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Query: [O] KOG4275 Predicted E3 ubiquitin ligase, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPCESCGVEFTVFRRKRACFDCKRYYCANCIASRRCKRCSVFAQRPLSRTDLLKLKPKDLIFYLQSKHISTEGCLEKEELVGLVLTHVAQVDRSRGSNASSNSPGRGQANPIDSLKQSCQNFFSNLSDNISDSLASFDSKVTTKPPESRQPEVPTHIFEQPRVSTREIPTYASAVNGGPQHVHVQQQATTTNGGSQSSSSPSTSTQSSNNRDASSSSQAHVAHQEARNEEQEDAQSKSDCECSDEEIMATFSERVSISLKTDTSGRRVNAAAEPSPVDLANVDNGPAGNTAPSPGCSKPGSSSSKADASSQSSFEELGAIGGISDESKANTDTNSSHLDQWQVLEVNRIEAVEETPTTSAADEILEVTLRSRPAVEGDDSEMGESTQALNVNQRPANPSPAFYPAVPQRTKKVTRRRSDGYLNRRYHSSDDESPVAPGGPGLSLGLSTLSEHPEHGLHPHSHRQSCQRCGKNKTNIRRHVEKMRRHLENSQMSEEDIKRELQEFLTYLEQRTKSVDASDADSHAVSPLSVDAISVAAGGRSPDMPITPTIEFSPTQDEDIRWDDDEGIHVYAAPSDFEPTAGIDSRFVNLEDFEDLKDLEGLTVKQLKEVLMLHRVDYKGCCEKQELLDRVSRLWKTMRECPAVEKLATDELCKICMDAPIECVFLECGHMATCTSCGKVLNECPICRQYIVRVVRFFRALast
1 -167.000[O] KOG4275 Predicted E3 ubiquitin ligase  ali  100  1MPCESCGVEFTVFRRKRACFDCKRYYCANCIASRRCKRCSVFAQRPLSRTDLLKLKPKDLIFYLQSKHISTEGCLEKEELVGLVLTHVAQVDRSRGSNASSNSPGRGQANPIDSLKQSCQNFFSNLSDNISDSLASFDSKVTTKPPESRQPEVPTHIFEQPRVSTREIPTYASAVNGGPQHVHVQQQATTTNGGSQSSSSPSTSTQSSNNRDASSSSQAHVAHQEARNEEQEDAQSKSDCECSDEEIMATFSERVSISLKTDTSGRRVNAAAEPSPVDLANVDNGPAGNTAPSPGCSKPGSSSSKADASSQSSFEELGAIGGISDESKANTDTNSSHLDQWQVLEVNRIEAVEETPTTSAADEILEVTLRSRPAVEGDDSEMGESTQALNVNQRPANPSPAFYPAVPQRTKKVTRRRSDGYLNRRYHSSDDESPVAPGGPGLSLGLSTLSEHPEHGLHPHSHRQSCQRCGKNKTNIRRHVEKMRRHLENSQMSEEDIKRELQEFLTYLEQRTKSVDASDADSHAVSPLSVDAISVAAGGRSPDMPITPTIEFSPTQDEDIRWDDDEGIHVYAAPSDFEPTAGIDSRFVNLEDFEDLKDLEGLTVKQLKEVLMLHRVDYKGCCEKQELLDRVSRLWKTMRECPAVEKLATDELCKICMDAPIECVFLECGHMATCTSCGKVLNECPICRQYIVRVVRFFRA 700
2 -42.400[O] KOG1571 Predicted E3 ubiquitin ligase  ali follow..  25  239.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ISAILVAFIAKKLYRKRKQEREEAKIRERLDTERRERRARSRPHTLSQDQLCVVCSTNPKEIILLPCGHVCLCEDCAQKISTCPVCRGSIVSKAAAFIA 338
3 -38.400[DR] KOG1101 Apoptosis inhibitor IAP1 and related BIR domain proteins  ali follow..  12  117...................................................................................................................................................................................................................................................................................VSASLGSTSKNTSPMRNSFAHSLSPTLEHSSLFSGSYSSLSPNPLNSRAVEDISSSRTNPYSYAMSTEEARFLTYHMWPLTFLSPSELARAGFYYIGPGDRVACFACGGKLSNWEPKDDAMSEHRRHFPNCPFLENSLETLRFSISNLSMQTHAARMRTFMYWPSSVPVQPEQLAS-AGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTSDTTGEENADPPIIHFGPGESSSEDAVMMNTPVVKSALEMRMALFQQLTCVLPILDNLLKANVINKQEHDIIKQKTQIPLQARELIDTILVKGNAYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 618
4 -36.900[O] KOG4265 Predicted E3 ubiquitin ligase  ali follow..  21  213..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VTGHAHVLLAAFEKHMDGSFSVKPLKQKQENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLNNCPICRLFPGPPADPGGA 329
5 -35.200[O] KOG1100 Predicted E3 ubiquitin ligase  ali follow..  19  257..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NDEGDSEEERWKLAGEAQDTKKMCRVGMSMCRSCGKGEASVLLLPCRHMCLCSVCGSSLNTCPICKSPKTASLHVNLS 334
6 -26.100[O] KOG0823 Predicted E3 ubiquitin ligase  ali follow..  20  92....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NKTYLIAKALNMEKTSSVPGGFFDCNICLEKAEDPILTCCGHL--CWGC-LNIKECPVCDGEVTEVIPIY.. 169
7 -25.400[O] KOG4692 Predicted E3 ubiquitin ligase  ali follow..  18  421..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ADPPILKFALNDFPSHVSSEEIDNVRRLIDSLRVKQTLLSDITLPSEDSLCPICCAKPITAVFTPCKHQ-SCSDCIMQHKVCFYCKTTIQTIETLDGT 521
8 -24.600[O] KOG0978 E3 ubiquitin ligase involved in syntaxin degradation  ali follow..  19  770............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EFRWLKSAVSSSEKEYEQISRRTDDIKLELDDEREKKKLEEELMELNKELEEQEEVKNCKNILKCGVCFDRPKEVVIVKCYHL--CQQCIQR-RKCPGCGTAFNDVRLVKM. 899
9 -24.400[O] KOG0320 Predicted E3 ubiquitin ligase  ali follow..  26  242....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LDVASPPKRVNRDIDESQKEELYKCPICMDSKREPVSTKCGHV--CREC-RATHKCPICNKKLRQFFRIYL. 319
