Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: [K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B), from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710    .  720    .  730    .  740    .  750    .  760    .  770    .  780    .  790    .  800    .  810    .  820    .  830    .  840    .  850    .  860    .  870    .  880    .  890    .  900    .  910    .
# Score Template Links and tools%idFirst MAETLSGLGDSGAAGPAALSSASSETGTRRLSDLRVIDLRADVRKRNVDSSGNKSVLMERLKKAIEDEGGNPDEIEITSEGNKKTSKRSSKGRKPEEEGVEDNGLEENSGDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVEDDDADNLQESLSDSRELVEGEMKELPEQLQEHAIEDKETINNLDTSSSDFTILQEIEEPSLEPENEKILDILGETCKSEPVKEESSELEQPFAQDTSSVGPDRKLAEEEDLFDSAHPEEGDLDLASESTAHAQSSKADSLLAVVKREPAEQPGDGERTDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPSPEARDSKEDGRKFDFDACNEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSTNLKRDDKCDRKDDAKKGDDGSGEKSKDQDDQKPGPSERSRATKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASKSQDRKSASREKRSVVSFDKVKEPRKSRDSESHSRVRERSEREQRMQAQWEREERERLEIARERLAFQRQRLERERMERERLERERMHVEHERRREQERIHREREELRRQQELRYEQERRPAVRRPYDLDRRDDAYWPEAKRAGLDERYHSDFNRQERFHDFDHRDRGRYPDHSVDRREGSRSMMGEREGQHYPERHGGPERHGRDSRDGWGGYGSDKRMSEGRGLPPPPRRDWGDHGRREDDRSWQGTADGGMMDRDHKRWQGGERSMSGHSGPGHMMNRGGMSGRGSFAPGGASRGHPIPHGGMQGGFGGQSRGSRPSDARFTRRYLast
1 -151.000[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)  ali  100  1MAETLSGLGDSGAAGPAALSSASSETGTRRLSDLRVIDLRADVRKRNVDSSGNKSVLMERLKKAIEDEGGNPDEIEITSEGNKKTSKRSSKGRKPEEEGVEDNGLEENSGDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVEDDDADNLQESLSDSRELVEGEMKELPEQLQEHAIEDKETINNLDTSSSDFTILQEIEEPSLEPENEKILDILGETCKSEPVKEESSELEQPFAQDTSSVGPDRKLAEEEDLFDSAHPEEGDLDLASESTAHAQSSKADSLLAVVKREPAEQPGDGERTDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPSPEARDSKEDGRKFDFDACNEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSTNLKRDDKCDRKDDAKKGDDGSGEKSKDQDDQKPGPSERSRATKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASKSQDRKSASREKRSVVSFDKVKEPRKSRDSESHSRVRERSEREQRMQAQWEREERERLEIARERLAFQRQRLERERMERERLERERMHVEHERRREQERIHREREELRRQQELRYEQERRPAVRRPYDLDRRDDAYWPEAKRAGLDERYHSDFNRQERFHDFDHRDRGRYPDHSVDRREGSRSMMGEREGQHYPERHGGPERHGRDSRDGWGGYGSDKRMSEGRGLPPPPRRDWGDHGRREDDRSWQGTADGGMMDRDHKRWQGGERSMSGHSGPGHMMNRGGMSGRGSFAPGGASRGHPIPHGGMQGGFGGQSRGSRPSDARFTRRY 915
2 -37.500[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)  ali follow..  16  2.......................................................................................................................................................................................................................................................................................................EKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANG................................................................................................................................................................................................................................................................................................................................................................................................................................ 203
3 -32.000[A] KOG4207 Predicted splicing factor, SR protein superfamily  ali follow..  12  2.........................................................................................................................................................................................................................................................................................................................................................................................................SCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEPHTKAPRGFAFVRFHDRSDAQDAEAAMDGAVLDERELRVRMARYGRRDLPRSSQEEPRGRSWGGRYGRRSGSPRGRHRSQSRGPSYSRSRSRSHYGGSRYSLSIYRRSRYSRSPYRRSHYRGSRYGRSPYSRSYSRHHYSRSPYRESRYRRSPYIRSSRSRSPYRRSHSKSGSHSASPSTSKSSS.................................................................................................................................................................................................................................................................................................. 233
4 -30.800[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)  ali follow..  12  5......................................................................................................................................................................................................................................................................................................................................................................................TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTPSPSLSESSEDEKPTKKHKKDKKEKKKKKKEKEKADREVQAEQPSSSSPRRKTVKEKDDTGPKKHSSKNSERAQKSEPREGQKLPKSRTAYSGGAEDLERELKKEKPKHEHKSSSRREAREEKTRIRDRGRLQMHILAGIMGVLKGVVIEVEVGAEINPIGIKGPDAPGRGVLRIPVTVGVTEDFSCTVD....................................................................................................................................................................................................................... 330
5 -28.000[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)  ali follow..  17  2...............................................................................................................................................................................................................................................................................................................................................................................................AYQPVPGSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD-PTPIIDGRRANCNLASLGRPRPPLPYAV.................................................................................................................................................................................................................................................................................................................................................................................................................................... 112
6 -27.500[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15  ali follow..  19  2................................................................................................................................................................................................................................................................................................................................................................................................................SMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRRNQSYEYTERTDRYMEQQNAHES..................................................................................................................................................................................................................................................................................................................................................................................................................... 111
7 -26.500[A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)  ali follow..  9  60...........................................................................................................................................................................................................................................................................................................................................................................ETRQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSNGLDARPGRGFGAERRRSRSRERRDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRERERDRDREREKKKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKERKPDFRDMDVIKIKEEPVDDGYPTFDYQNATIKREIDDEDEEKYRPPPAHHNMFSVPPPPILGRGNASTNPNPDNGQQSSGDPSWWRQ................................................................................................................................................................... 448
8 -26.400[R] KOG4454 RNA binding protein (RRM superfamily)  ali follow..  10  2..........................................................................................................................................................................................................................................................................................................................................................................................................EIKPTPSPPEERTIYVANFSEEVDEELLEELFIQAGPVVKVILRDV--RDSNAKFALVEFEDELSVLFAIELMNGVRLFNQELQVKPRNGTNQEELYKRKKGEIEERVRSVAAPDRDGRRDSYRDDRNRNRNGNNRDSWQQQQPPRHHRQYDPLPPPPPPPLMGGSGGHWRSGGERGPPQYSTPQMLPHQHFVNQMMQQQINRSAPPYNGRHQNSTPHRHHDRHGYDRSSSRHHRNDDRRRSAHFLDIRKFQAPPTSWAFGNFQCFFWNLFSKITYLQE.................................................................................................................................................................................................................................................. 278
