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Query: [P] COG0004 Ammonia permease, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFQKILIIGVSTLLLLTSPIMGNAWAQVPGTTPPADTGDTAFMLISAALVLLMTPGLAFFYGGFVRSRNILNTLMMSFVLMAIVGVTWVLWGYSLSFAPGLPFIGGLQWFGLNGVGLETTGYLQGSEPANVVSYAGTIPHQAYMIYQAMFAIITPALISGAIAERMSFRAYCLFVLLWSTFIYTPLAHMVWAKGGFLGLYGGLGALDFAGGTVVHISSGVSALVAAIVLGPRKTHPDRLSPPHNVTFILLGAGLLWFGWFGFNAGSALSVASSTSGSFITNPATTAFVATNTSAAAGALMWLILEGVLRGKPTAVGAATGAVAGLVGITPAAGFVTPLASILIGFITAFVCFYAVSFKHKLNVDDALDTYPVHGVGGTVGAILTAFFATAEVNSGGKNGVLKGNFGELGVELAAIVIAYVIAAVGTWIILKIIDATVGLRVKEEAEYQGLDISEHGEEAYNSEFSDRIVPLast
1 -5.940IDP92565 nonstructural protein 1, partial [Dengue virus 2] AAA66406 [Dengue virus 2]  ali follow..  14  28..........................PSLRTTTASGKLITEWCCSCTLPPLRYRGEDGCWYGMEIRLKEKEENLVNSLVTAGHGQIDNFSLG------------------------------------------------------------VLGMALFLEEMLRTRVGTKHAILLVAVSFVTLITGNMSFRDLGRVMVMVGATMTDDIGMGVTYL-----ALLAAFKVRPTAGLLLRKLTSKELMMTTIGIVLL----------SQSTIPETILELTDALALGMMVLKMVRKMEKYQLAVTIMAILCVPNAVILQNAWKVSCTILAVSQQKADWIPLALTIKGLNPTAIFLTTLSRTNKKRLNEAIMAV------GMVSILASSLLKNDI--------------PMTGPLVAGGLLTVCYVLTGRSADLE-LERAADVKWEDQAEISG..................... 371
2 -5.150IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]  ali follow..  12  71............................................IDPHLFLFLFLPTLIFESAFAMEVHLFRRMFTQIVILAVPGLMLWLTAELVAW---------------------------------VLPEHWQWSWALCLMFGALISATDPVAVVALLKEETLIEGESLLNDGTAIVFFSLFYGWVLMEFSNPGEAITAPPWQAVAQFFVVVFVG---LAVGLILGGLCILWIDRVFNDPMIEISL---TIAAAYSAFFISENFHVSGVVAVVTLAIMFA-SVGRTRISPEVAGFLHHFWEMMAHMANTLIFLLVGILVAIRVPLDDKEAWLALFVLYL-AIRACSITVFMPILKRIGIGITYEKAVVLCWGGLRGAVSLALVASSDIIPKQIGDHV----------LFLCAGIVVLTILFNGSTMGHVLKWLNLSSLPPGKQATVDKAQH............... 445
3 -4.920IDP00194 putative membrane protein YPO0983 [Yersinia pestis CO92]  ali follow..  12  115....................................................................................................................................................QILLVITICVFAPISEEIIFRGFLLLAVVITSLLFALV-HTQYLYPATFVSLFVFSAISLLMPMVLHSANNIASVAWVLTLS................................................................................................................................................................................................................................................ 216
4 -4.680IDP01207 D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) BA_2610 [Bacillus anthracis str. Ames]  ali follow..  10  3.............................................................................................................................................IGVIMGGVSSEKQVSIMTGEMIANLDKNKYEIVPITLNE-FALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILGIETPDWIELTKMEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEWDS----------VVIEKYIKGEEITCSIFDGKQLPIISIRHAAEFFDYNAKYDDASTIEEVIELPAELKERVN------SLACYKALKCSVYARVDMMVKDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSLRV................................... 298
5 -4.540IDP06355 hypoxanthine-guanine phosphoribosyltransferase [Bacteroides thetaiotaomicron VPI-5482] NP_813297 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  10  41....................................................................................................................................................................................................................................................................................................................................................LFLSVLNGSFMFTA-DLLKHITIPCEISFVKLASYQGVTSTGVIKEVIGLNEDIAGRTVVIVEDIVDTGLTMQRLLDTLGTRNPEAIHIASLLVKPEKLKVNLNIEYVAMEIPNDFIVGY.......... 159
