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Query: [TR] KOG4019 Calcineurin-mediated signaling pathway inhibitor DSCR1, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEEVDLQDLPSATIACHLDPRVFVDGLCRAKFESLFRTYDKDITFQYFKSFKRVRINFSNPFSAADARLQLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKQFLISPPASPPVGWKQVEDATPVINYDLLYAISKLGPGEKYELHAATDTTPSVVVHVCESDQEKEEEEEMERMRRPKPKIIQTRRPEYTPIHLSLast
1 -98.600[TR] KOG4019 Calcineurin-mediated signaling pathway inhibitor DSCR1  ali  100  1MEEVDLQDLPSATIACHLDPRVFVDGLCRAKFESLFRTYDKDITFQYFKSFKRVRINFSNPFSAADARLQLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKQFLISPPASPPVGWKQVEDATPVINYDLLYAISKLGPGEKYELHAATDTTPSVVVHVCESDQEKEEEEEMERMRRPKPKIIQTRRPEYTPIHLS 197
2 -29.300[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B  ali follow..  11  2..LTADIPPNQSIYIQNLNER-IKKEELKRSLYCLFSQFGRILDVVALKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKD---QEEKVERKREDSQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMM.......................... 173
3 -27.800[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)  ali follow..  10  10.....PPEVNRLLYVRNLPYKITSDE-----MYDIFGKFGAIRQIRV-ETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRV-ELNNIKAKYNLKTPEAP.................................................................................... 121
4 -24.500[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)  ali follow..  8  21.EQERSLRDSCTLYVGNLSFYTTE-----EQIHELFSRCGDVRVIVMGTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGRQY...................................................................................................... 115
5 -22.400[A] KOG1190 Polypyrimidine tract-binding protein  ali follow..  10  50.DSRSAGVPSRVIHIRKLPIDVTEGE-----VISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPRGQPIYIQFSNHKELKTDSSP.................................................................................................... 142
6 -22.300[R] KOG4208 Nucleolar RNA-binding protein NIFK  ali follow..  13  2.....AAFSRSAGPILSLN------PQEDAELQKEVAQCDTVTRFRLSNSKGYAFVEFESEDVAKIVTETMNSYLFGERLLECHFMPPEKKMES....................................................................................................... 90
7 -22.300[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)  ali follow..  9  67....QRSVEGWILFVTSIHEEAQEDE-----IQEKFCDYGEIKNIHLNFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVK...................................................................................................... 158
8 -22.000[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)  ali follow..  11  207....RRRNDENSVRVTNLSEDTREPD-----LMELFHPFGAVTRVYVAISRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRPT.......................................................................................................... 294
9 -21.100[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19  ali follow..  14  57....SLRYMSTKLYIGGLSPGTDE-----HSLKDAFSSFNGVTEARVMRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLPL....................................................................................................... 147
10 -21.000[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)  ali follow..  13  5.ADERGGEGDGRIYVGNLPTDVREKD-----LEDLFYKYGRIREIELKNLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGP.............................................................................................. 104
11 -20.900[A] KOG4207 Predicted splicing factor, SR protein superfamily  ali follow..  13  5.RPPPDVDGMITLKVDNLTYRTSPDS-----LRRVFEKYGRVGDVYIPAPRGFAFVRFHDRSDAQDAEAAMDGAVLDERELRVRMARYGRRDL........................................................................................................ 97
12 -20.400[R] COG0724 RNA-binding proteins (RRM domain)  ali follow..  10  185....RERDDMCTLKIMQVNEN-ADENSLREEL---LFPFAPIPRVSVVKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPKVKE......................................................................................................... 274
13 -20.100[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)  ali follow..  7  224....PEDRNITTLYVGNLPEEITE-----PELRDQFYQFGEIRSIALVPRQQCAFVQYTKRNAAELAAERTNKLVIQGRKVSIKWAHSQAKQGTAAKTDRRFDLAGIPPPSAKPNDYFNLRQEQINVMPAGMKLHQLPSNLVPASAYQMYGQPTYAAPYGNATSTALSSSGVNLDSISIPPPPGQVPYPSQDASRMG 412
14 -20.000[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)  ali follow..  8  26VSWHSEYKDSAWIFLGGLPYELTEGD-----IICVFSQYGEIVNINLVKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPK........................................................................................................ 119
15 -20.000[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)  ali follow..  18  2..........SRVYVGNLDPRVTERE-----LEDEFRSFGVIRSVWVARR-GYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRGGGGGRGGG....................................................................................................... 81