9 -26.300[A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain  ali follow..  12  3..............................VRRLKVNELREELQRRGLDTRGLKTELAERLQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 209
10 -26.200[R] KOG0226 RNA-binding proteins  ali follow..  14  147.............................................................................................................................................................................................................................................................................................................................................................LRTQALQSDIDKMNFKKQTDPFKKKIKEQQAKKKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKERNIDVIKQKRKQKKE.............................................................................................................................................................................................................................................................................................................................................................................................................................. 298
11 -25.700[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)  ali follow..  10  2..............NGTLDHPDQPDLDAIKM----VGQVPRTWSEKDLEQYG--NVLRDRSQNPPQSKG-----VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRK--SKKCTENDIRVMFSSFGQIEECRILRGPDGLSR---------TTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKP......................................................................................................................................................................................................................................................................................................................................................................................................................................... 481
12 -24.500[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19  ali follow..  25  24..............................................................................................................................................................................................................................................................................................................................................................................WVYRFQASSMAFCTKLGGHWKQGVNVPVSSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLPLSLDE..................................................................................................................................................................................................................................................................................................................................................................................................................................... 151
13 -24.500[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)  ali follow..  10  2.....................................................................................................................................................................................................................................................................................................................................................................................................................SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARR-----PPGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPYRARDEVPYANGNGLKDVRRSRS...................................................................................................................................................................................................................................................................................................................... 196
14 -23.800[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)  ali follow..  13  6..................................................................................................................................................................................................................................................................................................................................................DIDNAEEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKSEKRRR................................................................................................................................................................................................................................................................................................................................................................................................................................. 165
15 -23.700[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)  ali follow..  20  160................................................................................................................................................................................................................................................................................................................................................................APTDVFIDKPPTGESSTMSAAPGTGKAAYVPPSMRAGADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRPT............................................................................................................................................................................................................................................................................................................................................................................................................................................ 294
16 -23.500[D] KOG2186 Cell growth-regulating nucleolar protein  ali follow..  10  8.....................................DCGENLKKPRLPRH--TATKFSCIDCGNMFGQVSVHYHNQCITEAEKYGPMVRSNGESSKQKHDFDINAELFNSQQEKANEVADMDYSKQQSEHPAVDKNNLTQQPDLDIYVGLSNDYP-DINATSEQTLLAHANGKKHRVKVERFDAEQQKRQSTQHSTVDKKDYSKQQIEVDINVGLSNCYPWFCSLCNVKATCQQNLLSHANGRKHRENVELFDATQQQQLEKTTVDKKDTTVNASDGNSEQKKVDLLVSSGVANGYSQAHKKRKLETCDETWKREVVQAEEAKGGGEQKSESKKAKKQDKEKKRKKDKKQTKSDSDFEHDKEDIKQLLVAYSKEELVNLIYKTAEKGSRLISAILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKR-MYNRIVVCNLASEKPGKAGKEQD..................................................................................................................................................................................................................................................................................................................................................................................................................................... 495
17 -23.400[R] KOG2295 C2H2 Zn-finger protein  ali follow..  7  177..................................KYTEYKTDFKRQQL-----NEFFVAHKDEEWFKNKYHPEDSVKRSEEQRGFLQRRTDVFMELLENGTIGSVKVDSSQADALIRVLDTCVIKLEGGTDEDLKVLDEKPKDPVVYERKAEQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQK----------------------------TEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNLAPSITRSEIEAVCNRFSGYLRVAIADPLVERRWYRRGWITFMRDVNIKEICWGLNNQRLRDCEMGAIVNRD............................................................................................................................................................................................................................................................................................................................................................................................................................................... 593
18 -23.200[D] KOG4259 Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain  ali follow..  11  2..........................PESDVTKMKVADLKRELKLRGLAVNGNKTELQDRLQTALLEGDLSLED---AIADAIDDDDVSFTDEDEHKLLGDENDDELLKSPVSTPTTVAIPDLLAEEKTSSAPDAAAPTKKIVLKRNNSQQSTGTVASTGTTPSKENEAPAAAASDSTGETPTKKHKPIVVGPKTEGEKPSGDKKLNQLTAQERLELRAKKFGITPPAVANTATAVAVAINKSSSASITANKGNKETEEQQKEALKKRAERFGFVVPDKAPTSKADDRLQKRKERFGAGAVSAATTTPTTTESKDAWSEKARARLE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 299
