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Query: [D] KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MELEPNKSLSADMPSLLSRSSEAFNGGTGYRSSSDLSMFSSSLPTLFHEKLNMTDSDSWLSFDESSPNLNKLVIGNSEKDSLEDVEPDALEILLPEDENELLPGLIDELNFTGLPDELDDLEECDVFCTGGGMELDVESQDNHAVDASGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTEVTNFYNQVGSHVANSPPGNWPIGSPVKGSPSHAFTRPHGLGMVRPVNSDNMPGLASILPAHPSSFHGFSPVSNDQGLLNHSNQTILNKGLMHNISYGQPHSLPEHITGGISNSMRFIAPHSSGFGTSSDHRYRWGSPPQHMNYPGYTGVSSSSSSTERPFTVRHGFPFAERQASLLGKYQHHVGSAPSSIHFNTQMNCYTGSPEIPLGFSDMGINRNYNSAHGKANLGVSLPGNSSEQDFTGFGMSSMPTVPFGGSRGLQSVRPEPFAEQGRIHNHESHNQNQFIDGGRYHIDLDRIASGDEIRTTLIIKNIPNKYTYKMLVAEIDEKHKGDYDFLCLPTDFKNKCNMGHAFINMVSPLHIVPFQQTFNGKIWEKFNSGKVASLAYAEIQGKSALASYMQTPSSMKEQKQLFPEVSYHDDGQDANDHVCLSDTKSHFCFCFLast
1 -209.000[D] KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins  ali  100  1MELEPNKSLSADMPSLLSRSSEAFNGGTGYRSSSDLSMFSSSLPTLFHEKLNMTDSDSWLSFDESSPNLNKLVIGNSEKDSLEDVEPDALEILLPEDENELLPGLIDELNFTGLPDELDDLEECDVFCTGGGMELDVESQDNHAVDASGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTEVTNFYNQVGSHVANSPPGNWPIGSPVKGSPSHAFTRPHGLGMVRPVNSDNMPGLASILPAHPSSFHGFSPVSNDQGLLNHSNQTILNKGLMHNISYGQPHSLPEHITGGISNSMRFIAPHSSGFGTSSDHRYRWGSPPQHMNYPGYTGVSSSSSSTERPFTVRHGFPFAERQASLLGKYQHHVGSAPSSIHFNTQMNCYTGSPEIPLGFSDMGINRNYNSAHGKANLGVSLPGNSSEQDFTGFGMSSMPTVPFGGSRGLQSVRPEPFAEQGRIHNHESHNQNQFIDGGRYHIDLDRIASGDEIRTTLIIKNIPNKYTYKMLVAEIDEKHKGDYDFLCLPTDFKNKCNMGHAFINMVSPLHIVPFQQTFNGKIWEKFNSGKVASLAYAEIQGKSALASYMQTPSSMKEQKQLFPEVSYHDDGQDANDHVCLSDTKSHFCFCF 803
2 -61.200[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)  ali follow..  15  2............NAAASSYPMASLYVGDLHSDVTEAMLAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF--VHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA-----ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAERYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 384
3 -52.500[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)  ali follow..  10  1............MATATIALQVNGQQGGGSEPAAAAAVPQGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAKKAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQP--IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 559
4 -49.500[R] KOG0110 RNA-binding protein (RRM superfamily)  ali follow..  9  229TSGEATAKKPKAKADKSNLELFTIKIHNVPYNTKRQEVFKPLKPY---SVRLPSKVHGFCYVGFKTEKDMAKGMLKNKSDDISESGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTLDGTDFHGRLLHLLPSKDIEKNPKEDLDEDEPAKKRSNTVILAKNLPAATEISEITPIFSRFGPIGRIVLP-PSGVTALIEYCDPLEARQAFKKLAYSKFKNAPLYLEWAPEQEDADDEPEPNTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRSLGYGFIQFKKSSVAEHALKNLQLTHIDGNPVELKRSDRVLKTQDNDGAQRRLASQK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KQTGTKILVRNIPFQAQYREVRDIFKAF--GELRSLRIPKKATTG-HRGFGFVDYMSKAEAKRAFDALSAS--THLYGRRL-VLEWSANDDNQDVEELRKRTA...................................... 880
5 -49.300[AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)  ali follow..  10  3.................DEMPKTLYVGNLSRDVTEALIFSQIGPCKNCKMIDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF-PDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQ--GFNQTQSSAPWMGPNYGVQPPQGQNGSMLPNQPSGYRVAGYETQ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 375
6 -48.500[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)  ali follow..  14  1..................................................MESNHKSGDGLSGTQKEAALRALVQRTGYSLVQRGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCA------------------SVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIKTKNRGFAFVEYESHRAAAMARRKLLPGRIQGHGIAVDWAEPEVEVDEDTMSSKILYVRNLMLSTSEEMIEKEFNNIKPGAVER-VKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQG...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 325
7 -48.000[A] KOG4212 RNA-binding protein hnRNP-M  ali follow..  10  1...................................................................................................................................MAAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVEKVGEVTYVELEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFGINKMSNALKRGEIIAKQGGGGGGGSVPGIERMGPGIDRLGGAGMERMGAGLGHGMDRVGSEIERMGLVMDRMGSVERMGSGIERMGPLGLDHMASSIERMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMGPAIERMGLSMERMVPAGMGAGLERMGPVMDRMATGLERMGANNLERMGANSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFAGSFGGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNEC--GHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMK----------------LSGREIDVRIDRNA....................................... 730
8 -47.900[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)  ali follow..  13  2.................................................................SGARRDNRRSNGRDDSSRVAKAENDRKPGRENRGGDEKRGNSNNAARSGGGGGGN-RGGAERGIAPAQQPYDNNGGHRSGGGGGRSGGGGTSFNGAAFTESQLMDEV----PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS--GKGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHGA----------AIRVKELSPTVSNEMLYHAFSHFGDVERAVHIGRPTGEGIVEFERKPNCNEAMAAIRDKVFSPKPLICEVLEPRDEDDGLAERMIPRTPGLSKERELGP.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 296