6 -4.510IDP92124 long-chain-fatty-acid-CoA ligase, putative [Toxoplasma gondii ME49] TGME49_110150 [Toxoplasma gondii ME49]  ali follow..  12  375................................................................................................................................................VFTIVYTSGTTGNPKGVMLTNRNWVAVIRALHIQVHICYLPLSH-VFERVIEYAALAHGVRIAFFSRKRELIPDDWRAAQPSLVLMPKL--ATTLLEKIEARLNAQPLVKRLLVGFAVSRKLRSPSKGSQPSFLYDAVLGGSRIMRERIFGSADNMKFAACGGGKLDPAVQQKLEKYLGGMTETAGAGSWQAYRGDDAYDSVGGPTACMEVKVRSWESYERPQGELLVRG-----DNIFAGYFRQKELTAESKPWLLTGDVVEIQPN-----------------SMNIIDRKKSLIKLAQGEYLQTEKLEG............... 697
7 -4.470IDP06353 hypoxanthine-guanine-xanthine phosphoribosyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] YP_003341 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130]  ali follow..  12  39....................................................................................................................................................................................................................................................................................................................................................IFICVLKGGVYFFT-DLTREIPFSVEINFVQARSYSGTVSTGKIELLKDIDIDLSDRHVIIVEDILDTGFTLQYLVRHIFTRNPASLEIVTLLLKERKDTLEFPVKYIGWRIPDEFLVGY.......... 157
8 -4.430IDP04202 putative stage IV sporulation protein [Clostridium perfringens ATCC 13124] CPF_2277 [Clostridium perfringens ATCC 13124]  ali follow..  11  79.................................................................................................................................................................FLSRAKKSISIFVGVLIFLVGLYIYSGFIWR-------------IDIETKKNIAPFEIRTMLND---FDIKPGVKKSSVNVYGLERKLENGH---IMWVNAR-GGTLKIKVEEKVSPKIKEENENKEFKNIVASMDGEIKRIY----------------TTSGTAVVKEG-DVVKKGDILIIPQ-----------------QGIEGGEYEVDAEGEVTANT........................................................................................ 249
9 -4.310IDP95330 hypothetical protein [Vibrio cholerae] AHX36786 [Vibrio cholerae]  ali follow..  10  674...QFARYVYSAEAKVDHELIKADSSTLVKV-----ELKAGLTLASAERCFTITGALPLDIRYRVRESNERRIKNIGTAVLVIEGKVYGVLGASLKLGTELHIGNIEESRAGFGSQQVKPLGIKGTVPSRADYSSYAVSSLGTRGSNDN-IKAEASAFAGLEAG-------------------MLSCKYDWTK-------QKSPPQNLFKSQDFKMSLG-VGYDGVLQCTFQNGRFIFITALG----ASTGL--------GIGGKFATELNPAAAN-----DFFAALLAVMQNSGFQRFEFF--TFAAFNTILTVAAAFGLTVGQVMMLPFNIISNMEKQASDKDNAYFVANFLLSKEHQRENQQWIANMPAETLAKLLSVLIHYNDIPSFTLFGDTEAERNKAATRNENQRKAINQILLW----------LGGEKANQSGMRRFENALQRMGLADPTQLDKTEQWSRY. 1096
10 -4.220IDP04625 glycosyl transferase, group 4 family protein [Bacillus anthracis str. Sterne] BAS5050 [Bacillus anthracis str. Sterne]  ali follow..  12  2....................................................................................................................................................................DSQVIYAILASFITVLVVTPLVIKLA----------FKIGATDKPNARKVHQLGGLAIFIGVAV-----GFVVGGLYEQRMLSITLGAIIIVI----------IGILDDMYELSAKVKFGGQLLVAIMIVKSGLLVQVLYIPILGDTELGWLAYPITVFWIVGITNAINLIDGLDGLSISSIVLATLAYMAFTSPWGTGTAIILPLALIALASTLGFLFYNFHPAKIFMGDTGALFLGYCISVISLLGLKSVTLFSFIVPVIILGVPVFDTTFAIRIVNKKPISAPD................... 273
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.