19 -23.200[R] COG0724 RNA-binding proteins (RRM domain)  ali follow..  15  138................................................................................................................................................................................................................................................................................................................................................................TNEGGVEAASEEKAGQVGGAGSIPGQYVPPSRRAGARDPSSDAYRDSRERDDMCTLKIMQVNENADENSLRELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPKVKE........................................................................................................................................................................................................................................................................................................................................................................................................................................... 274
20 -23.100[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)  ali follow..  11  2...................................................................................................................................................................................................................................................................................................SGARRDNRRSNGRDDSSRVAKAENDRKPGRENRGGDEKRGNSNNAARSGGGGGGNRGGAERGIAPAQQPYDNNGGHRSGGGGGRSGGGGTSFNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS-------GKGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................ 190
21 -22.600[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)  ali follow..  15  6.....................................................................................................................................................................................................................................................................................................................................................................ATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPRPIQVKPADSESRGGSSCLRQPPSQDRK............................................................................................................................................................................................................................................................................................................................................................................................................................. 153
22 -22.300[A] KOG0131 Splicing factor 3b, subunit 4  ali follow..  25  10......................................................................................................................................................................................................................................................................................................................................................................................................GANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGAN..................................................................................................................................................................................................................................................................................................................................................................................................................................... 113
23 -22.200[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)  ali follow..  12  3......................................................................................................................................................................................................................................................................................................................................................................................................................RVYIGRLPNRASDRDVEHFFRGYGKLSDVIM--------KNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDDLRDAMNKLQGEDLNGRKLKCTDETRDRSRSRSPRRRSRSRSPTRSRSPPARRRSPGSDRSDRKSRSASPKKRSDKRARSESKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSPRSGSAS............................................................................................................................................................................................................................... 280
24 -22.000[R] KOG0110 RNA-binding protein (RRM superfamily)  ali follow..  11  1..............................MSRIIVKQLPKHITEDKLGAQGITDLQLKY-----TPDGKF---VGYSTEEEAQSAIRHFDNT-ESCAALGSEDKPQSWSKYAKDSKKNLDKLKEKEREAAAKAKESEKKKKKDKVDKVDQILSRHKDDPEFQEFLEAHDKSRTLWGNDLGINKNRENEEEDDEEQEESRAARDDSGVDADAGDEDGSGDEADEEEDTDKLAEKPISDLEYMKSLMATTSGEATAKKPKAKADKSNLELFTIKIHNVPYNTKRQEVLKFFKPLKPYSVRLPSKVH-----------------------------KTEKDMAKGMLKNKSFIKGKQVFFSDFTEKNKVTKASKSGQPLAPAAVDAGNAKWKHQQDSLSKEDDISESGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTLDGTDFHGRLLHLLPSKDIEKNPKEDLDENDASLSFKEKKALKLKKNAQKP.............................................................................................................................................................................................................................................................................................................................................................................................................. 475
25 -21.900[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)  ali follow..  15  178.....................................................................................................................................................................................................................................................................................................................................................................EVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGG.................................................................................................................................................................................................................................................................................................................................................................................................................................. 317
26 -21.600[A] KOG4212 RNA-binding protein hnRNP-M  ali follow..  13  585.................................................................................................................................................................................................................................................................................................................................................GANSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFAGSFGGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA.............................................................................................................................................................................................................................................................................................................................................................................................................................................. 730
27 -21.400[R] KOG4733 FOG: RRM domain  ali follow..  19  23..............................................................................................................................................................................................................................................................................................................................................................................QAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTN............................................................................................................................................................................................................................................................................................................................................................................................................................................. 142