9 -47.300[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)  ali follow..  11  1.........................................................................................................................................................................MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILGLSRGCAFVTFTTRAMAQTAIKAMHQAQTCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISA-------------------------------------------------------------------------------------------------------------------ASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPF--GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ-----GMKRLKVQLKRSKNDS................................................ 479
10 -45.300[A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)  ali follow..  14  4...........................................................IISTMEPQVSNGPTSNTSNGPSSNNRNNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA-------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRITGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 380
11 -44.900[A] KOG0131 Splicing factor 3b, subunit 4  ali follow..  17  10.........................................................................................................................................................................GANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKK---SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAER.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 205
12 -42.000[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)  ali follow..  12  7...........................DIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSNRSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGYRYGHSKSP--------------HFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRISRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQAEKNRLAAMANNMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQE............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 341
13 -41.600[R] KOG4733 FOG: RRM domain  ali follow..  14  3...................................................................................................................KVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGW----------DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQ-----------DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 240
14 -41.400[R] KOG0118 FOG: RRM domain  ali follow..  15  5....................................ETGAAATAADAGGVVIPPSSPPSSMTSQDSGVSSDDQNHHSRIDQVVARSDGVDGGESFKRDMRELQELFSKLNPMAEEFVPPSLNKQGG-NGVNGGFFTSAGSFFRNNGFAGTGNGGYGNENGGFRRKKKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRIPNSVLRFAFIEFTDEEGAMTALN-LSGTMLGFYPVKVLPSKTAIAPDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGLRLLGDYQHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPRSPRHPMH................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 358
15 -40.800[A] KOG1190 Polypyrimidine tract-binding protein  ali follow..  12  3..................................................................................................................................GIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPRGQPIYIQFSNHKELKTDSSPNQARIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFI--------------------------------------------------------------------------------------------------------------FGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN--------VVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHD---LGENHHLRVSFSK..................................................... 547
16 -40.100[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)  ali follow..  13  9.......................................................................................................................................ANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMK----DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVTGMHKGCAFLTYCERESALKAQSALHEQKTMNRPIQVKPADSESCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILGNSKGCAFVKYSSHAEAQAAINALHGSQTASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQREGP---------------------------------------------------------------------------------------------------------------------------------------EGCNLFIYHLPQEFGDAELMQM----------------------FLPFGFVSFDNPASAQTAIQAMNGFQ-----GMKRLKVQLKRPKDAN................................................ 483
17 -38.800[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)  ali follow..  14  544.......................................................................................................................................VKGDDGGFKAPLPPSNAKSSSAVSSSNASSTPAPGSFAVQKAAPGTEDARTIFVSNLDFTTTEDEIRQAIEGVASIRFARKDLVHRGFAYVVMENDQKAQQALL-KDRVPVKGRPMFISANDPEKRVGFKTLEKSKVFVRNVHFQATDDELKALFSKFGTVTSVRRVGKPKGIAFVDFDTEASAQKCVASGDKLMLRERELEVALSNPPVKKDKSHGKPAAIGASLEEDGPRKGHAAKLQLVPRAITNKTPQITARLDAMDVSEGTSTSQPLSNDQ........................................................................................................................................................................................................................................................................................................................................................................................................ 828