16 -19.700[R] KOG4454 RNA binding protein (RRM superfamily)  ali follow..  8  4.KPTPSPPEERTIYVANFSEEVDE-----ELLEELFIQAGPVVKVILRDVRDSALVEFEDELSVLFAIELMNGVRLFNQELQVKPRNGTNQEELY...................................................................................................... 96
17 -19.400[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)  ali follow..  19  2..........VRVYIGRLPNRASDRD-----VEHFFRGYGKLSDVIMKNGFG--FVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGYNEERSGSGFRGR............................................................................................. 88
18 -19.400[AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)  ali follow..  12  197....QSSPSNCTVYCGGVTSGLTE-----QLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQ.................................................................................................... 284
19 -18.900[R] KOG0110 RNA-binding protein (RRM superfamily)  ali follow..  12  543.DEPAKKRSNTVILAKNLPAATEISE-----ITPIFSRFGPIGRIVLPPSGVTALIEYCDPLEARQAFKKLAYSKFKNAPLYLEWAPEQVFTKTLSGEPVIPKS-------------EPKPKEEVKPEEKPIVNDAKPDEEDSRAEDADDEPEPNTTLFLRNLNFKTVQET.......................... 694
20 -18.800[A] KOG4209 Splicing factor RNPS1, SR protein superfamily  ali follow..  11  69.PEEKAEADAKSVYVGNVDYGA-----TAEEIEQHFHGCGSVSRVTIQHPKGFAYVEFTEKEGMQNAL-AMTDSLLRGRQIKVDPKRTNKPGMS....................................................................................................... 161
21 -18.600[A] KOG4212 RNA-binding protein hnRNP-M  ali follow..  11  644.HAPGVARKACQIFVRNLPFDFTW-----KMLKDKFNECGHVLYADIKKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA............................................................................................................ 730
22 -18.100[R] KOG0226 RNA-binding proteins  ali follow..  11  194.SLAEWDENDFRVFCGDLGNEVSD-----ELLAKAFRKYPSFQKAKVVKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKERNIDVIKQKRKQKK............................................................................................. 297
23 -17.400[A] KOG0120 Splicing factor U2AF, large subunit (RRM superfamily)  ali follow..  13  199..STVVPDSPHKIFIGGLPNYLNDDQ-----VKELLLSFGKLRAFNLVKSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAA.................................................................................................... 294
24 -17.200[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15  ali follow..  11  2.....SMTAGNVVFVGNIPYDVSEQQ-----MTEIFNQVGPVKTFKLVSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRRNQ....................................................................................................... 91
25 -17.200[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)  ali follow..  12  388.GSQKEGPEGANLFIYHLPQEFGDQD-----LLQMFMPFGNVVSAKVFISKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY...................................................................................................... 482
26 -17.100[A] KOG1996 mRNA splicing factor  ali follow..  18  300.LTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQ.................................................................................................. 404
27 -17.100[A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)  ali follow..  12  291....GHTGTGWCIFVYNLSPDSDE-----SVLWQLFGPFGAVNNVKVIRCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS........................................................................................................ 380
28 -17.000[R] KOG1457 RNA binding protein (contains RRM repeats)  ali follow..  13  84.HELKTRPGVRTLFVSGLPVDIKP-----RELYLLFRPFKGYEGSLIKLTARQGFVIFDSRAGAEAAKNALNGIRFDPENLRLEFAKANTKMAKS...................................................................................................... 177
29 -17.000[K] KOG1548 Transcription elongation factor TAT-SF1  ali follow..  8  240.DDKRKKRFNKIVVLKHILEELDKTPDLKDDITEEAEKCGRVTNVVLYDK-GVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTLDDEE............................................................................................. 350
30 -17.000[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)  ali follow..  16  103.ENSESKSTPKRLHVSNIPFRFRDPD-----LRQMFGQFGKILDVEIIGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANG.............................................................................................. 203
31 -16.800[R] KOG0118 FOG: RRM domain  ali follow..  13  164.MAQREDVIRRTVYVSDLDQQVTEEQ-----LAGLFVSCGQVVDCRICSVLRFAFIEFTDEEGAMTALN-LSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDE............................................................................................. 264