28 -21.400[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)  ali follow..  12  19..................................................................................................................................................................................................................................................................................KKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSNRSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMR.......................................................................................................................................................................................................................................................................................................................................................................................................................... 248
29 -21.100[A] KOG4209 Splicing factor RNPS1, SR protein superfamily  ali follow..  11  2.........................................................................................................................................................................................................................................................................................................................................SDNDIIDDDVLNIEDMTGDDADLSAIEGDLNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLTPEEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALA-MTDSLLRGRQIKVDPKRTNKPGMSTTNRPPFRGRGGRGRGN........................................................................................................................................................................................................................................................................................................................................................................................................................ 178
30 -20.900[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)  ali follow..  17  12...................................................................................................................................................................................................................................................................................................................................................................................................DQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGRQYGRGKTGGQVRDEYRTD........................................................................................................................................................................................................................................................................................................................................................................................................................ 131
31 -20.100[K] KOG4210 Nuclear localization sequence binding protein  ali follow..  12  2........................................................................................................................................................................................................................................SETELSKEDAVTKKDNEEQVKKALLDPTKKRKAEDEIEIDLKSSIPLSKKQKRLLRRGKVTLEELNAKYNIDPKSIEEYKEDAEKKKSGASEKDAQGEESTINTPTGDESGEVVKKKKKDENKYGKNVEQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSSSF.......................................................................................................................................................................................................................................................................................................................................................................................................................... 338
32 -19.700[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)  ali follow..  14  2........................................................................................................................................................................................................................................................................................................................................................................................................NKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAKYNLKTPEA................................................................................................................................................................................................................................................................................................................................................................................................................. 120
33 -19.700[T] KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains  ali follow..  10  133.....................................................................................................................................................................................................................................................................ADEIVEPEANKKEVEEVIPQVVQPTEQVDEVAEPVTIPTQQPEAKQTTENTVKKPERAVANGHPKTQEDNVVNDKSNGVDAPKKSFAHIVQDLAQNGATFNAKASPAKPKSKPVTKPSAARESKAPAPVSEHSSAATIDQQAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQKESAIRIGNRRVSIEEKRGNNDNGRPAMRNGGYRNDNGYRNDGYRPRGNGSNGGRGYGRNGSERRGESRNGEAHNGDGKVHQNGTVEASR........................................................................................................................................................................................................................................................................................................................................................................ 428
34 -19.500[A] KOG4676 Splicing factor, arginine/serine-rich  ali follow..  10  33.....................................................................................................................................................................................................................................................................................................................................................................................................................EVIQVTNVSPSASSEQMRTLFGFLGKIDELRLF-DSPLPVSSRVCFVKFHDPDSAVVAQ-HLTNTVFVDRALIVVPYAEPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGDSLRESKVNGDDHHEEDMDMSD....................................................................................................................... 484
35 -19.400[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins  ali follow..  13  79...............................................................................................................................................................................................................................................................................................................................................................................................................................EDFFEDLFEELGKFGEIESLNICDN-LADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKEEGGA......................................................................................................................................................................................................................................................................................... 296
36 -19.300[R] KOG1457 RNA binding protein (contains RRM repeats)  ali follow..  15  51...........................................................................................................................................................................................................................................................................................................................................................................IIQWDHPPPPCHRHHHHHTYPNLLQDTVSVLFVHELKTRPGVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLI----KLTARQPVGFVIFDSRAGAEAAKNALNGIRFDPENLRLEFAKANTKMAKSKLMATPNPSNA............................................................................................................................................................................................................................................................................................................................................................................................................................. 188