10 -23.000[T] COG5432 RING-finger-containing E3 ubiquitin ligase  ali follow..  27  17.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PSLYQLDTLLRCHICKDFLKVPVLTPCGH---CSLCIRT-PNCPLCLFEVSEIIQSYTS 89
11 -23.000[L] KOG0287 Postreplication repair protein RAD18  ali follow..  27  17.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PSLYQLDTLLRCHICKDFLKVPVLTPCGH---CSLCIRT-PNCPLCLFEVSEIIQSYTS 89
12 -22.800[O] KOG4172 Predicted E3 ubiquitin ligase  ali follow..  37  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NGAQEVNEGDECTICMDAPVNSVLYTCGHMCMCFECGRRLLTCPICRAPVQDVIKTYKS 63
13 -22.500[R] KOG1819 FYVE finger-containing proteins  ali follow..  21  572..CTACSMPFNFVRRRHHCRNCGRIFCHKCSCNVVSSPQSNLSLLTRQDQFSCNLLHQS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 641
14 -21.700[O] KOG0317 Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein  ali follow..  15  236..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TNDSITRSSVGLQERSEHESIEGIPKESQLTHINLSDKNQLPFIPEASRKCILCLMNMSDPSCAPCGHL--CWSCLMS-PECPLCRQHCQEILVLRQ. 337
15 -21.600[O] KOG0824 Predicted E3 ubiquitin ligase  ali follow..  25  2......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NASTSSPSQQLQQAINSTIDKECAVCYSEMILPTTIPCGHK--CFICLKGVGDCPICRGPIDS....... 69
16 -21.300[R] COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers  ali follow..  15  225...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DSVQEKYKKGAKLEEGMVKNEKKEDIPFVCLICKKDYRSPIATTCGHH--CEQCAIT-PTCIQCGADTKGLFS.... 300
17 -21.200[O] KOG0826 Predicted E3 ubiquitin ligase involved in peroxisome organization  ali follow..  16  214..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KVGGTLINPEAMPRKQLPKEVQQSLPQRGECPVCLLSIQTTACSVSGYV--CWKCMKEHGTCPVTHYPISDLVRIYET 297
18 -21.100[O] KOG1645 RING-finger-containing E3 ubiquitin ligase  ali follow..  4  5........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RSYPFSGHGGTIARFIEFGEAFGHYGEEEDEEEEDEEEAYVDYGEVQEEDEEEEEEEDSERQTREYIDVLDSPVRVSQNESEGIENQNRRMSNGNKVTLRDCLVLSVGPAVANTKSGIL-VFPDIPASTSGFSSDEVEGSDVRKIYAS 164
19 -21.000[O] COG5243 HRD ubiquitin ligase complex, ER membrane component  ali follow..  20  300...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LKDVVWDILALYQSGTSLWKIWRNNKQLDDTLVTVTVEQLQNSANDDNICIICMDENKKPKRLPCGHILSCLK--ERSQTCPICRLPVFD....... 405
20 -20.900[O] KOG1813 Predicted E3 ubiquitin ligase  ali follow..  18  247..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RKRNKAMGVEDEDDEADKDSDEDENALPFACFICREPFVDPVVTKCKHY--CEHCALK-KKCFVCNQPTMGIFNA... 324
21 -20.100[O] KOG3800 Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor  ali follow..  25  1..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KECKKCKSNQLVMMINECGHPL-CKNCVDNIGNCHVCNRVLRK....... 52
22 -20.000[O] KOG0802 E3 ubiquitin ligase  ali follow..  19  315...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FLNIRALLSAILKRIKGYIKLRIALGALHAALPDATSEE----RAYDDECAICREPMAKAKRLHCNHLLGCLR-LNEVYSCPTCRKPL......... 406
23 -19.900[O] COG5540 RING-finger-containing ubiquitin ligase  ali follow..  15  268.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KSKTRRFIEDLPSRTISREGFYSEEEEIENSTQNGELVPLMDESTRRATFGVECVICLES--KVVALPCKHERPCIAIVDYRHACPTCNTEV......... 366
24 -19.000[O] KOG2231 Predicted E3 ubiquitin ligase  ali follow..  9  67.VCYECSTRMRVLCQQNECPICRLLYCDLCVETLLCEYCN---KRYVDRDELFR-DYADLAEHFRAEHFEEGKCATERNEIEYKAHVANVHGKSLNKQQAKQTRTLQVEITLGPRGRSGQTEQGITSVRTRNDEHNDYQNDLPSITQRHVSIDAGNEEQFPTLRGASTAPSVSLVRPPPPSMRNLSGTSGLARTKENFPALGGGNGGGVTGPTSSSIAARAAQSQHPVAAVFKKPTSAAGSGSRSGPPGNGMLLHVSNRSAAVPKKAATPQVDFPALPGKGNKKNLRNLEEDMLPSGSPVPMANISAKHRSLADDYVSVASPSTFQKLQMVQKEEDEAKARQEALKKSAPKLTAAEFPSLGPSASASSSRTTAPKPSSGSPSLNWSKPANEKKQRELENRKAKVAPAPVLPSPTSKPAPKASNNNVQEQQANKKDKKQKDKKSNQENQPKTAKP-------------------------------------------KERNNNNEQKTNGAPSTPIRAPPGLKPGGPLKPPPGFVSNVTVNSVAKLPNNLTFTNSLGESYDIVPSPYTYTDPPDTEVRNQKLVDEVMSLLKTPEALNEFRLLSSKFRDGSCSGQA--YEHCQCKQQELYLVHKQHLNSLPPAERKSVPALEVCKVCKQ-----ILIT--HQQA--------KNFPVLGSSASNTHR.... 866
