVTYVELLMDAEG-------KSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVFVANKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPHVKMDERALP.... 284
19 -12.100[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)  ali follow..  10  49......................................AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNG-------NNRGYAFVTFSNKVEAKNAIKQLNNYE----GRLLGVCASVDNCRLFVGGIPKTK-KREEILSEMKKVTEGVVDVIVYPSAADKTKNR-----GFAFVEYESHRAAAMARRKLLAEPEVEVDEDTMSSVKILYVRNLMLSTSEE--MIEKEFNNKPGAVERVKKIRDY... 268
20 -11.800[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)  ali follow..  10  3..............................................RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPG-----------YAFLDFEDSRDARDAIREVD................................................................................................................................................... 59
21 -11.700[A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)  ali follow..  13  39......................................ATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR------DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK-TMTQKELEQLFSQY---------------------GRIITSR-------------------VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANN.... 212
22 -11.700[A] KOG0131 Splicing factor 3b, subunit 4  ali follow..  10  18......................................SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPK------DRVTNLHQNYGFIEYRSEEDADYAIKVLNMIK----------------LHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKL-----LYDTFSAFGVIA----------------SNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQTVSYAYKKDT.... 194
23 -11.700[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19  ali follow..  4  56......................................GSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMT------NKVTGRSRGYGFVNFISEDSANSAISAMN................................................................................................................................................... 125
24 -11.600[R] KOG1995 Conserved Zn-finger protein  ali follow..  8  274.......................................DDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKKIYTDEKGNYKGDACLAYEDPSAAHSAGG-----------------------------FNNYEMRGNKISVTMAEKSAPRAPTFDQSFIILVGNMSFCNAKFMFLVSEDCLDLVSYWGFALYTHLGMTERMSVSDLIMLSLQYGGGDRRRDNYSS-RNHHGGNRKLIFNCKMHCKL... 491
25 -11.400[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15  ali follow..  19  3.........................................MTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKL------VLDPETGSGKGYGFCEFFDSETTAMAVRKLN................................................................................................................................................... 69
26 -11.400[R] KOG0110 RNA-binding protein (RRM superfamily)  ali follow..  9  545......................................PAKKRSNTVILAKNLPAATEISEITPIFSRFGPIGRIVL-------------PSGVTALIEYCDPLEARQAFKKLAYSKFKNAPLYLEWAPEQVFTKTLSGEPVIPKSEPKPKEEVKPEEKPIVNDAKPDEEDSRAEDADDEPEPNTTLFLRN-RHLGSIHTVEIAKRRDPENPREFKSLGYGFIQFKKSSVAEHALKNLQLTHIDGNP.............. 754
27 -11.300[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)  ali follow..  10  122......................................QRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKG------FAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRI------YVASVHQDLSDD-----DIKSVFEAFGKIKSCT------------------ARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYRVGKAVTPPM.... 307
28 -11.200[AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)  ali follow..  12  2........................................EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG--------NDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGY-----------------------------------GFVSFFNKWDAENAIQQMGGQWLGGRQRTNWATRKPP.... 176
29 -11.200[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)  ali follow..  8  4......................................AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMIT------RRSLGYAYVNFQQPADAERALDTMNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN-KALYDTFSAFGNILSCKVVCDENGSKG--------AFVHFETQEAADKAIEK-FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE--SLKELFSQ---KTLSVKVMR..... 224
30 -11.100[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)  ali follow..  12  586......................................APGTEDARTIFVSNLDFTTTEDEIRQAIEGVASIRFARKANSDL--------VHRGFAYVVMENDQKAQQALLKDRVPVKGRPMFISANDPEKRVGFKFSTTLEKSKVFVRNVDDELKALFSKFGTVTSVRRVTHKDGKPK----GIAFVDPVKKDKSHGKPAAIGASLEEDGPRKGHAAKLQLVPRAITNKTPQITARLDAMDVSEGTSTSQPLSNDQFR.. 830
31 -11.100[A] KOG0120 Splicing factor U2AF, large subunit (RRM superfamily)  ali follow..  10  203.........................................PDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKG------YAFCEYVDLSITDQSIAGLNDKKLIVQRASVGAKNAQNAANTTQSVMLQVPGLSNVVTSGPPTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTKYGV--------RSVEIPRPIEGVEVPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYH.. 412
32 -11.100[R] COG0724 RNA-binding proteins (RRM domain)  ali follow..  11  184......................................SRERDDMCTLKIMQVNENADENSLRELLFPFAPIPRVSVVR------NKETGKSRGLAFVTFSSEEVAEQALRFLD................................................................................................................................................... 254
33 -10.900[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)  ali follow..  5  4...............................................VYIGRLPNRASDRDVEHFFRGYGKLSDVIMKN--------------GFGFVDFQDQRDADDAVHDLN................................................................................................................................................... 56