37 -19.200[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)  ali follow..  10  508......................................................................................................................................................................................................................................AIRPQKKVSEKPAPAPKSKQDHIQKRTSGGEPIVKKVKGDDGGFKAPLPPSNAKSSSAVSSSNASSTPAPGSFAVQKAAPGTEDARTIFVSNLDFTTTEDEIRQAIEGVASIRFARKANSDLVHRGFAYVVMENDQKAQQALLKDRVPVKGRPMFISANDPEKRVGFKFSTTLEKSKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTH-KDGKPKGIAFVDFDTEASAQKCVASGDKLMLRERELEVALSNPPVKKDKSHGKPAAIGASLEEDGPRKGHAAKLQLVPRAITNKTPQITARLDAMDVSEGTSTSQPLSNDQFRK........................................................................................................................................................................................................................................................................................................................................................................ 831
38 -19.200[A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)  ali follow..  18  9................................................................................................................................................................................................................................................................................................................................................................................EPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN...................................................................................................................................................................................................................................................................................................................................................................................................................................... 133
39 -18.600[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)  ali follow..  15  2.........................................................................................................................................................................................................................................................................................................................................................................................................SGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHG---LVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSD.......................................................................................................................................................................................................................................................................................................................................................................................................................... 110
40 -18.600[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)  ali follow..  18  2............................................................................................................................................................................................................................................................................................................................................................................................................NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN.................................................................................................................................................................................................................................................................................................................................................................................................................................... 100
41 -18.300[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  9  11...................................................................................................................................................................................................................................................................................................................................EDLDKDFAGQAQDEFGGDGVDLYDDIGGPTESAASGGGGGGTPSADGAAGPGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGDLQEVKFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQFESLQKTRPVPPPQQNGPPREEVMSRNRTVSSSAIARAVSDAAAGEYSSAIETLVTAISLIKQSKVAHDERCKILISSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSRERERDRDRERERDGGRSVRPRKSPEPVVAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAGGSMEKPRGQSAWDIIDTDAHWIIKQQTTSIPAPPSSQQN.............................................................................................................................................................. 696
42 -17.800[R] KOG4208 Nucleolar RNA-binding protein NIFK  ali follow..  11  2................................................................................................................................................................................................................................................................................................................................................................................................................AAFSRSAGPILSLNP-QEDAELQKEVAQCDTVTRFRLSRKKRTGNSKGYAFVEFESEDVAKIVTETMNSYLFGERLLECHFMPPEKKMESISKTNHRMSTKGQVLRKKKKKVLGTPD.............................................................................................................................................................................................................................................................................................................................................................................................................. 117
43 -17.500[A] KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1  ali follow..  20  6..............................................................................................................................................................................................................................................................................................................................................................................STGATAVATLRETSPPVDGHEEARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN-REHELDGKKIDPKVAFPKRTQAKLVTKTKK.................................................................................................................................................................................................................................................................................................................................................................................................................................. 135
44 -17.300[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)  ali follow..  16  2...............................................................................................................................................................................................................................................................................................................................................................ESNHKSGDGLSGTQKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCR........................................................................................................................................................................................................................................................................................................................................................................................................................................... 137
45 -16.800[AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)  ali follow..  17  54............................................................................................................................................................................................................................................................................................................................................................................HEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCT................................................................................................................................................................................................................................................................................................................................................................................................................ 204