25 -18.700[O] COG5574 RING-finger-containing E3 ubiquitin ligase  ali follow..  36  356........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RDFECAICSNVAYKPVRLGCSHV--CLHCLIILDFCPLCRAKEV........ 403
26 -18.200[R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)  ali follow..  8  581.........WNLHVMRHG------------GDCQLPIACEMFLDA--KGTEIVRKNLYNFILHMC--SLFDYGLIAAEKTVQKLQGLLSKYAAGQELMQRQREEQLKYWLDVGMHKKQEDPKTLKSPQKPAPPADQASTSSASTSGSGSGSSSMQPPKRMPAHLKRGSAASSPGVQSKGTENGTNGSNSSSSNSKNVAKKSADQPLSTLANTRERRSEYGQKRNVSGSRLAATPASKRKLSSKDVEQAADAPEVLTHSDNAVDVGIIDDECGGFGAVGVMNGVASPVANNSEMDTEAEVEAEPTATKAITIHCQQPVTTPVAAAATANERLPGVAPHRRGPRRADRREEELVASAPGYRCRPSMRGADAGAAAAAAAAPTHPHPHRPPPPPPPQ.................................................................................................................................................................................................................................................................................................................. 955
27 -18.100[O] KOG0828 Predicted E3 ubiquitin ligase  ali follow..  23  682...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NEYISEHGGGTAEHTVDCAICMSDQHSYMVTPCNHV---TSCLENMNQCPVCRSPLPPL...... 758
28 -18.000[R] KOG3002 Zn finger protein  ali follow..  16  4.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGSALKEALESNSTGVDYEVKMAKVEANSKPTKSGSGSIGKFHSSNGVYELLECPVCTNLMYPPIH-QCGHTL-CSSCKLRVNTCPTCRYELGNI...... 99
29 -17.600[O] KOG0801 Predicted E3 ubiquitin ligase  ali follow..  17  150..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KSVASDEMEMHFIMCLSKPRLSYNDDVLTKDAGECVICLEE--TIARLPCLCI---KSCIDS-RSCPEHP............ 225
30 -17.500[O] KOG4628 Predicted E3 ubiquitin ligase  ali follow..  21  224.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TKNNANNKYDTCVICLEIEDDKLVLPCSHPTHCIDLTENRRVCPICKRKVFT....... 282
31 -17.400[O] KOG0827 Predicted E3 ubiquitin ligase  ali follow..  29  6............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CVICAEL--EVFATVCGHM---HNC-DRSKTCPQCRNKCRNIFRVYFN 61
32 -17.300[K] COG5641 GATA Zn-finger-containing transcription factor  ali follow..  8  129PVCKNCLTSTTLWRRDEH----GAMLCNAC-----------------------------L--FLKLHGKPRPISLKTD-----VIKSRNRKSNTNHAHNLDNFRNQTLIAELKGDCNIESSGRKANRVTSEDKKKKSSQLLMGTSSTAKISKKPKTESKERSDSHLSATKLEVLMSGDCSRPNLKPKLPKQDTAIYQEKLLTFPSYTDVKEYSNSAHQSAFIKERSQFNAASFPLNASHSVTSKTGADSPQLPHLSMLLGSLSSTSISNNGSEIVSNCNNGIASTAATLAPTSSRTTDSNPSEVPNQIRSTMSSPDIISAKRNDPAPLSFHMASINDMLETRDRAISNVKTETTPPHFIPFLQSSKAPCISKANSQSISNSVSSSDVSGRKFENHPAKDLGDQLSTKLHKEE................................................................................................................................................................................................................................................................................................ 502
33 -17.100[DKL] COG5220 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3  ali follow..  23  2.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DDEGARKVDEKCPLCQAD-KLLINPECYH---CESCVDRI-PTPGCNKILRK....... 65
34 -16.600[S] KOG2660 Locus-specific chromosome binding proteins  ali follow..  7  14LSCSICD---NILRDATT-------ISEKCIYEETCPVC---------NIDLGSTPLEKLR---PDHNL--------QDLRAKIFALKRRKVKAPGIVSLPGKRKERSISSLVVSTPMVSAQAGTTRRRTKAPTRKELRNGSLAERTVKKEESSGDELLESTSSPDTLNKFTQNKRQSKKSCKESISNKENKDGDEPWDSKMDWKPLNFLVEVANGTKPLKSSASQGSGSKSEHANVSRNQFQGSKTKTKNKKRKCKREDDKSNNGDPTTSETVTPKRMRTTQRKRSATTLGDSRNLPQPDESSAKQERRNGP................................................................................................................................................................................................................................................................................................................................................................................................... 303
