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Query: [S] KOG4147 Uncharacterized conserved protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAPGEVTITVRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVFLKQDIPLRTNLPPPFRNYKYDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYKANPISSWLast
1 -99.100[S] KOG4147 Uncharacterized conserved protein  ali  100  1MAPGEVTITVRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVFLKQDIPLRTNLPPPFRNYKYDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYKANPISSW 126
2 -7.370[DO] KOG0005 Ubiquitin-like protein  ali follow..  12  5....................VKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQM------------------------NDEKTAADYKILGGSVLHL................. 69
3 -7.210[O] COG5272 Ubiquitin  ali follow..  16  5....................VKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQL------------------------EDGRTLSDYNIQKESTLHL................. 69
4 -7.020[J] KOG0004 Ubiquitin/40S ribosomal protein S27a fusion  ali follow..  16  5....................VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL------------------------EDGRTLSDYNIQKESTLHL................. 69
5 -6.590[J] KOG0003 Ubiquitin/60s ribosomal protein L40 fusion  ali follow..  16  5....................VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL------------------------EDGRTLSDYNIQKESTLHL................. 69
6 -6.570[L] KOG0011 Nucleotide excision repair factor NEF2, RAD23 component  ali follow..  16  1.......MAVTILKTLQQQTFK-----RMEPDETVKVLKEKIEAEKGRD--------AFPVAGQKLIYAGK-----------------ILSDDVPIRDYRIDEKNFVVVM................ 75
7 -6.390[C] COG0584 Glycerophosphoryl diester phosphodiesterase  ali follow..  14  28AGADGIELDVQLTKD------RIVVIHDERLNRTVKDTAYDEVKTANAAAGHDQAYSDIKVPLLEDVLSWAVKKDFLINIELKNSEGMEEKVLEAVKRFNVEDRVILSTFNHDSLALCAR...... 152
8 -5.980[Y] KOG2086 Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion  ali follow..  17  293.SEPTTNIQIRLADG-------GRLVQKFNHSHRISDIRLFIVDARP------------------------AMAATSFILMTTFPNKELADESQTLKEANLLNAVIV................... 367
9 -5.710[S] COG4541 Predicted membrane protein  ali follow..  9  1MIDTATLLTI-AGVTYLTRIGGYVMLRNRVLSARATAVMEAAPGCVLISVIAPAFVSRNPADLLALAITFVVATRLSMLPTV............................................ 84
10 -5.670[L] KOG0012 DNA damage inducible protein  ali follow..  19  3.......ITVTTSDD-------KVFCLDVAQDLELENLKALCAMEI-----------GAEVSQIAVIF----------------NGRELSSDKQTLQQCGVGDGDFIMLERRRS............ 75
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.