46 -16.500[R] KOG0118 FOG: RRM domain  ali follow..  12  20..................................................................................................................................................................................................................................................................IQPPPSSPPSSMTSQDSGVSSDDQNHHSRIDQVLRHDQGLYSKIGSHVARSDGVDGGESFKRDMRELQELFSKLNPMAEEFVPPSLNKQGGN-TSAGSFFRNNGFAGTGNGGYGNENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGD--PNSVLRFAFIEFTDEEGAMTALN-LSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCART........................................................................................................................................................................................................................................................................................................................................................................................................................ 271
47 -16.200[A] KOG1190 Polypyrimidine tract-binding protein  ali follow..  14  9...................................................................................................................................................................................................................................................................................................................................................................AVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP.............................................................................................................................................................................................................................................................................................................................................................................................. 182
48 -16.100[A] KOG0533 RRM motif-containing protein  ali follow..  12  16...........................................................................................................................................................................................................................................................................................................................................................SKTRKTTGSIQKKSFGGARRGNTRPTGLPRRSGGSGGWKDLDAVQNHGISSRGNDSKVIRVNISNLAPTVISSDLEELFGDYR-LSSVSVNFN-EHGDSLGTGDISLTK-RDAERLVQKFSGVALDGKIMKFAVIDSSNMAGRVDFGNRSRSSPGRSSRGFQSGPRRNNGKPEDFLRDGVHAGDIKRGGAGRGGFRKGGRGGARDAKPKKTEAELDAE.............................................................................................................................................................................................................................................................................................................................................................. 230
49 -16.000[R] KOG1995 Conserved Zn-finger protein  ali follow..  14  223............................................................................................................................................................................................................................................................................................................................................................GPRGGYGSDAPSTGGRGGRSGGYDGGSAPRRQEASYEDAATEKVKQCDADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGNIKIYTDE-KGNYKGDACLAYEDPSAAHSAGGFFNNYEMRGNKISVTMAEKSAPRAPTFDQS.................................................................................................................................................................................................................................................................................................................................................................................................................................... 382
50 -15.300[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)  ali follow..  12  185........................................................................................................................................................................................................................................................................................................................................................................NEPDDPLCEQNIKDRYYGRNDPVAEKIMKRAASLPTLEPPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIALVPR------QQCAFVQYTKRNAAELAAERTNKLVIQGRKVSIKWAHSQAKQGTAAKTD.................................................................................................................................................................................................................................................................................................................................................................................................................................... 314
51 -15.200[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B  ali follow..  14  3..............................................................................................................................................................................................................................................................................................................................................................................................................TADIPPNQSIYIQNLNERIKKEELKRLFSQFGRILDVVALKTPK---LRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEK....................................................................................................................................................................................................................................................................................................................................................................................................................... 113
52 -15.200[A] KOG0120 Splicing factor U2AF, large subunit (RRM superfamily)  ali follow..  13  171.................................................................................................................................................................................................................................................................................................................................................................................RRPHDYQPMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAAN..................................................................................................................................................................................................................................................................................................................................................................................................................................... 295
53 -13.800[D] KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins  ali follow..  13  136....................................................................................................................................................................................................................................................................................................................................................................DVESQDNHAVDASGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYT-----ACKSRGFVMISYYDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGT.................................................................................................................................................................................................................................................................................................................................................................................................................................. 271
54 -13.600[K] KOG1548 Transcription elongation factor TAT-SF1  ali follow..  9  56...............................................................................................................................................................................................................................................................................................................................................................VTAEATEGKESSNGEDRHTKRLYESTSAEGYPSGSRNKKSKSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRDGTPKGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALR...................................................................................................................................................................................................................................................................................................................................................................................................................... 220