35 -16.600[K] KOG4218 Nuclear hormone receptor betaFTZ-F1  ali follow..  12  38ELCPVCGYHYGLLT----CESCKGFFCQNCTQRKRCPYCRF------------------------------QKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPH..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 257
36 -16.500[DR] KOG4739 Uncharacterized protein involved in synaptonemal complex formation  ali follow..  12  4IQCNHCQTKLYL-------TACGHVFCQNCTKASQCYLCK----KPLKVDEINKNLRPDLMELFKVNELKQVVAFQAKQREIYVKCKNAEAKKDTERFAEARSKHVEKTQEIEKRKKAFLEDNVKLKNAKEEKNQLMARLKELREQPSQNLSVNKRRSNTRTEPPFSKISRTGPPSVMRKASHEFSLNLRDQSTSKILTSTPLSNIDYSRRDHRNRLFGAGLEHPSPILRQ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 240
37 -16.300[TU] KOG3895 Synaptic vesicle protein Synapsin  ali follow..  9  351VHIQKIGNNYKAFMRKSITGNWKKSWVDEISEMEVCG--------------LSVVVAKDGREYIISACDSTFALIQEEDIADLVSGRQTGPGKLPSRSSVSSRAESPTDEGVAPTPPLPAGPRPAPMGGPPPIPERTSPAVGSIGRLSSRSSISEVPEEPSSSGPSTVGGEIANKKRGRTASETSSGSGPGSVPSSAGPGSGFSSSFLGKQFSFAGKGEGVISTQPTQRPSEEPPAIPTTASSAVRPESSVSVSDSRNTDTLTERAGAGYQPVTNYEQQERVNPFDKEPSKSGSAASIHTSSSSSISSSSISSRINRNGNAIQSPPPPAGPPPPPPTNVTAVGSNANSSSGYRNSFSSSLSKDKTSYGNYGSTTSVETITRMDTNTTNIGATATEAGEASGVTAITNISNSDGIVAPTTGTITTSVTTNDWRSAIGMRSASVYSAPAAVTTVLPGDTSGYDSNSI------------------ASQGEGLNNPSDLPSYTRPSYSRSESNASKHSDLDVIFGDSKTTPASYGNGKYTRAAGSISDADMIFGGPPSNYKTDRFGASKSMSMTSGGVGSGNGSGSGLGGYKIYDSIQNAAFSDFSDSGSMSSIGSHTKRWSASKEEDDELD....................................................................... 984
38 -16.200[O] KOG0800 FOG: Predicted E3 ubiquitin ligase  ali follow..  22  90..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KESFTVMDSQCSVCLGDPNDKLQIPCKHTMDCID--TSHTTCPLCRLALI........ 146
39 -16.100[A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain  ali follow..  9  2..................................................DVRRLKVNELREELQRRGLDTRG--LKTELAERLQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDT........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 209
40 -15.800[R] KOG2789 Putative Zn-finger protein  ali follow..  10  151..CPICFLYYPSNFNYTRC--CAQPICSECSEPAKCPYCMVIYKPNPKLTPFSFNNNPDTL---QHIKFAH----DDKNVVDFILERARRRALRRAANATLLNSHLLETGPANANANHNTDLSHDPTSHGGPRRTLSSRRQHYLANVEQLMLAEAIRQSLLDAQSNDSTNSLPSTEVSQPDSTNISNEQEIVQPQPTHTTNVALVEEINRPDSVESAITASSSIDTGNENETQEVNSDSLPQFVHQTMTQTNFQESSPSVAADETRVHNVDEYIEQQDLDELIHSPIASTNPFLADQFARSETVDLNAHICSPALSVSDDGVTATNKTQSSFPSVYEHQ......................................................................................................................................................................................................................................................................................................................................................................... 544
41 -15.800[TZR] KOG1704 FOG: LIM domain  ali follow..  12  203FQCAQCDQKYMQRANKPVCLKCSTFSCTTCRLS-CCCVC---------SKNLLGVK------YSRVGECGYQTCGGEDEELL---DRLGSPHRKVTQKSTKVVRIPASPRVAPRHPHVIQQNLTTTMTIQKPSVVIQNQRPKPPQRAPPPPPSENIYETVLPCSSNNSPNFDKKYSHELPTSPNHHNYYSKTPNNLLTGYPEMDGYSTSSSSDSDDEQLYISNIMAAASLSRVPAKSSSRKSKKNEPMMMSGGGVRMAKKKKSSRCTVS............................................................................................................................................................................................................................................................................................................................................................................................................................................... 489
42 -15.700[R] COG5222 Uncharacterized conserved protein, contains RING Zn-finger  ali follow..  15  261...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QRKRENRQIDGDETIWRKGHFKDLPDDLKCPLTGGLLRQPVKTSCNI---SKEALENAFVCPNCETRKEKEVETFLK 355