32 -16.700[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)  ali follow..  10  677....STTLEKSKVFVRNVHFQATD-----DELKALFSKFGTVTSVRRVKPKGIAFVDFDTEASAQKCVASGDKLMLRERELEVALSNPPVKKDKSHGKPAAIGA---LEEDGPRKGHAAKLQLVPRAITNKTPQITARLDAMDVSEGTSTSQPLS.......................................... 825
33 -16.700[K] KOG4210 Nuclear localization sequence binding protein  ali follow..  10  233....SKNPPSRILFVGNLSFDVTDDL-----LRKHFQHCGDIVKIRMAKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRN............................................................................................. 333
34 -16.100[A] KOG0533 RRM motif-containing protein  ali follow..  15  68....GNDSKVIRVNISNLAPTVISSD-----LEELFGDYR-LSSVSV-DSLGTGDISLTK-RDAERLVQKFSGVALDGKIMKFAVIDSSNMAGR....................................................................................................... 155
35 -16.000[A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)  ali follow..  7  93.IKNATEDPFRTLFIARINYDTSESK-----LRREFEFYGPIKKIVLIKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKG........................................................................................................ 185
36 -16.000[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)  ali follow..  14  217.QLAEEARAFNRIYVASVHQDLSDDD-----IKSVFEAFGKIKSCTLAKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP.................................................................................................. 315
37 -15.700[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins  ali follow..  9  43.........SPTLLLSNMRKIQEHFEDFFEDLFEELGKFGEIESLNICDNIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTD........................................................................................................... 148
38 -15.600[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)  ali follow..  14  1MNAAASSYPMASLYVGDLHSDVTE-----AMLYEKFSPAGPVLSIRVCRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRK....................................................................................................... 95
39 -15.600[K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)  ali follow..  11  41.KEASKADNRGVCYLSRIPPHMDH-----VRLRHILAQYGELGRIYLAPRFSEGWVEFAKKSVAKRVADMLNGEQIGGKKKSSVY................................................................................................................ 146
40 -15.100[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)  ali follow..  17  238.NLQKGNGGPMRLYVGSLHFNITE-----DMLRGIFEPFGKIDNIVLMRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQE............................................................................................. 341
41 -14.600[K] KOG2068 MOT2 transcription factor  ali follow..  17  107........QRNLVYIVGLPLNLADEDLLQR--KEYFGQYGKVLKVSMSRTAT-VYITYGKEEEAIRCIQSVHGFILDGKALKACFGTTK............................................................................................................ 196
42 -14.000[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)  ali follow..  10  48....MKDHDAIKLFIGQIPRNLDEKD-----LKPLFEEFGKIYELTVLMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPP............................................................................................. 148
43 -13.500[A] KOG0131 Splicing factor 3b, subunit 4  ali follow..  11  103.QDKKSLDVGANLFIGNLDPDVDE-----KLLYDTFSAFGVIASNPKINSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKS................................................................................... 217
44 -13.500[R] KOG0151 Predicted splicing regulator, contains RRM, SWAP and RPR domains  ali follow..  12  165....DGDPQTTNLYVVNLSSKVDE-----NFLLRTFGRFGPIASVKIMRERHCGFVAFMNRADGEAAKEKMQGIIVYEYELKIGWGKVVFLPSQALPAPPPGHMAIRSKEGCN.................................................................................... 277
45 -13.300[D] KOG2186 Cell growth-regulating nucleolar protein  ali follow..  9  399.ESADRDIAQRNIFVRGFGWDTTQ-----ENLKTAFESYGEIEECSVVRGKGYGFVMFKTRKGAREALKRPEK-RMYNRIVVCNLASEKPGKAG....................................................................................................... 491
46 -13.100[A] KOG4676 Splicing factor, arginine/serine-rich  ali follow..  16  24.GGGGGGGGTEVIQVTNVSPSA-----SSEQMRTLFGFLGKIDELRLFPSSRVCFVKFHDPDSAVVAQ-HLTNTVFVDRALIVVPYAEGVIPDE....................................................................................................... 118
47 -13.100[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)  ali follow..  12  108..PKKKFTGRCRLFVGNLPNEVKETE-----LKELFSPHGDIAECYLSGK-GFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHGAASNEMLY--DVERAVHIVDEKGRPTGEGIVE----ERKPNCNEAMAAIRDKV------LTASPKPLICEVLEPRDEDDGLAERMIPRTPGLSKERELGP........ 296