55 -13.600[R] KOG0151 Predicted splicing regulator, contains RRM, SWAP and RPR domains  ali follow..  13  115.............................................................................................................................................................................................................................................................................................................................................................EELKREQEIRERRNQDRENSRDHNSDNTSSSRFDELPDYFDPSGRLGSLDDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMTEEEKRRERHCGFVAFMNRADGEAAKEKMQGIIVYEYELKIGWGKVVF............................................................................................................................................................................................................................................................................................................................................................................................................................................. 254
56 -13.600[K] KOG2068 MOT2 transcription factor  ali follow..  15  71...............................................................................................................................................................................................................................................................................................................................................................................DQERLASEGNMDRKKIQKSKPKSSDGRKPLTSVRVVQRNLVYIVGLPLNLADEDLKEYFGQYGKVLKVSMSRTQQFPNNTCSVYITYGKEEEAIRCIQSVHGFILDGKALKACFGTTKYCHAWLRNVACNNQDCLYLHEVGSQEDSFTKDEIISAHTRVQQITGATNTMQYRSGSMLPPPLDAYTSDSSTGNPIAKVPSSTSVSAPKSSPPSGSSGKST......................................................................................................................................................................................................................................................................................................................................... 297
57 -13.300[J] KOG0129 Predicted RNA-binding protein (RRM superfamily)  ali follow..  7  1..............................MGDFGV------LVQSN---TGNKSAFPVRFHPHLQPPHHHQNA------TPSPAAFINNNTAANGSSAGSAWLFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQGDNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSSTIINEDAS-LSQHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSWMEDSLNRADNDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAKSYFPPKGYAFLLFQDESSVQALIDA---EEDGKLYLCVSSPTIKDKP........................................................................................................................................................................................................................................................................................................................................................................................................................................... 538
58 -13.100[AR] KOG0109 RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains  ali follow..  22  259..........................................................................................................................................................................................................................................................................................................................................................................SVRDKEDQWTVSVQRQLVYRPSTEAGHNNKELPPPLPPRGACPDDEAVHQKPAPGHRAGDPLSFQAVGKVLECDII--------KNYGFVHIEDKTAAEDTIHNLHHYKLHGVNINVEASKNKSKASTK........................................................................................................................................................................................................................................................................................................................................................................................................................................ 380
59 -13.000[R] KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains  ali follow..  8  7............................................................................................................................................................................................NADDDGKRVQNEEGNYDPTDHQRQMEDYYKQYEEQRQVANSFHNTTGRPDLVAMQARLAETEQAIHRLNEEKKQPPPGFPIMTTPATQPEISIPRSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNSRRDDRRSNLSNNDRYSDWNPGVPSNKLAILNMPNDVDNTKITLSLGKCGQDVRTMTKFDKNTKQIRTFAFVEFSNRETAEQWMTDYEGWLTDGRTLAVEYAKGDPAAGSGNKG..................................................................................................................................................................................................................................................................................................................................................................................................................................... 317
60 -12.600[A] KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins  ali follow..  14  4..............................................................................................................................................................................................................................................................................................................................................................................................................GTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRYTREGRPSGEAFVELESEDEVKLALKK-DRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDG.......................................................................................................................................................................................................................................................................................................................................................................................................................... 111
61 -12.400[J] KOG2147 Nucleolar protein involved in 40S ribosome biogenesis  ali follow..  8  16................................ELKFNKSKHDLGRKKGAQVGSRKRAHEQREQTLGVE--------------DRKNKISKIVDKRLGEKDGKSEEEKGAMRFTEERVKNYKRASKFNLTDDGDEEEEVLTHKGKALSDIEKYDKSMISDSDDDEEPGNLGSNMVKVAHFGGGEKTAEEHVREKISREDMISNLIAKTKLARHEKQQQKDELELMTESLDSKYQALMGKMKASFRPTGRQPLEKDDYDKLTITLKTEADARATPADRKLSEEEEALKEKERLETLEAAPDADVDIDAGSKADARKVQAKNSRFEVKFDDEGGLIDEDTVEKSRILKKNLDGSDESDDDEDLEDEEEDLDDLLEDEDELEEDSDDEEAQEAQKVVKKAKKSAPEPAETLPFVFEMPKNYKKESMDLVLERLVKCHHPSLKEGNKKRLNKLFLLCDMSKEELTAESVKEMN............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 457
62 -12.400[O] KOG4275 Predicted E3 ubiquitin ligase  ali follow..  5  44......................QRPLSRTDLLKLKPKDLIFYLQSKHISTEGCKEELVGLVLTHVAQVDRSRGSNASSNSPGRGQANPIDSLKQSCQNFFSNLSDNISDSLASFDSKVTTKPPESRQPEVPTHIFEQPRVSTREIPTYASAVNGGPQHVHVQQQATTTNGGSQSSSSPSTSTQSSNNRDASSSSQAHVAHQEARNEEQEDAQSKSDCECSDEEIMATFSERVSISLKTDTSGRRVNAAAEPSPVDLANVDNGPAGNTAPSPGCSKPGSSSSKADASSQSSFEELGAIGGISDESKANTDTNSSHLDQWQVLEVNRIEAVEETPTTSAADEILEVTLRSRPAVEGDDSEMGESTQALNVNQRPANPSPAFYPAVPQRTKKVTRRRSDG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 420
63 -12.300[S] KOG1043 Ca2+-binding transmembrane protein LETM1/MRS7  ali follow..  10  308..............................VDALSSIDLQSACRARGMRAIGVEERLKEQLVQWLENDKVPPALLLLSRTLYLPEEVSFPDRLKAIVQNLPDGLAETTKQKLTEMEGGQIDHKARIEL-----------------------------------------RSIESAIANEKKDEEKKKKAAEEALKSKEEAEKAKVQEKEKLVDVAAQAIVHELKKDIYDAVASTSSTTEAKEPAAKPSEAKEEKKEDITVDKKDLSHIEEIIVGGPIKEAKHDILGLREKVLEHKEDLMEINSLDGAFAETKIAKRLRHKLNSMIEDVDSMVDKLEDEKRNIREMLIDPTVENSVDLKKEREVRIQDVIDSLAKLKESKGEQADDGEQRERIEALLKTIDEDSDGI----------VDKQLVLEVIELLEKHTDVHV------------------SAAQMASMIGTLKKEDVAGLTEEIRKVQSGNYQMPILPTGPSSADAFNQPQGVYTASKQVPARSEQEGVEQKQQVENGPVGIPDVDTKVTSTLQQNSSKTSSSSTTKSTSDSKSA......................................................................................................................................................................................................................................................................................................................................................... 784
64 -12.200[U] KOG0946 ER-Golgi vesicle-tethering protein p115  ali follow..  9  522LTGQIAENLGEEEQLVQGLCASLESYMKEKLKQLKLGFISKH-QKPQPNFPSPEYMIFDVITKAIYKSEEDKKEEEVKKTLEQHDNIVTHYKNMIREQDLQLEELRQQVSTLKCQNEQLQTAVTQQVSQIQQHKDQYNLLKIQLGKDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSVEVQGETETIIATKTTDVEGRLSALLQETKELKNEIKALSEERTAIKEQLDSSNSTIAILQTEKDKLELEITDSKKEQDDLLVLLADQDQKILSLKNKLKDLGHPVEEEDELESGDQEDEDDESEDPGKDLDH...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 961