43 -15.600[S] KOG4623 Uncharacterized conserved protein  ali follow..  10  41VNCWFCNGNVRV-RNSWTCPSCEQYLCDQCNEAQLCSSCERHVNKVLHEKK-KMVLSSKFLNYIIKGYISGISFILVGSFVTLVLLATNRTNLLSQVNRDESACESFHRLCADECDDETLSMLSQQLSGYSDISNSNLSMRTASVCHSPAPTISQRTIQAPASLLSLDSLHLSKQRMEQQAWSSNYGDASTVVAPRVQPAMMFQQKPMRPLESQWYRHGQSNLAQGNTFTRSTQNLLMPSRLPSINRNVGGADVSAWVAANQSVNQDLCTANLMRHYEEKQQNQLSRTSSQSSGFESQPRPEAQCGTGAATVRDYGWSEARESQRNFAVFPPMPSPTPTITPSEYQYSRTALPQQQPTMQPGDLLRKWIEINSKSS.................................................................................................................................................................................................................................................................................................................................... 676
44 -15.600[R] KOG3138 Predicted N-acetyltransferase  ali follow..  8  15..R--CESPVE--DNYLECQECRRMVHIKCLPH-TCVKCEVIVRQRIPWLLVLTLTLYNLHGFFH-----------RTHIISFVDKNWNYIFGPNVRRRKQWTGSVSGALSHNSPEYFQSGLDVFQENGWWKLAKPFQTPRSVLKEYEKKQQLRLQMRIEKRLPAADETSCSSEISVADHAQDNPPLIKAEAEKPSSTEGCARTIPYMGRLPKIQTQPSPLSQETLPGPPILQENIAPPSQKEEEPQNQPMSMVQAGLMD---FLAESLESDDFTMFGNLPGIMPPPLIGAGKNDFFMTEPLLHAPLNNEGLFDMDTNFAIPNTADETKPISTEEPAAESSEEQKEGEVEDEKPEEDESPDYQPRIVQVTNYQAQEANESIKEEPLEEIMQDDDVTTNSKSSILEPCKPSGFVRQPRRNWPWLQEAQDPDDMAIPSENLKLIN---------------------------------AYEEQKLYQRLDRIFALEHQCHISIPAYVRRLYRKLSLRKWKRDHNRHIFNLDEHIDPLGRARLKMLGHQKAEILDRYQLLAHSRQDARSSFHARLAGCTQYELFESPYSQRVLH-IFRSETMAPPWLKLMCELQHRVNGSHPTRSTIDFCFVRPQHIPAVNALLQSSECLSYPDYSVVALYKKIGCGFL--AYISF-MAVRPCWQRSGIASFMLYHLIQLYQK 740
45 -15.500[R] COG5236 Uncharacterized conserved protein, contains RING Zn-finger  ali follow..  8  154..CPLSVCDFG-LKSEHNCATHKHAFCAFCSGKR-CHICD----KMNPASPQYFKDYNQLFDHFKHSHYTVQTCLDNKELAHILQEHGNILKGKPKFFQSELSTFISAPSRVIRERDDYDLPSISSLPGSSSGSRTDVRSASSPEESRLRLAERAKYYLENSKEDFNKFSSYNEDYSKGRLSAEKLLESYKLLFTKPNADVYLLIHNLAETFPKNSSKYNNLNAIYEQREQTLARQTSLPSLSSDSSLSMSIGRGHWGGTNDGGSAGAALGVRNIKNLPTLKSPSASYDPFATTVKKNTLRPVQNIKRTTPQSVSYRTSTNTVAFSPTYLESKKGSSSTSLNNSKDKLKSLNLPQLPPPKPKVQIPGLNRPQIADPKQWGKKSSTQDTNVHDNLRELNTTSGGNKKKGKQKQL............................................................................................................................................................................................................................................................................................... 633
46 -15.500[O] KOG3579 Predicted E3 ubiquitin ligase  ali follow..  12  4........DFT------------EPVCRGCVN------------------------------Y------------EGADRVEFVIETARQLKRAHGCFPEGRSPPGAAASAAAKPPPLSAKDILLQQQQQLGHGGPEAAPRAPQALERYPLAAAAERPPRLGSDFGSSRPAASLAQPPTPQPPPVNGILVPNGFSKLEEPPELNRQSPNPRRGHAVPPTLVPLMNGSATPLPTALGLGGRAAASLAAVSGTAAASLGSAQPTDLGAHKRPASVSSSAAVEHEQREAAAKEKQPPPPAHRGPADSLSTAAGAAELSAEGAGKSRGSGEQDWVNRPKTVRDTLLALHQHGHSGPFESKFKKEPALTAGRLLGFEANGANGSKAVARTARKRKPSPEPEGEVGPPKINGEAQPWLSTSTEGLKIPMTPTSSFVSPPPPTASPHS-----------------------------------------------------------------------NRTTPPEAAQNGQSPMAALILVADNAGGSHASKDANQVHSTTRRNSNSPPSPSSMNQRRLGPREVGGQGAGNTGGLEPVHPASLPDSSLATSAPLC--------------------------------------------CTLCHERLEDTHFVQCSH---CFPCSRQ-EKCPLVGSNV-----AFMQ 541
47 -15.400[R] KOG1280 Uncharacterized conserved protein containing ZZ-type Zn-finger  ali follow..  11  15HRCENCK-ISDFQGRRYTCRFCEYTLCGKCFDANKCALCD------------RGLSTAHLFMHLLQEHRDHR---DHDAYLSLVNTLYIADNGMEQQVPVPQPSSQTRSTRSRNLASVRPVAGGNTRSEQRTEQVFDSALSLALMVVQLDNMDSTAADFPERCYEILQQTETVLMQHRSSRVPDMEAIESFVRVIEDQVVTSMADRRQRLGASSSSLHRLTRIEAISPGTNTALAMGMRAAMPVLVDQPTTMVRRQTARRTGEPIGIALQSAVASSSRSGKAGSSSGVAKAQTKTQGDQPTKKVSTVITSPLKDKRFLCSKLVSGNGQKWESKLLKATFTEAMFCSMLADEELFQPPIGLPW--TANFMLDAVEPSGSVKSNGKLLL-------------------PVKTKELMERFYRGLAEYKTWIGYQTEPTA--------------ESKATELPSASTSSAYFTVLGDIP--------------------------ADSGSDDLESNASEEMASDLHGEGNSDDLAGLEEDKESGEEEN-----------------------------------------------------------------------GDEDDGASDSD-----------------SDECGSEVMYCGQCFDERIKIIYHR-GEKLLNGDASKSYN-CVFCKKRFSA....... 608
48 -15.300[O] KOG2879 Predicted E3 ubiquitin ligase  ali follow..  15  293....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SAVKNILSPFAKDKSSSTKEDTVTCPICQVDPAI-LKELTCRR--CYYCIRT--RCLRCNEPVVAIQRE... 383