18 -38.400[A] KOG0120 Splicing factor U2AF, large subunit (RRM superfamily)  ali follow..  10  73.................................................................VPDTPQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINLKGQSLKIRRPHDYQPMAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLTGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTDELRDEEEYEDILEDIKEECTKYGVVRSVEIPVPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHRRE..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 415
19 -36.800[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)  ali follow..  17  5...............................................................................................................................................................................ADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRRVLVSGLPPSGSWQDLKDHMREAGDVCYADV--QKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSP......................................................................................................................................................................................................................................................................................................................................................................................................................................... 217
20 -36.200[K] KOG4210 Nuclear localization sequence binding protein  ali follow..  14  1.............................................................MSETELSKEDAVTKKDNEEQVKKALLDPTKKRKAEDEIEIDLKSSIPLSKKQKRLLRRGKVTLEELNA--IDPKSIEEYKEDAEKKKSGASEKDAQGEESTINTPTGDESGEVVKKKKKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKAMKNKGFCYMFFKNVEQMKAVLE-LSESHLNGRNMLIKDSENYSGRPDKDDPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSS......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 336
21 -35.400[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B  ali follow..  23  3.................................................................................................................................................................................TADIPPNQSIYIQNLNERIKKEELKRLFSQFGRILDVVATPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNMVISFAKK............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 232
22 -34.600[AR] KOG1365 RNA-binding protein Fusilli, contains RRM domain  ali follow..  9  32...RRQEDANNNSTSPSSASSSGSEISTRLVNITPEDVFDEHPTSIKHLYYGNQEEDGMEQEEIEDDVAIARAILDMDDELLEDNVVCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLAL-KRHRNFLLSRYIEVYKAGLDEFMHVATGSSTEAMESANAIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFDGRPTGDAFVQFETEEDAQQGLLK-HRQVIGQRYIELFKSTAAEVEAPEEKKKDCVRLRGLPYEATVQHIVTFLGDFATMVKFQGVGHPSGEAFIQMINEQAASACAAGVHNNFMSKRYIEVFQASAEELNLHHLVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISPIVP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GQVTQLIIYGIHMSIGVPELVANFTTPEHTVDNVLFTR---PTHLCPGEAILTLRNRGAPPPQTSPLSQIS-----LSAPNFAAYSHHP------QNFPLQPILME.................................. 614
23 -32.400[AR] KOG0109 RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains  ali follow..  10  81.SRSPARLAAPQQPSAQKGHAAHVGFGCAEREVPESAVARLCPRGCLRGAVPFLPRPRGPELLAGSEISADPVICCPRGSGLATPRAQSVLSPSGDSREGDLLQFASSERARLTPMIPRPRLLRIHGAFRTKRFSVRDKEDQWTVSVQRQLVYRPSTEAGHNNKELPPPL-------PPRGACPDDEAVHQKPAPGHRAGDPLSFQAVGKVLECDII---KNYGFVHIEDKTAAEDTIHNLHHYKLHGVNINVEASKNKSK------ASTKLHVGNISPTCTNQELQAKFEKYGPVIECDIV---KDYVLIHFIHMECCPQARLRTAPGMGDQCGCYQCKKEGHWSKECPVDRTGRVADFTEQCNEQYAAVHTPYTMGYGESRYYNDAYAALHYYKRYWLLWLPLRPPLPPIVEPRHAAAMLPTVGEGYGYGPESELFQASAATRNSLHDMARYEREHYMDRACFSMAQATVIEPAVGGATGQVRVLHCTTHAEENHLSWWNLEKGWRD--------------------------------------------------------------------------------------SELDSSVEEMLQLMDSGITICLRNGAASVFKKKEWSTQGEENKQDRNGPVTQADHPIPLDLE-IEQG--------VKIIPTPTSKEGQLAIYEE-----IDFWYLKL..................................................................................................... 712
24 -31.700[A] KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1  ali follow..  14  3....................................................................................................................................TTVSTGATAVATLRETSPPVDGHEEARLNADSDDG----------SHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECPATKRARGFGFITFVDPSSVDKVLNN-REHELDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAKATQRHRGFGFVTFDSDEVADKVCEI-HFHEINGKMVECKKAQPKEVMLPVQLNKSRAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................... 228
