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Query: [R] KOG4812 Golgi-associated protein/Nedd4 WW domain-binding protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDHHQPGTGRYQVLLNEEDNSESSAIEQPPTSNPAPQIVQAASSAPALETDSSPPPYSSITVEVPTTSDTEVYGEFYPVPPPYSVATSLPTYDEAEKAKAAAMAAAAAETSQRIQEEECPPRDDFSDADQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSLIKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRYFFLLLast
1 -92.100[R] KOG4812 Golgi-associated protein/Nedd4 WW domain-binding protein  ali  100  1MDHHQPGTGRYQVLLNEEDNSESSAIEQPPTSNPAPQIVQAASSAPALETDSSPPPYSSITVEVPTTSDTEVYGEFYPVPPPYSVATSLPTYDEAEKAKAAAMAAAAAETSQRIQEEECPPRDDFSDADQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSLIKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRYFFLL 242
2 -11.900[S] COG5373 Predicted membrane protein  ali follow..  10  21...............................RRSAERLDREIESLKAEIARLAKEGMGEPGPDLATGRPSEAGVPSVAGTEATADGPWSRAREGAGTSHDESAAGRESGDGAIDGPVAPSAAAARAESLESRIGGR----WPVWVGGLALALGFLVQYSIEASPAVRLTLAAIFGLALGVAGEVIRRRVPAIADRFRNAMIPGVLTAAGAVTLFGVVYA---AYGIYDFIGTGAAFVLLALV 230
3 -11.200[S] COG2149 Predicted membrane protein  ali follow..  11  16....................................................................................................................................LANERTFLAWIRTSLGFLAAGVGLDQLAPDFATPVIRELLAL-----------------------------LLCLFAGGLAIYGYLRWLRNEKAMRLKEDLPYTHSLLII 96
4 -11.000[S] KOG4517 Uncharacterized conserved protein  ali follow..  13  2............................................DHKPLLQKRPLAYNLESVQVNYACCLHSYGA----NPASPRQGPTPTSSQGYPPATPGSTTSTARPPPGTLPTPSWSWEAVPSAGSGVLEDCFSSLGIFLVIILFP-FGFICRFALRKRRCPNCGETFA..................................................................... 125
5 -9.340[S] COG1714 Predicted membrane protein/domain  ali follow..  11  1....................................................................................MSFLTLKGNKMIIENQKDAEFSSAFKPSQLAQASRFKRWLASMINGLVLWVMAGLG--FALGDFAGVVGMIVYAGFQLYFMKTYGQTMALGLRVFN---YHTNQPVEFGKYIGREIIDILLAWTSFLLIISGIVALVRDDR--RSLTDLVAGTIVL.. 152
6 -9.170[R] COG4827 Predicted transporter  ali follow..  12  66......................................................................................................................................SAMGMGIHVLVSLLLIGAGIAVSCMLLSQSLSKIGFLVGIAFFIAVVASSFLFRFGKVRCGKTPETMGSAMMLLGIYYLLGALLAYMKSKQMNMAPMQTGESGLFPLL 210
7 -9.140[C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3  ali follow..  10  2.......................................................................................................AHTPAQSVDGAEPPVFYLKEDHHPENGTSIG-----FWLYLMSDCLIFAVLFATYAVLGRSYAKLVAINTGFLLLSSITYGFAMLEMEKQKVKSTLIWLGITGLFGLAFLAVELYEFHHLIEEGAGPQRSAFLSAFFAL 146
8 -9.060[V] COG4767 Glycopeptide antibiotics resistance protein  ali follow..  13  98....................................................................................................................................VANFIMFV-----------LGILLPLCFPKLTWKSISFIATVGIEFAQLLQDLIYQAPFKFVDIDDVILNFSGGIFGYIVYVIIRPLLRKMNLCPIVEKNS......... 191
9 -9.050[R] COG1279 Lysine efflux permease  ali follow..  15  4.........................................................................................................................................YYFQGLALGAAMILLGPQNAFVMNQGIRRQYHIMIALLCAISDLVLICAGIFGGSALLMQSPWLLALVTWGGVFLLWYGFGAFKTAMSSNIELASAEVLK..... 105
10 -9.050[S] KOG2357 Uncharacterized conserved protein  ali follow..  11  20.HHVLASSSSDFEGFDAEDDDVSEDSTELHHSLRPPLLTQSESTVLDLDPSPDSDSTPASKSDPPTQTVKPSSSISFDYWDEDEFEGLPEDEKSTESPVFSDDASSPADPQTPDLESASETPDTDIPKKMQSYTVEIVCVSILIGYAINYFTGKRENENLALAWASKFGLKDTI-----NFSLLGVGEGEDSPLLLKEATNVFKFYASG----CHGLLATLELKSRHDLIS........... 246
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.