49 -15.300[D] KOG4259 Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain  ali follow..  11  1..............................................MPESDVTKMKVADLKRELKLRGLAVNG---KTELQDRLQTALLEGDLSLEDSAIADAIDDDDVSFTDEDEHKLLGDENDDELLKSPVSTPTTVAIPDLLAEEKTSSAPDAAAPTKKIVLKRNNSQQSTGTVASTGTTPSKENEAPAAAASDSTGETPTKKHKPIVVGPKTEGEKPSGDKKLNQLTAQERLELRAKKFGITPPAVANTATAVAVAINKSSSASITANKGNKETEEQQKEALKKRAERFGFVVPDKAPTSKADDRLQKRKERFGAGAVSAATTTPTTTESKDAWSEKA...................................................................................................................................................................................................................................................................................................................................................................... 294
50 -15.200[K] KOG3815 Transcription factor Doublesex  ali follow..  6  24.............QRTPKCARCRKRYCKDCT----CEKCILII----ERQRVMAAQVA-LRR---------QQANESLESLIPDSLRALPGPPPPGDAVAAPQPPPASQPSQPQPPRPAAELAAAAALRWTAEPQPGALQAQLAKPDLTEERLGDGKSADNTEVFSDKDTDQRSSPDVAKSKGCFTPESPEIVSVEEGGYAVQKNGGNPESRPDSPKCHAEQNHLLIEGPSGTVSLPFSLKANRPPLEVLKKIFPNQKPTVLELILKGCGGDLVSAVEVLLSSRSSVTGAERTSAEPESLALPSNGHIFEHTLSSYPISSSKWSVGSAFRVPDT.............................................................................................................................................................................................................................................................................................................................................................................. 339
51 -15.000[O] KOG2164 Predicted E3 ubiquitin ligase  ali follow..  34  214............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CPFCLEEPVAARMSRCGHV--CFSCKCGHRSCPICWDSIRL....... 278
52 -14.800[BK] KOG2626 Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2  ali follow..  9  22..C--CDGKRELGSVEVVCSTCLKWFHGRCLKE-TCKQCEDWKAKKADLVQMCVTVLATLFTYLSL----------KDEIVPYMNENWYMLTAIKQKKEWHQNLAPTLLKEKNIFVQHNDDDDLFALAEKNLSLLGPLHEAVKLIGKRPIERENREPRHIELPPIEGPKTRGASKRRHAEAPVTGKKQKLAADYSSTAAPNGVQIDIPFSKD........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 261
53 -14.100[O] KOG3970 Predicted E3 ubiquitin ligase  ali follow..  22  38.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QSYLTWLTDQDYDPNCSLCKTAEGDTIRLNCLHLWKCFD-APAGYRCPCCSQEV......... 104
54 -14.000[R] KOG1312 DHHC-type Zn-finger proteins  ali follow..  8  136..CSTCR-----IVKPARSKHCS--ICNRCVLVHHCNNCLFLISNIFSMCYAFLRLWYISQLAIVKEGMTTNEQDKWYTIQEYMREGKLVRSLDDDCPSWFFKCTEQKDDAAEPLQDQHVTFYSTNAYDHKHYNLTHYITIKDASE.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 318
55 -14.000[R] KOG0490 Transcription factor, contains HOX domain  ali follow..  10  5..CAGCERPILLLN---QCCECGKLYCKNDFFRRKCAGCA----QGISPSDLV-RKARSKVFHLNC--FTCMVCVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLGGRLDESEMLGSTPYTYYGDYQGDYYAPGSNYDFFAHGPPSQAQSPADSSFLAASGPGSTPLGALEPPLAGPHAADNPRFTDMISHPDTPSPEPGLPGTLHPMPGEVFSGGPSPPFPMSGTSGYSGPLSHPNPELNEAAV........................................................................................................................................................................................................................................................................................................................................... 401
56 -13.700[R] KOG1311 DHHC-type Zn-finger proteins  ali follow..  11  105..CVTC----KFYRPPR-SSHCS--VCNRCIETHHCHNCFFLCSLSIHMMYVFFLCFAYVWSGSDTNARDHILSPPY--VIGLTVFHLVLVARGRTTNEQVTGKFTSGYNPFTNCKKTLCHSQLPTFKSHVMEFRKQRKEEQARLANRINGPVEEQNAHADDERDETSVLYVPDQKRADGKMVAVVEFNKNNSVLRQQNTTTTTSRSESQNRITESQSQSMSMSSGCDESRITVGGGGGGAEADGSTCNLFEMERGGGRHKKN..................................................................................................................................................................................................................................................................................................................................................................................................................................................... 392
