FFAS03 results for KOG4600

Query: [J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2), from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 .`
#	Score	Template	Links and tools	%id	First	`MAMATSMSLNLIGAFKGLSLSSTSSFLRGDLSFSPKTSFTVTLPLENLQAPIPLTIESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPTPELVLASASVDDAEANPEC`	Last
1	-87.400	`[J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2)`	`ali`	100	1	`MAMATSMSLNLIGAFKGLSLSSTSSFLRGDLSFSPKTSFTVTLPLENLQAPIPLTIESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPTPELVLASASVDDAEANPEC`	198
2	-49.000	`[J] COG0211 Ribosomal protein L27`	`ali follow..`	57	1	`.........................................................MASKKAGGSTRNGRDSEAKRLGVKAYGNELIPAGSIIVRQRGTKFHAGDNVGMGKDHTLFAKVDGYVEFKTKGLNRKTVSIRPYTGSEE....................................................`	90
3	-9.550	[J] KOG3409 Exosomal 3`-5` exoribonuclease complex, subunit ski4 (Csl4)	`ali follow..`	15	1	`.............................................................................MSEQQDETVVCLPGERLCRTED-SIVLGIGTYE-QNGYIYASKSGIVNIEDSGDKCQVVSVHKPGFHLTIPATGDVVTARVLVTTPK..................................`	85
4	-8.160	`[J] COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)`	`ali follow..`	18	9	`...............................................................................KTIKNGDFVLPGDYLGVIE--EYLPGEGVIV-EDGNLYSARAGWVKINKDKVEISLEPASSVPPIPK....................................................`	72
5	-7.650	`[OT] KOG4041 Protein phosphatase 1, regulatory (inhibitor) subunit PPP1R2`	`ali follow..`	18	3	`..............................................................TTGSSSH-QDTQ---------DAQMLSTGN-LHKQ--LKVNSGEKINLGKHDFFSAYACGIIEIA.......................................................................`	61
6	-7.350	`[W] KOG3848 Extracellular protein TEM7, contains PSI domain (tumor endothelial marker in humans)`	`ali follow..`	10	389	`..................SSRTTTTIGATTTQFRVLTTTRRAVTSQFPTSLPTEDDTKIALHLKDNGASTDDSAAEKKGGTLHAGLIVAASIFFIERRPSRW-PAMKFRRGSGHPAYAEVEGFIVSEQ......................................................................`	528
7	-7.030	`[J] KOG1686 Mitochondrial/chloroplast ribosomal L21 protein`	`ali follow..`	11	1	`MSFLAQTMRQMLRHVPNRSLLTAGAMRPLSISPVIGQQNKPATESVDLSAIAKDQQKECLSICERNRQVQKSEQGRLFAVVHLCGKKVTPGDIILVEGYWPPTIGDEISL--DKVLLAGARDFTLVGRPILEPGLILV............................................................`	139
8	-6.730	`[OU] COG1585 Membrane protein implicated in regulation of membrane protease activity`	`ali follow..`	12	8	`IGALVLAGLELAVGEFTLLMLGGAALATAGVALIGVPVWAEFVTFAVASAALLMFIRPAIRKRLLKPKVLDSSPRALVGHRAEVLEDVGATSGQVRLDGSIW-PTHTFAEGEIVSVIDIQGTTAIVWKEA....................................................................`	142
9	-6.680	`[S] COG3034 Uncharacterized protein conserved in bacteria`	`ali follow..`	11	1	`MGRKGLLAIVLLSLFIAFILKFFWLTPYDEDVYLPVEKPVASSLKIIHPGDQLFIRILKAEDKLELWASANNKPSGGLGPKHKQGDGKSPGFYATNKGLLN-YPGDFIMVGNCVS-----AGCYAMTDAGIEEIYQLV............................................................`	168
10	-6.340	[A] KOG3013 Exosomal 3`-5` exoribonuclease complex, subunit Rrp4	`ali follow..`	13	29	`..........................................................DEIMEDEQMGLVDGEDVLEEFDKSIHQNLVTPGQLVTDDP--QFMRGHGTYF-EDGGIYASVAGSVQRVNK.....................................................................`	96

FFAS is supported by the NIH grant R01-GM087218-01

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