34 -10.700[R] KOG4733 FOG: RRM domain  ali follow..  7  55......................................GWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAIL------DKTTNKCKGYGFVDFDSPAAAQKAVSALKASG---VQAQMAKQQEQDPTNLYISNL-----PLSMDEQELENMLKPFGQVISTR---------LRDSSG-------------------------------TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCK.. 222
35 -10.400[R] KOG0226 RNA-binding proteins  ali follow..  8  195.....................................LAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVR------ESRTNKSKGYGFVSFRDSEDYVRAMREMD................................................................................................................................................... 265
36 -10.400[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)  ali follow..  11  109......................................KKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK-------------GFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHGAAI--RVKELSPTVSN-EMLYHAFSHF-------------DVERAVHIVDEKG-------------------------------RPTGEGIVEFERKPNCNEAMAAIRDKLTASPKPLICEVLEPR.... 271
37 -10.300[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)  ali follow..  16  105......................................SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--------SKGFGFVTFENSADADRAREKLH................................................................................................................................................... 172
38 -10.200[K] KOG4210 Nuclear localization sequence binding protein  ali follow..  10  232......................................MSKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDS-------KCKGFAFIDFKNEEGSTNELKDKS................................................................................................................................................... 301
39 -10.100[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)  ali follow..  10  142.....................................LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIS------DRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRL------YVGSLHFNITED-----MLRGIFEPFGKIDNIV------------------MKDSDTGRSKGYGFITFSDSECARRALEQL-NGFELAGRPMRVGHVTER.... 326
40 -9.960[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)  ali follow..  12  1.......................MAYQPVPGSGFH---PFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIA------DKNTGRSKGYGFVTFRDPEAARRACA...................................................................................................................................................... 83
41 -9.910[A] KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1  ali follow..  10  1.....................MTTTVSTGATAVATLRETSPPVDGHEMFIGGLSWQTTAENLRDYFGRFGEVNECMVM------RDPATKRARGFGFITFVDPSSVDKVLNNRKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHR-------GFVTFDSDEVADKVCEIHFHEINGKMVECKKA.............................................. 209
42 -9.870[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)  ali follow..  10  29......................................HSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVR------DKKTGKSKGFCFLCYEDQRSTILAVDNFN................................................................................................................................................... 98
43 -9.810[K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)  ali follow..  11  43......................................ASKADNRGVCYLSRIPPHMDHVRLRHILAQYGELGRIYLAPEADTRAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGENIKYLTKFKWDDLTEEIAYKSAIREQKLNMVLSAAKREKDFYLSKIEKSRAMTEARMEKKRKIQEESGSNAEAAPVFPPRAIFQFRQKKSIENETSQSKPGLSTDFLA..................................... 260
44 -9.790[AR] KOG1365 RNA-binding protein Fusilli, contains RRM domain  ali follow..  7  171.......................................GADGDNVVCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSE-------RRNGEVLVQFSSQESRDLALKRHRNF-----------------------------------SRYIEVYKAGLDEFMHVATGSSTEAMEFVSANAIIVRMRGLPYDCTDAQIRTTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFKSTAAE..... 355
45 -9.480[J] KOG0129 Predicted RNA-binding protein (RRM superfamily)  ali follow..  9  448......................................ERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAES----KSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQ--LSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLDTDPEGAGRVA-------------------SNQQSYIAAISARFVQLQHGEIDKR--VEVKPYVLDDQDECQGARCGGKFAPF 665
46 -9.310[T] KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains  ali follow..  16  270......................................IDQQAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYR------LKGNCFGFVTFASAEAVKLVLQAHKES................................................................................................................................................. 341
47 -9.300[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)  ali follow..  12  223......................................PPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIALVPRQQ------------CAFVQYTKRNAAELAAERTFN.................................................................................................................................................. 287
48 -9.250[R] KOG4208 Nucleolar RNA-binding protein NIFK  ali follow..  3  3.........................................AFSRSAGPILSLNP-QEDAELQKEVAQCDTVTRFRLSR------KKRTGNSKGYAFVEFESEDVAKIVTETMN................................................................................................................................................... 68
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;