57 -13.700[O] KOG1039 Predicted E3 ubiquitin ligase  ali follow..  21  208..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QRKAHEKICMLTFEHEMEKAFAFQASQDKVCSICMEVILE-ILSNCNH-TYCLSCNPIIKSCPECRVI-NELIEAFKQ 320
58 -13.500[K] KOG4577 Transcription factor LIM3, contains LIM and HOX domains  ali follow..  9  30..CAGCNQHILILK---KCADCGSVYCKEDFFKRKCTACQ----QGIPPTQVV-RKAQDFVYHLHC--FACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVTGGQLMNGSFSMDGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHAGQGVSQTLRAMAGGPTSDISTGSSVGYPDFPTSPGS.............................................................................................................................................................................................................................................................................................................................................................................. 380
59 -13.500[K] KOG4215 Hepatocyte nuclear factor 4 and similar steroid hormone receptors  ali follow..  20  51..CAICG-HYGASS----CDGCKGFFCRQCVKRNQCRYCRLMKKEAVQNEDVCESMKEQLLVLVEAKYIPAFCELPLDDQVALL........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 211
60 -13.200[K] KOG2169 Zn-finger transcription factor  ali follow..  8  423LLDPLCKTRMTTPSRCQDCTHC-LSYLM--MNEKQCPVCS------------SNCPYDRLIDYFL--DM-----LAKKNTTEVELKEDGSYDVIKEEAFCISDDDDDDVVPATVNGTASCSSTNGNGLANEAAKKKPADDDIITLSDDDDEELNRGIMNSLNDSFSPGRHTASAELAAQKTPPQQKKKTKDDDIEIITLDDTPPRPVAASANLPMRQMSQQNQMPVGSSPSGMASTQMGMNEGASKTIRDALNKIGEPMINQAPHFQMQNGLIGRNNQMVHMQQHHLQQQQQQQQSPQIMSPSFYAQQQMSNGDTNNIQPPRILSMAEIQANASRLLVNGHLMIDHSGVTMRNPRGSRN..................................................................................................................................................................................................................................................................................................................................................... 772
61 -13.200[K] KOG4216 Steroid hormone nuclear receptor  ali follow..  11  96IPCKICG-HYGVIT----CEGCKGFFCKNCTSRNRCQHCRL------------------------------QKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLRE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 318
62 -13.200[O] COG3058 Uncharacterized protein involved in formate dehydrogenase formation  ali follow..  17  190..CPVCGSVSSMVLRYLHCNLCETEWCSNCEQSGSCDDCTYLKILYQEKEPKVEAVADDLAS------LVLDARMEQEGYARSSINPFLFPGEGE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 309
63 -13.200[R] KOG4299 PHD Zn-finger protein  ali follow..  14  232..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SENFNDMEGRAEDISSNELLPTPEEYPYRYNNDYCSACHGP---------GNFLCCETCPNSFHTCPICNE........... 308
64 -13.100[D] KOG3056 Protein required for S-phase initiation or completion  ali follow..  21  475VICQVC--KYTAFSASDRCKE-KRFFCKDCLPKQSCKNCSRWQRTAMIREKKILTGRETLETFMGC-NLNL--LVPDEE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 581
65 -13.100[R] KOG4323 Polycomb-like PHD Zn-finger protein  ali follow..  11  191TLCSVCQRG--VF-----CDGCNSPYHQLCHHPPICMKCQYRRAKQGMTAQDLGLSESDKKMYLSS--------LPTPHLADLILFCEKSYPSLPIYNPRTRELLGEIRHQLLVSSERQQISLQERLHAKQDEAPSDEPAPVPYTASYVANSGTLYDYPTLIRLAIRNTLSPSKDEIFNWLAQNVPLLPTFHDSASEAIRWMVNKGQLVRSGSIYQIATVEEYPHLQPSLLPTFQRNRK............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 439
66 -13.000[S] KOG3740 Uncharacterized conserved protein  ali follow..  13  272YMCAQCKTDFTRWREEKS----GAIMCENCMTTN--------QKKALKVEHTSRLKVKALQ--------------QEQEIEQRLLQQGTAPAQAKAEPTAAPHPVLKQVIKPRRKLAFRSGEARDWSNGAVLQASSQLSRGSATTPRGVLHTFSPSPKLQNSASATALVSRTGRHSERTVSAGKGSATSNWKKTPLSTGGTLAFVSPSLAVHKSSSAVDRQRE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 472
67 -13.000[T] KOG4381 RUN domain-containing protein  ali follow..  32  869..CTACEREFNLTRRKHHCRSCGEIFCKACSPVRVLLGS..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 920