25 -30.600[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)  ali follow..  9  2....................................................................................................................................................................EKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGV-QDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIRGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYAN.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 202
26 -30.100[K] KOG1548 Transcription elongation factor TAT-SF1  ali follow..  10  6................................................................................FWDERIHRWR--CLGSEGNELIYIDEEQTWKDYDPNSLKMNKAGSTGAE---VSDVTAEATEGKESSNGEDRHTKRLYESTSAEGYPSGSRNKKSKSENAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDDGTPKGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKVVLKHIFTLEEKDDITEEAEKCGRVTNVVLYKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTLDDEEDEEK........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 354
27 -29.700[R] KOG0226 RNA-binding proteins  ali follow..  10  75.................................................................................................................................................................AATIAVSPFINPALGRLPTMPPVPPSIFMPPQLRAAPIMFPPRVLGIPAPATIEGETPAVNAIPQELLRTQALQSDIDKMNFKKQTDPFKKKIKEQQAKKKAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKERNIDVIKQKRKQKKE........................................................................................................................................................................................................................................................................................................................................................................................................................................................... 298
28 -29.300[A] KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins  ali follow..  8  5...............................................................................TEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRYTREGRPSGEAFVELESEDEVKLALKK-DRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEVRTHYDTTGHCVHMRGLPYRATENDIYNFFSPLN-PVRVHIEGRVTGEADVEFATHEDAVAAMS-KDKANMQHRYVELFLNSTAGASGGAYEHRYVELFLNSTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 385
29 -29.300[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)  ali follow..  17  2........................................................................................................................................................................................VRVYIGRLPNRASDRDVEHFFRGYGKLSDVIM---KNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGYNEERSGSGRLVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAKRNVNQAIVCFTSHDDLRDAMNKLQGEDLNGRKLKCTDETRDRSRSRSPRRRSRSRSPTRSRS...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 208
30 -28.000[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19  ali follow..  19  1..................................................................................................................................................................................................................MESRHFFLASKGFVDILYWVYRFQASSMAFCTKL---GGHWKQGVNVPVSSMGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLPLSLDES................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 152
31 -26.500[R] KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains  ali follow..  9  203...................................................................................................................................................................DRRSNLSNNDRYSDWNPGVPSNKLAILNMPNDVDNTKITLSLGKCGYLPQ-KNTKQIRTFAFVEFSNRETAEQWMTDYEGWLTDGRTLAVEYAKGDPAAGSGNKGDDTLLIRGLPDGINNSLIFDSLGALVCLSSISMLSESKRFAYLQMKSADEAKMLLNLTYKSRIKDKDVQVSWCRDSMSKLIQQQMTMLTAGPGKNSV---------------ATGSLAQGNMTGAEIAAAALSKANAVRQASQQVGQIMTGLPAPAANMIPPNFSVPPPNLSVPPPMQATQPEHQNGVIGMTQTPKGLLPRYLPPNPLTFAHDPNLGYYVDPITKFCYDSATGYYFNNATSQWCNWDLTHHTYFPVETPAVINSADPEEEKMKKNEEGPKTAQDLVKDMAKWAKRQEKDKKKVQISIKGKETKGIELKNVFSNEKQKRIAQTAALFDDDEEEDQEEEVRGRRSEEPSTSSSFSSVPLAPRKSTLQDVRDAMERALYDETKKT------CMLCKRAFSDV---EVLRK-KSDLHRNNLE----KIVYRDRANIGNRLLK---------------SMGWKE-HAQGIVNPIEAERFGRQALYSRYHDA....................................... 925
32 -25.900[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)  ali follow..  12  50.......................................................................................................................................DEENKVKITTRTRVRKLASARLNKRAMERRNWPKFGDAANEEAGSHLTMRAPGTKADESKATGDGLSQLGKGGAVLMVCRICHKTSKCPYKDLAAPTDVFIDKPPTGESSTMSAAPGTGKAAAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRPT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 294