48 -12.800[R] KOG1995 Conserved Zn-finger protein  ali follow..  11  274....DDNCDNARIYISNLPPDV-----TTDELKDLFGGIGQVGRIKQ-NYKGDACLAYEDPSAAHSAGGFFNNYEMRGNKISVTMAEKSAPRAPTFDQSFIILVGNMSFCNAKFM.................................................................................. 398
49 -12.500[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)  ali follow..  15  50....APPERGCEIFIGKLPRDLFEDE-----LIPLCEKIGKIYEMRMMNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCR......................................................................................................... 137
50 -12.500[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)  ali follow..  10  14LNSPFGDTTFTKVFVGGLAWETQS-----ETLRQHFEQYGEILEAVVIRSKGYGFVTFRDPEAARRACAD-PTPIIDGRRANCNLASLGRPRPP....................................................................................................... 107
51 -12.400[R] KOG4733 FOG: RRM domain  ali follow..  11  53.NSGWDQLSKTNLYIRGLPPHTTD-----QDLVKLCQPYGKIVSTKAIKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELILRDSSGTSRGVGFARMESTEKCEAVIGHFN............................................................. 202
52 -11.800[D] KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins  ali follow..  13  176.EHPNGEHPSRTLFVRNINSSVED-----SELSALFEPFGEIRSLYTAKSRGFVMISYYDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEK---DMNQGTLVIF--------------DTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKL.............. 338
53 -11.500[R] KOG2135 Proteins containing the RNA recognition motif  ali follow..  11  360....AINRDNCTLQVAKIPPEMNT----IAKLNEHFATFGTVDNIQV-GEIDSALVTYASKFDAGKAYKS-PTPVLNNRFIKVFWHNPGGEGSENATGKPSSPTSPPKPVEKPKIA-IQDAKERLTKEKSILSTLVQAQNQHNIILDKWMVKQKELLIKARTSTDETDKKNATKLVKHLHKKIKACK.......... 556
54 -11.400[A] KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins  ali follow..  5  1MMLGTEGGEGFVVKVRGLPWSCSADE-----VQRFFSDCKIQNGAQGIRPSGEAFVELESEDEVKLALKK-DRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPD............................................................................................. 106
55 -11.300[J] KOG2314 Translation initiation factor 3, subunit b (eIF-3b)  ali follow..  10  48.QSEFDTGFGNIIVVDHLPVPKEKFEKLEGVVKKIYNQLGVIKENGL-MTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSHI.................................................................................................................... 136
56 -11.100[S] KOG4176 Uncharacterized conserved protein  ali follow..  5  36.....SAEPTPYLAVLNV--------TEECLLTEAAATGGKVIQVVMLPGKSYCFFICASLEDSQLIYEGMHNIST......................................................................................................................... 104
57 -10.900[AR] KOG1365 RNA-binding protein Fusilli, contains RRM domain  ali follow..  16  168.QEVGADGDNVVCRARGLPWQASDHH-----VAQFFAGLDIVPGGIALRRNGEVLVQFSSQESRDLALK-RHRNFLLSRYIEVYKAGLDE........................................................................................................... 256
58 -10.100[R] KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains  ali follow..  7  359......MTPCDTLLIRGLPDGINN-----SLIFDSLGALVCLSSISMIKSKRFAYLQMKSADEAKMLLNLTYKSPIKDKDVQVSWCRDS............................................................................................................ 441
59 -9.630[A] KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1  ali follow..  12  36.DGSHGSQDPGKMFIGGLSWQTTAEN-----LRDYFGRFGEVNECMVMRARGFGFITFVDPSSVDKVLNN-REHELDGKKIDPKVAFPKRTQAKLVT--KTKKVFI........................................................................................... 138
60 -9.460[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)  ali follow..  19  397.EEKGRSSCGRNFWVSGLSSTTRATD-----LKNLFSKYGKVVGAKVVGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVGKK....................................................................................................... 490
61 -9.360[AR] KOG0109 RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains  ali follow..  13  293.PLPPRGACPDDEAVHQKPAPGGHR----AGDPLSFQAVGKVLECDIIKNYG--FVHIEDKTAAEDTIHNLHHYKLHGVNINVEASKNKSKASTKL..................................................................................................... 381
62 -9.120[R] KOG2891 Surface glycoprotein  ali follow..  13  136MDEMKAGERPDTIHISHLPMRWFNVKPSENIFKRIFEKFGRVVDIPICDPYRKGYVQFEEYSSFVRAMDEFRGNKLVRKNICVSFDKQKHLSDSNIQRRERIRKKFIAKAKAEDEEREKLKKQQEEELDRERQKQEELKKAEAEKQREREERRKE---KHMKKIQERGQVEISQKIRIEERKLMIAQR......... 360
63 -9.100[T] KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains  ali follow..  6  268.ATIDQQAEGYTIFVANLLMDA-----TPEQLNETFKGFGAITKDGIQKGNCFGFVTFASAEAVKLVLQAESAIRIGNRRVSIEEKRGNN........................................................................................................... 359
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;