68 -12.800[T] KOG4825 Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa)  ali follow..  25  783............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CDHC-KQVVEISSLT-EHLLTCYRCSEAVFKCPLCHENFSPGEEAWKA 861
69 -12.800[U] KOG3799 Rab3 effector RIM1 and related proteins, contain Rab3a binding domain  ali follow..  8  82..CQICQTKFA-----HKCFYCQLRSCARC----ACSLCQ-----------------------------------KRQQILA---PEEQPQPKISGSEPSPSPQPLTDDNVPEPQQRRAEPPDKMNTPNYQNNQQPRGMGMQPNHNQTQQNFMNQNQNSNQHPNQNHNQNQMQNPHQNQNHVQNNHQGANNHQQNNRRAMQQQPMSQNQANQINQMNQNQNQQQSHNQNMTQNQRNQTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQHGQQEQHHQQMNEQRTDNNRMRENTNGQGGMFNRQPSLEQTTPMNKYNHVEDDGMNQRPT............................................................................................................................................................................................................................................................................................................................................................................ 392
70 -12.700[S] KOG4556 Predicted membrane protein  ali follow..  10  109....YCDAEFDVIRKKWVQKQCLIPF----------YSVEASQA---------------LHIIFAIVTS----------IFSILVIVELRKKPIRSNSQSINHYAQICASKVAKAPSSTNNSSSGYLNSQYDDLGSSREKVKVTEKKEVKGQFERNSKKKKKNPRPEMPAPDCAPCSSNRSSEEESNLEDVYTQPIKKKIMPLRRPDLEEENRGTNVTSLVSFDPKSATLLRIRQHLEAEPSDRDTPDYDMYERLRSRSSGHSEVAPASTIPLSSDYKSRNASQDSVPSMFAPMLNSPAPSSTTSGSSSRTSGASLAHKTHIVGKGGISLSTVDPSPILSPGIRLSEQLGAKNQSYKSAFRVQKTENARVISHYHAPNE................................................................................................................................................................................................................................................................................................................................. 449
71 -12.500[O] KOG4159 Predicted E3 ubiquitin ligase  ali follow..  24  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RLFFE-----VTTPCGH-SFCKNCLERCPYCPLCKESL......... 38
72 -12.500[O] KOG1734 Predicted RING-containing E3 ubiquitin ligase  ali follow..  14  267...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AHICTARMASRIGYYTPEGLPKKHLEDGVCAVCGGRLDDSEHV--HDADAVVTTKMDEKLYKLSCGHVEFCIR-VGKLQTCPYCKERVD........ 362
73 -12.500[S] KOG4317 Predicted Zn-finger protein  ali follow..  16  26.ICHVCNKQFS----QYTCPRCNFRYCSPCYKSHSVQCTESFMRDNVNDELKQVRSDDQ----------------TKRKMLEILKRFHEEEEEDDGGIDS........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 105
74 -12.400[R] KOG2893 Zn finger protein  ali follow..  9  13..CWYCNRDFDLIQHQKA-----KHFCHICHKK-------AIHCMQVHKETIDAVP--ELEIY--MEGIPEKDMDERRRLLE---KTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKALFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSK............................................................................................................................................................................................................................................................................................................................................................................ 350
75 -12.400[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)  ali follow..  5  23...........................................SSETGTRRLSDLRVIDLRADVRKRNVDSSGN--KSVLMERLKKAIEDEGGNPDEIEITSEGNKKTSKRSSKGRKPEEEGVEDNGLEENSGDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVEDDDADNLQESLSDSRELVEGEMKELPEQLQEHAIEDKETINNLDTSSSDFTILQEIEEPSLEPENEKILDILGETCKSEPVKEESSELEQPFAQDTSSVGPDRKLAEEEDLFDSAHPEEGDLDLASESTAHAQSSKADSLLAVVKREPAEQPGDGERTDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPSPEARDSKEDGRKFDFDACNEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKE........................................................................................................................................................................................................................................................................................ 397
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;