33 -23.400[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)  ali follow..  20  11.....................................................................................................................................................................RDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGR----QYGRGKTGGQVRDEYRTDYDAGRGGYGKLLSQKIAPNTDN................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 153
34 -21.900[J] KOG0129 Predicted RNA-binding protein (RRM superfamily)  ali follow..  15  436.....................................................................................................................................................................LGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIV-KSYFPPKGYAFLLFQDESSVQALIDA-CIEEDGKLYLCVSSPTIKDKPVQIRDPRKTIFVGGVPRPLRAVELAMIMDRYGGVCYAPELKYPKGAGRVAFSNQQSYIAAISA-RFVQLQHGEIDKRVEVKPYVLDDQ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 648
35 -21.500[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15  ali follow..  17  2...................................................................................................................................................................................SMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLTGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRRNQSYEYTER.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 98
36 -21.400[A] KOG4209 Splicing factor RNPS1, SR protein superfamily  ali follow..  10  1.........................................................................................................MSDNDIIDDDVLNIEDMTGDDADLSAIGDLNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLT---PEEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTISGHPKGFAYVEFTEKEGMQNAL-AMTDSLLRGRQIKVDPKRTNKPGMSTTNRPPYVYAGGFRPRGRGARRRPGFAPY.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 205
37 -20.900[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)  ali follow..  12  4....................................................................................................................................................................QPVPGSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAKNTGRSKGYGFVTFRDPEAARRACAD-PTPIIDGRRANCNLASLGRPRPPL--PYAVIPNMPDLLPRTLEMCRVLEVHLLEIIRIITTSKELSILMVTAYGPEYMYSQSQGLYSP-YMGQQYLQVYGVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQLGGPTVSTMTTSSMPALQAPYPSGIPGPAPVQSHIIVHSPQFMQSTASDQTTR................................................................................................................................................................................................................................................................................................................................................................................. 279
38 -20.400[A] KOG4207 Predicted splicing factor, SR protein superfamily  ali follow..  21  1................................................................................................................................................................................................................................................................MSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVPHTKAPRGFAFVRFHDRSDAQDAEAAMDGAVLDERELRVRMARYGRRDL....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 97
39 -19.800[R] KOG4307 RNA binding protein RBM12/SWAN  ali follow..  10  427...TPIVPPVNKPMGAAAVEKFYIELTRLPTDLLRPAAFIHTAPLTLSSVKTVFGPGGHTIIRLDSIADYATMMRRNGEQGIK------IQQSDKKSFDTAIDGIPIPSVSMVPSKEQRSHEDDDKKSRRSRWENTSPIRSPRRSPLRR---DNRDRSRSRSPPRRRRRSRSPRRREEHTDPTRWCVQVTNVPFRMKDEELLEWFSEKVRPAKLTRTFYSDG-WVAEFSSESLMKRSFG--IRTLCTGRTLRLRYIDNAKADEILKPRGTVLSCNGFPKDVTLEDVVEFFNDYNSIRRRGDDGVMTGECMLACQNQENARRASMDLDGQKLRNSVISV................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 945
40 -19.800[R] KOG4454 RNA binding protein (RRM superfamily)  ali follow..  15  1............................................................................................................................................................................MEIKPTPSPPEERTIYVANFSEEVDEELLEELFIQAGPVVKVILRDSNAKFALVEFEDELSVLFAIELMNGVRLFNQELQVKPRNGTNQEELYKRKKGE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 102
41 -19.700[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)  ali follow..  21  2........................................................................................................................................................................................SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRGGGGGRGGGRGGGDGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 88