65 -12.200[R] KOG4307 RNA binding protein RBM12/SWAN  ali follow..  9  431...............PPVNKPMGAAAVEKFYIELT--RLPTDLLRPALTLSSVKTVIIADYATMMRRNGEQGIKIQQSDKKSFDTAIDGIPIPSVSMVPSKEQRSHEDDDKKSRRSRWENTSPIRSPRRSPLRRDNRDRSRSRSPPRRRRRSRSPRRREEHTDPTRWCVQVTNVPFRMKDEELLE-RPAKLTRTFYSDGNASDRWVAEFSSESLMKRSFGIRTLCTGRTLRLRYIDNAKADEILKIEDVYGEGKRQMNEEARLQHEVAEKANPPSFFNAPAATRGSGPMPPLNGTAPLPSGQQNGMNVPPPNGFNGAPMRGHGGGGGPQNFYQNGPNNFNNGPPEQQGQFRGNQGNDGGFRGGFRGGYRGRGGGRGGFQGGSRGDDSQPSQSELMELIKSIGPRGTVLSCNGFPKDVTLEDVVEFFNDY-EPDRNSIIRRGDDGVMTGECMLACQNQENARRASMDLDGQKLRNSVISV.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 945
66 -11.700[U] KOG1091 Ypt/Rab-specific GTPase-activating protein GYP6  ali follow..  11  348VWDEIILADNSARTDEDSRNQNFRIFDCPRG-TL-ILYLRSSL----LSTENATCCLLLNIQKALQALVLDTDMLSALSINGVFDQSNFVPARTKSCSTSPRSPLIIAPESYWEKKWRVLHKAEEEENKICLEKQTPPTQKKKRWLNVTKLFRAVIDLSHHKLGIGERKANSSPVTQSLLEDSSEQLNVDCHVTVNKENIHPQETEENIMEFHSADEESIVSGSSPSEESSFVSLDPTSPVRCSTKIENDSVSSAGSNLLPDEDDKSIVSISEENSSVSSDPISPAIDSNYSGKYLDCCTGSENDKDQQTSVNSPLSVSPHRRNEYPVTQSDEDVSTDKSVGITKEYKLLHGIVQWFRKLKRTLSSEETSHRKASDATKTNDVKIKKNQIGCYSESHPQALSSGDSS--LKNLGQSMLKEAIELVFQQEPCLVPAGLIGNLAKTNLIEKGQVT------ATTALKEL-------RKLS..................................................................................................................................................................................................................................................................................................................................................................................................................................................... 834
67 -11.700[U] KOG1162 Predicted small molecule transporter  ali follow..  10  5...........................SKELEAQLI----PEWKEAFVNYCLLKKQI-KKIKTSRKPKPASHYPIGHHSDFGRSLFDPVRKLARTFSDKLFSNSEKPEILQVRRRRGSSETGDDVDEIYQTELVQLFSEEDEVKV-----------------------------------------------------------------------------------ARLDEELNKVNQFHKPKETEFLERGEILKKQLETLAELKQILSDRKKRNLSGSNSHRSFSSSVRNSDFSAGSPGELSEIQSETSRTDEIIEALERNGVSFINSATRSKTKGGKPKMSLRVDIPDAVAGAEGGIARSIATAMSVLWEELVNNPRSDFTNWKNIQSAEKKIRSAFVELYRGLGLLKTYSSLNMIAFTKIMKKFDKVAGQNASSTYLKVVKRSQ-FISSDKVVRLMDEVESIFTKHFANNDRKKAMKFLKPHQTKDS....................................................................................................................................................................................................................................................................................................................................................................................................................................... 382
68 -11.600[F] KOG1096 Adenosine monophosphate deaminase  ali follow..  7  1MSATVC-----------------------KMTSARLVPL--EITELSTNQ--LKAVYLRKRNPILFNGTQETFSKSLFNFPHFPYRQNVEKCVGRILKNAEDTNGVHFFNPAADNSDEETTAASPSSDVARPNPLDSAREYGMNNLPPDITEAQIETVDSELFDSGPFKKNFAFGNADHSTASPFEISTTPIEVNESRAHKTIEISNREKGAKSRRWSCLARLESQNDGCLSPSSLKSVLDEIQTEPRCKSPQHIDLHTFRDAVDVNYQRMAITGEELSGVPLEDLKTASGHLIEALHLRSKYMERIGNQFPSTTRNFLSGHYPANLPKHRVKNTETTVQTSFNPPDPPKDHWGKNDPLPKYEKIYHLRRNRGVTEICNDDGSIDQQFKNVNVTKEEAMIVDGPLKSFCFRRLSYLENKFQLHVLLNELRELHEQKGVSHRDFYNIRK--HIHAASSMNQKHLLRFIKKK............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 463
69 -11.400[AR] KOG1365 RNA-binding protein Fusilli, contains RRM domain  ali follow..  12  129.....................................................................................................................................................................................................................................................................................................................................................................EIEDDVAIARAILDMDDELLEKTHQFVNIEYQPAPILEDQEVGADGDNVVCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLALK-RHRNFLLSRYIEVYKAGLDEFMHVATGSSTEAMEFVSANA......................................................................................................................................................................................................................................................................................................................................................................................................................... 276
70 -11.200[P] KOG4505 Na+/H+ antiporter  ali follow..  8  364....AGHFGPIGVGALYTCLVARAELEVHSTVPEPNDAIENPEIPNWYCIQVMWPVVCFLVLSSIIVHGSSIAFFMLGKRINTLALSFTRTRDSHFAFNLPRVRQGQSLPIKRVDALRSSANSIASSIRRRHPVNIQEDEDADISTVSLPEAAHLREERAESPRGGHYDAEEFPSEDYESRQPRRSNEEDREEEMNPGDETYLIGEDLVVEDSQGNIISHTSSRDANGPSIDEKLAQGDPKAKSFGRKFRSFLRRSYDTFQRNLHEPDDERQREPTLGHIESSIENHRPRYSRQNSESHLRENSVERRRREQVLTNIGDSESEDDNIPRPGIVPFYNENNESSSDTRNGLLSDNVSESRSRRPSRAPSAAVSSEGSPVEEDNEAQHRPNIRFLELTRAWE................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 759
71 -11.200[K] KOG2821 RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A  ali follow..  9  31............................KKLSTLPIVDI--------LAETGVKTVLVAQWKKLVPVERNAEPD-----EQDFEKSNSRKRPRDALQKEEEMEGDYQETWKATGSRSYSPDHRQKKHRKLSELERPHKVSHGHERRDERKRCHRMSPTYSSDPESSDYGHVQSPPSCTSPHQMYVDHYRSLEEDQEPIVSHQKPGKGHSNAFQDRLGASQERHLGEPHGKGVVSQNKEHKSSHKDKRPVDAKSDEKASVVSREKSHKALSKEENRRPPSGDNAREKPPSSGVKKEKDREGSSLKKKCLPPSEAASDNHLKKPKHRDPEKAKLDKSKQGLDSFDTGKGAGDLLPKVKEKGSNNLKTPEGKVKTNLDRKSLGSLPKVEETDMEDEFEQPTMSFES................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 409
72 -11.200[S] KOG4610 Uncharacterized conserved protein  ali follow..  7  310...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RLYVVNAEFWKNRRESRMAKSRQFQSRRKVQDADQNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSSSSSSSDSS.......................................................................................................................................................................................................... 523
73 -11.100[O] KOG0415 Predicted peptidyl prolyl cis-trans isomerase  ali follow..  13  176......................................................................................................................................................................................................................................................................................................................................................PRSPSPTYEMLTDQIALDEKEDEDEGKTAEEIAEELQQREMAEQAQILEMVGDLKDADEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFSQSVSQNYKYKPKSQQQEAPKRRQSPQRRPEVKRSHQRSPSPRRRRSPSPKKDKKRDYRREPARRRR............................................................................................................................................................................................................................................................................................................................................................................... 381
74 -10.900[R] KOG4264 Nucleo-cytoplasmic protein MLN51  ali follow..  9  2..................................................................................................................................................................................................................................ADRRRQRASQDTEDEESGASGSDSGGSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPA---YI-----------------RKGL--------DLRGQTQE-WEHDKFREDEQAPKSRQEL--IALYGYDIRSAHNPDDIKPRRIRKPRYGSPPQRDPNWNGERLNKSHRHQGLGGTLPPRTFINRNAAGTGRMSAPRNYSRSGGFKEGRAGFRPVEAGGQHGGRSGETVKHEISYRSRRLEQTSVRDPSPEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEKKSYSRARRTR............................................................................................................................................................................................................................................................................... 411
75 -10.900[A] KOG2217 U4/U6.U5 snRNP associated protein  ali follow..  11  13...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DKKNRHRSRSSERPRRVTEDEDVTLDLTDDSSSRHRHHKHKKHKEHRHKHHKQKERERANEVISLEESDSDSSDCVEVPVQAQVQAQAKLRDARESSNRDKERDSGRDRELLRERERERDRERERDRDREKEREREREKERLREREEREREREKERIREREKERLRERERERERERVRELTAPPPPQISKHAEYESRREREIERERDARKRSGRERERERNRERSRSQSPASSSRKPATKEREPSSRSFSPIPENGAGDVLSITET.......................................................................................................................................................................... 278
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.