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Query: [J] COG0009 Putative translation factor (SUA5), from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTKRWFVDVTDELSTNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIADISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDALSPRVTAGLETVAIRMPDHPLALALIRESGLPIAAPSANLSGKPSPTKAEHVAHDLDGRIAGIVDGGPTGIGVESTVLSCADDIPVLLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGSPERIQHLIQEYQQGGRRVGVLTTEEKAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDENKVDFIIAESFPDTGVGLAIMNRLMKAAGGRVIRLast
1 -110.000IDP01864 sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA5568 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  61  1MHTNMWVVDNVVERKKYYPQLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG-ISEKVTAGLHTVGVRMPDHPVALALIEEANVPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGVGVESTVIDCTSAVPTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFIQRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVDVIFSESFPNEGIGNAIMNRLTKAAGHHIIT 345
2 -5.970IDP01786 hydrolase, putative [Coxiella burnetii RSA 493] CBU_0502 [Coxiella burnetii RSA 493]  ali follow..  16  44.................EPTVQELVEVANHPKVVAI--ETGLDYYYNHSELGKMRDRFRCHALKLKKPLIIHSRSADTIQIMQEENAQSVGGVMHCFFSGIVTF-------------AKNVAEVAKKVPLE----KMLIETDAPYLAPVPYRGKKNEPQYIPYVAERIAE................................................................................................................................................................................ 203
3 -5.460IDP00957 gene: ycfH; predicted metallodependent hydrolase STM1202 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18  73................EAYDVEELRLLAAEDDVVAM--ETGLDYFYTPETKIRQQASFIHHGRELHKPVIVHTRDADTLAILREEKVTDCGGVLHCFFSGIVTF-------------AEQLRDAARYVPLD----RLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAV-----------GVAVEELAQITTDNFARLFHIDASRLSSIR....................................................................................................................................... 265
4 -5.300IDP02658 gene: yfiF; putative methyltransferase [Salmonella typhimurium LT2] STM2648 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  120FQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYVDEAELAKASGTEHHGGVCFLIKKRNKQAADQDCVLALEDVANPHNLGGMMRSCA---------GVKGVVVQDAALLESGAAEGGAEHVQPTGESIVDVLDDFRQAGYTVVTTSSDRGQALFST-------TLPEKMVLVL--GREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA....................................................................................................................... 345
5 -5.150IDP00130 gene: yjjV; putative deoxyribonuclease YjjV NT01ST5659 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  63.....LGLHPIVIERHADDDSDKLQQALAQQQNVVAVGEIGLDLYRDDPQFARQERFLDAQAKRYDLPVILHSRRTDKLAMHLKRQDLPRTGVVHGFVGGTITY-------------ASKTRDVMARLPLD----ALLLETDAPDMPLKGFQGQPNRPEQAARVFDALCE................................................................................................................................................................................ 234
6 -4.970IDP90666 mesJ protein [Vibrio cholerae O1 biovar eltor str. N16961] VC2242 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  9  1....................MDDLYLHFVQQLARYPFRKILLALSGGVDSQVLLALLARGRDEFGWDVTAVHVHH--GLSPNADQWAQYCQRCCRE-----VGMACQIEYVQLDVASGESIEKLA-REARYRVLAPHVNAQTLLLLG---------------QHADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLLRP-TVSRQHIEAYAKQHKLTWVIDESNADIRYERNFLRHQVTPVLTERWPSIRQAVQRSAELCAEQEALLQEFLAEALKKAITAEGGLSIAVLAEGSEGMRRIRAWFAHHRLPMPSRQHTERIWCEVALASEDANPKLKLNHIEVR 306
7 -4.940IDP05225 hypothetical protein lmo0415 [Listeria monocytogenes EGD-e] lmo0415 [Listeria monocytogenes EGD-e]  ali follow..  17  268.......IALTFDDGPSSSVTPGVLDTLKRHNVKA----TFFVLGSSVIQNPGLVKRELEEGHQVGS----HSWDHPQLTKQSTQ---------------EVYNQILKTQKAVFDQT--GYFPTTMRPPYGAVNKQVAEEIGLPIIVDTEDWKYRNAGIVTKKVLAGADGAIVLMHD-------IHKTTAASLDTTLTKLKSQGYEFVTIDELYG-------------EKLQIGKQYFDKTDSRMV.................................................................................................... 465
8 -4.810IDP02261 gene: fba-1; fructose-bisphosphate aldolase [Bacillus anthracis str. `Ames Ancestor`] GBAA2516 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  1........................MPLVQMKDILMKANQENYGVGASVTNMEMVMGAIKAAEE-LSSPLILQIAEVRLNHSPIHMIGPLMVAAAKQA---PVAVHFDMTFEKIQETLEIGFSSVMFDGSHYPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAHIPLVLHGGGISPEDFKQCI.................................................................................................................................... 220
9 -4.800IDP92119 tRNA delta(2)-isopentenylpyrophosphate transferase, putative [Toxoplasma gondii ME49] TGME49_112520 [Toxoplasma gondii ME49]  ali follow..  12  1MEERILRSS--------SERIHSCGS---KGERRTVPHSTSMSAGCSGIFSEKLPKKFSER------PLRLSVTSVQEDKRHFEESASFAASPSTSLSTFPSFLLSLSACASLPPSISSSSTQASSTSPSSSSTLSSFSSSSLPASSPASPSRSSASASPSSSVLASAVPSRGVVFILGPTGVGKTRLSVEVALALQRRGQAAEIVSADSMQVYKGCDIATAKASVEEQKQVPHHLLDICDVDSHFSVLRFLQLATQTIEALHARGVLPIVVGGTQLYLQHLLWRSLLDRYLHEDLESEMQDLYAELKKLDPERTTILWLDCRDEAVHRRRLEKRVEQMLQAGLLQ 393
10 -4.800IDP00939 gene: glnQ; glutamine ABC transporter ATP-binding protein STM0828 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  1....MIEFKNVSKHFGPTQVLHNIDLNIRQGEVVVI-------IGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFFPGPLR-VRGVKKEEAEKQAKALLAKVGLAERAHHYPSELVAIARALAVKPKMMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVEIGFAEKVASRLIFIDKGRIAED.......................................................................................................................................... 217
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.