42 -19.300[D] KOG2186 Cell growth-regulating nucleolar protein  ali follow..  9  165.................................SEQTLLAHANGKKHRVKVERFDAEQQKRQSTQHSTVDKKDYSKQQIEVDINVGLSNLCNVKATCQQNLLSHANGR-------KHRENVELFDATQQQQLEKTTVDKKDTTVNASDGNSEQKKVDLLVSSGVANGYSQAHKKRKLETCDETWKREVVQAEEAKGGGEQKSESKKAKKQDKE-KKQTKSDSDFEHDKEDIKQLLVAYSKEELVNLIYKTAGSRLISAILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECKDTGRGKGYGFVMFKTRKGAREALKRPE-KRMYNRIVVCNLASEKPGKAGKEQDMAEPVNIDLTKMANQSEAVLPGIELGRGHVLEKMHHQQQQTMDMFGQNMPFYG----------------YSHQFPGFDPMYGALSGNQMLAGLPNYDLNFDNRKTKKMVWFQCEDCGESLKKPKLSCIDCGEMFGRDTVQGHNQCITEAEKYGPKGQSKSANGTPAKPKDISKQEPDFDINVGLSNRYPWFCSLCNTKATSQQTLLAHADGKKHRGKARQQQEQSTTLDNKDGSENASNVDSEQKKVDLPASSGVANGESHPEKKRKLETLDETSEGEEAKGSDLKKAKKQDHEKKINWKKLITSALKSNEDK-TLKMK----KLKKLVLESIVDSGRDKS-----LKAELELKVNLSSRFT----------------------VDGKYV------KLVAKD................................................ 849
43 -19.100[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)  ali follow..  25  10...................................................................................................................................................................................PPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDK...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 101
44 -18.900[R] COG0724 RNA-binding proteins (RRM domain)  ali follow..  18  124......................................................................................................................................................................................................................KTILSELSALEDPATNEGGVEAASEEKAGQVGGAGSIPGQYVPPSYRDSRERDDMCTLKIMQVNENADENSLRELLFPFAPIPRVKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPKVKE........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 274
45 -18.800[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)  ali follow..  21  12..................................................................................................................................................................................................................................EFEVDEDGDQGIVRLKEKHRKGRGFGSDSNTREAIHSQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVK..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 158
46 -17.500[R] KOG1457 RNA binding protein (contains RRM repeats)  ali follow..  14  13.......................................................................................................................................................................................................................STGTGSGAGSGGALEEEPQNLGFGRGQSCELEAGIHRGTVSVLFVHELKTRPGVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLILTARQPVGFVIFDSRAGAEAAKNALNGIRFDPENLRLEFAKANTKMAKSKLMATPNPSNA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 188
47 -17.200[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)  ali follow..  12  2......................SKTTNTYNRQNWEDAEFP-----ILCQT--LGDN---PYVRMIKERFGKE------------TRPFTIFRWCPGARMR-----FKKTEICQTCARLKNVCQTCLLDLEYGLPIQVRDAALKVADNMPQSDVNKEYYIQNIDAQLQDGDGTEAAGAVGRSLAANEMLSKLARTAPYYKRNRPHICSF------------WVKGECKRGEECPYRHDKPNEPDDPLCEQNIKDRYYGRNDPVAEKDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIALV-PRQQCAFVQYTKRNAAELAAERTNKLVIQGRKVSIKWAHSQAKQGTAAKTDRR............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 316
48 -17.100[R] KOG0151 Predicted splicing regulator, contains RRM, SWAP and RPR domains  ali follow..  14  1.......................................................................................................................................................MVKDEFFLDHPGRKHRSRNTEKKKKPRRRERRMKQINPNDNKLKPDSQGMFPPFVKDQRIRDEERKGKTRNIHFVEELKREQEIRERRNQDRENSRDHNSDNTSSSRFDELPDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMRRERHCGFVAFMNRADGEAAKEKMQGIIVYEYELKIGWGKVVFLPSQ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 258
49 -16.800[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)  ali follow..  17  1..........................................................................................................................................................................................................................................MNPLTKVKLNELNEREVQLGVA-DKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNIKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPK....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 119
50 -16.700[R] KOG2135 Proteins containing the RNA recognition motif  ali follow..  13  345...................................................................................................................................................................NIRGRGGFARGGFTGAINRDNCTLQVAKIPPENTIAKLNEHFATFGTVDNIQVRYNGEDSALVTYASKFDAGKAYKS-PTPVLNNRFIKVFWHNPGGEGSENSKMSSVVIVRGVTDE-LVTDLMAHMEKFGEVFDHSVKDDGLITAVFPFRKTGDALKAMA--DGKVLNGVDLEMELKTERIEEIPSTDTNMSADQLLAAIP...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 705
51 -14.600[R] KOG4208 Nucleolar RNA-binding protein NIFK  ali follow..  11  2........................................................................................................................................................................................................................................................................AAFSRSAGPILSLNP-QEDAELQKEVAQCDTVTRFKRTGNSKGYAFVEFESEDVAKIVTETMNSYLFGERLLECHFMPPEKKMESISKTNHRMSTKGQVLR...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 106
52 -13.800[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)  ali follow..  13  357.......................................................................................................................................FDFDACNEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVGKKTSDKRDS.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 497
53 -13.200[R] KOG1995 Conserved Zn-finger protein  ali follow..  14  259...................................................................................................................................................................EDAATEKVKQCDADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKGNYKGDACLAYEDPSAAHSAGGFFNNYEMRGNKISVTMAEKSAPRAPTFDQSFIILVGNMSFCNAK........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 396
54 -12.300[A] KOG0533 RRM motif-containing protein  ali follow..  15  54....................................................................................................................................................................KDLDAVQNHGISSRGNDSKVIRVNISNLAPTVISSDLEELFGDYR-LSSVSVHGDSLGTGDISL-TKRDAERLVQKFSGVALDGKIMKFAVIDSSNMAGR........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 155
55 -12.200[A] KOG1996 mRNA splicing factor  ali follow..  12  190...................................................................................................................................................................RDFPYEEDSRPRSQSSKAAIPPPVYEEPDRPRSPTGPSNSFLANMGGTVAHKIMQK---YGFREGQGLGKHEQGLSTALSVEKTSKRGGKI-SDSNPLTEILKCPTKVVLLRNMAGEVDEDETKEECEKYGKVGKCGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQ................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 404
56 -11.800[TR] KOG4019 Calcineurin-mediated signaling pathway inhibitor DSCR1  ali follow..  13  2...............................................................................................................................................................................EEVDLQDLPSATIACHLDPRVFVAKFESLFRTYDKDITFQYF-KSFKRVRINFSNPFSAADARLQLHKTEFLGKEMKLYFAQTLHIGSSHPNPDKQFLIS--ATPVINYDLLYAISKLGPGEKYELHAATDTTPSVVVHVCESDQEKEEEEEMERMRRPKPKI................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 183
57 -11.600[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  7  8..........................................................................................................................................................................................LYAEDLDKDFAGQA-GDGVDLYDDIGGPTESAASGG------TPSADGAAGPGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGDLQEVRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQFESLQKTRPVPPPQQNGPPRGPAPPSMGGGPMPTGHPGGPQGGGPPGHPPRGMNSIMQPGQYRPQHMSQVPQVGGPNSGPPRMQPPMHPQGGLMGNQQPPPRYPSAQGQWPGQRPGGPRPGPPNGPPQRPMFQGGPMGMPVRGPAGPDWRRPPMHGGFPPQGPPRGLPPAPGPGGPHGAPAPHVNPAFFNQPGGPAQHPGMGGPPHGAPGPQPGMNMPPQQGMNMTPQHGPPPQFAQHGPRGPWPPPQGKPPGPFPDPQQMGPQLTEVEFEEVMSRNRTVSSSAIARAVSDAAAGEYSSAIETLVTAISLIKQSKDERCKILISSLQDT------LHGIEAKSYNR............................................................................................................. 521
58 -11.600[R] COG2940 Proteins containing SET domain  ali follow..  10  239...............................................................................................................................................................................RYSLGPPPSCEIVVYPAQDNIQDISIKNYFKKYGEISHFEASALPLHVYLIKYASAKAAFSAVRKHESSFIMGFKFEVILKRIPYDLLGVVNNRPVLHVSKIFVAKHRFCVEDFKYKLRGYRCAKFIDHPTGI-YIIFNDIAHAQTCSNAESGNLTIMSRSRRIPILIKFHLILPRFQNRTRFNKSSSSSNSTNVPIKYESKEEFIEATAKQILKDLEKTLHVDIKKRLIGPTVFDALDHANFPELLAKRELKEKEKRQQIASKIAEDELKRKEEAKRDFDLFGLYGGYAKSNKRNLKRHNSLALDHTSLKRKKLSNGIKPMAHLLNEETDSKETTPLNDEGITRVSKEHDEEDENMTSSSSEEEEEEAPDKKFKSESEPTTPESDHLHGIKPLVPDQNGSSDVLDASSMYKPTATEIPEPVYPPTPELCQREESSNKEPSDSVPQEVSSSRDNRASNRRFQQDIEAQKAAIGTESELLSLNQLNKRKKPRSAIALDSIA-EYVGERIRQPVAEMREKRYL--YL-IDATKKGGIA--FINHCDPNCTAKIIK-VGGRR-------RI--VIYADIAASEELTYDYK------------ER--------EKDDEERLP-----APNC. 1075
59 -11.500[R] KOG1855 Predicted RNA-binding protein  ali follow..  17  285...........................................................................................................................................................................................ITDAVEFYFSNESIKDAF-----LLK-HVRRNKEGFVVSSFKRVRQGDAVRRKSRKIELNDVGTKVRRIEPLPS-FDETMPSRTIVACDLPLDLTIEKVSDLFSPCGEIALIRILKPGKECALVEYLESSSARDARHLNG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 450
60 -11.200[A] KOG4213 RNA-binding protein La  ali follow..  9  2.................................................................AENGDNEKMAALEAKICHQIE--YFGDFNLPRDKFLKEQIKLDEGWVPLEIMIK-------FNRLNRLTTDFNVIVEALSKSKAELMEISE--DKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKV-FSGDLDDQTCREDLHILFSNHGEIKWI-DFVRGAKEGIILFKEKAKEALGKAKDGNLQLRNKEVTWEVLEGEVEKE....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 313
61 -11.200[K] KOG2068 MOT2 transcription factor  ali follow..  14  2.................................................................................................................................................................................SDYGEKTCPLCAEEM--DLTDQQLKPCKCGYQHIMDMAEKDQSEG---IVGMTVDQERLASEGNMDRKKIQKSKPKSSDGRKPLTSVRVVQRNLVYIVGLPLNLADEDLKEYFGQYGKVLKVQQFPNNTCSVYITYGKEEEAIRCIQSVHGFILDGKALKACFGTTK........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 196
62 -11.000[K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)  ali follow..  15  10.....................................................................................................................................................................................................................................TDGISEEKESKETMKSQKADRKKKKLKEKLLKEASKADNRGVCYLSRIPPHMDHVRLRHILAQYGELGRIGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQIGGKKKS.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 143
63 -10.800[T] KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains  ali follow..  11  82..............DSQASYMNGVVTGLLTVKEGQRMRFSQSFFLVPLNGSYFVLNDVFRYVADEIVEPEANKKEVEEVIPQVVQPTEQVDEVAEPVTIPT-HPKTQEDNVVNDKSNGVDAPKKSFAHIVQDLAQNGATFNAKASPAKPKSKPVTKPSAARESKAPAPVSEHSSAATIDQQAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIQVRSNCFGFVTFASAEAVKLVLQAHKESRIGNRRVSIEEKRGNNDNGRPAMRNG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 369
64 -10.700[D] COG5279 Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain  ali follow..  6  14..........................................................................................................................................................................................................................................................VKARYGWSGQTKGDLGFLEGDIMVTRIAGS------------YGKLLRNKKCSGYFPHNFVILLEERLNSSTENGRQPSKIVESFEKSNKVVIPPVPSRYSDERPRPKKKLSSSMPNSPKKPVDSLTKARKAKSKEMVNEKNIYNTQSSRHHNNSAPNLPLASHSKPQVRNFEESMNNPLPPLPPLPDLDNMRKTDKRAPKKSYSANDLHMARSSREYNYYKDNQKFYDGFIPEKRYSLEEDSISSGLFSNSQYLNDSACSSENSFALMSDFSATSAGSFARHKYAQSFSDSLQRSQNANGCSTKINDSQEFGDSNASSRNGKMGDILRKIIIPKRNTNIYSSSVSSPKSPKAYPKLPDIQNLNLSATPDEARDWIAVKCHLNRARTLTKYDKHPRYMRALAELNIEYI----DKMTWKRCIRDGTMTLDSWAQTTFSARYSTVLEYIFC-LYRKHCTPYELTWL--ITCEIVIGFLKTPSNHCWLRILVNRFIDVILGN-FVNNRKIKKAENSYFLMA-----PLEMIYTH---------IPPREFEQHI.. 626
65 -9.890[J] KOG2314 Translation initiation factor 3, subunit b (eIF-3b)  ali follow..  11  37......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ESDDESVYQDDQSEFDTGFGNIIVVDHLPEKFEKGVVKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLD--KSHIFAVNMFDDFDRLMNVKEEWEPPQERPYVPG............................... 166
66 -9.750[A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)  ali follow..  22  64.......................................................................................................................................................................................................................................ERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTR......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 199
67 -9.600[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins  ali follow..  15  3......................................................................................................................................................................................................EHLASIFGT------------EKDRVNCPFYFKIGACR--SRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIEDFFEDLFEELGKFGEIESLNIADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 152
68 -9.570[A] KOG4676 Splicing factor, arginine/serine-rich  ali follow..  19  23...................................................................................................................................................................................................................................................................GGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRPLPVSSRVCFVKFHDPDSAVVAQ-HLTNTVFVDRALIVVPYAE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 112
69 -9.330[D] COG5105 Mitotic inducer, protein phosphatase  ali follow..  17  410..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LKRI----TQETLLGLLDGKFKDIFDKCII-ID----CRFEYEYVNLNTKQAIVDFLSKPLTHR---FH----CE--HSAHRA-PHLALHFRNTDRRMNSHRY-PFLYYPEHG---GYKSFY---ENHKNRC. 532
70 -9.270[K] COG5175 Transcriptional repressor  ali follow..  12  8...............................................................................................................................................................ENLQAIHNALSNFDTSFLSEDEEDYCPLCIEPM--DITDKNFFP---PCGQINNIRQNPELNG---VRYVTLSPEELKMERAKLARKEKERKHREKERKENEYTNRKHQKNLVYVVGINPPVPYEEVEKYFGQYGKINKIVVNRKTPH-VYITFGSKDDAARCIAQVDGTYMDGRLIKAAYGTTK........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 233
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;