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Query: [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTTIKQAKDHLNQDVTIGAWLTNKRSSGKIAFLQLRDGTGFMQGVVVKSEVDEEVFKLAKEIAQESSLYVTGTITEDNRSDLGYEMQVKSIEVISEAHDYPITPKNHGTEFLMDHRHLWLRSKKQHAVMKIRNEVIRATYEFFNKDGFTKVDPPILTASAPEGTSELFHTKYFDQDAFLSQSGQLYLEAAAMAHGKVFSFGPTFRAEKSKTRRHLIEFWMIEGEMAFTNHAESLEIQEQYVTHVVKSVLENCKLELKILERDTSKLEKVATPFPRISYDDAIEFLKAEGFDDIEWGEDFGAPHETAIANHYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNRLYPLast
1 -147.000IDP05209 gene: asnC; asparaginyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1494 [Staphylococcus aureus subsp. aureus COL]  ali follow..  99  1MKTTIKQAKDHLNQDVTIGAWLTNKRSSGKIAFLQLRDGTGFMQGVVVKSEVDEEVFKLAKEITQESSLYVTGTITEDNRSDLGYEMQVKSIEVISEAHDYPITPKNHGTEFLMDHRHLWLRSKKQHAVMKIRNEVIRATYEFFNKDGFTKVDPPILTASAPEGTSELFHTKYFDQDAFLSQSGQLYLEAAAMAHGKVFSFGPTFRAEKSKTRRHLIEFWMIEGEMAFTNHAESLEIQEQYVTHVVKSVLENCKLELKILERDTSKLEKVATPFPRISYDDAIEFLKAEGFDDIEWGEDFGAPHETAIANHYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNRLYP 430
2 -146.000IDP05239 gene: ansB; asparaginyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1896 [Listeria monocytogenes EGD-e]  ali follow..  75  1MKITINQASEFVGKEVTIGAWLANKRSSGKIAFLQLRDGTGFMQGVVVKAEVGDDIFATAKALTQETSLYVTGTINEDTRSPFGYEMAVSSVEVISESHDYPITPKEHGTEFLMDHRHLWLRSNRQHAIMKIRNEIIRASYEFFNKEGFLKIDPPILTGSAPEGTTELFHTKYFEEDAFLSQSGQLYMEAAAMAFGKVFSFGPTFRAEKSKTRRHLIEFWMIEPEMAFYKLEDSLQVQENYVAFLVKAVLDNCRLELDRLGRDVSHLEKMVAPFPRITYTEAIERLHELGFDDIVWGDDFGAPHETAIADSFEKPVFITHYPKAIKPFYMPEDPENDQVVLCADMIAPEGYGEIIGGSERIHDLETLQARMEDFDLDQEAYSWYLDLARYGSVPHSGFGLGLERTVAWISGTEHVRETIPFPRLLNRLYP 430
3 -130.000IDP05333 aspartyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS2031 [Bacillus anthracis str. Sterne]  ali follow..  29  7.RSLTKECTEKSGKVVSLQGWVKKIRHLGNVSFLLLRDRTGVIQCVLENEFAGFK-------VDVESIVHVIGEIVETSKTELGVEVLAHEVKILNGAEPLPFEKLQVGLDQLLNERVLSLRHERTTAIFKVKSTLVQSFSELLIENDFTRIFTPKIVSQGAEGGANVFKLPYFQKEAYLAQSPQFYKQMMVGGLERVFEIAPVYRAEHHNSSRHLNEYISLDVELGFIDFHEVMQLETDVLRYMFQQVAKNCEKELQLLQIEVP----VITEIPKITLLEAQEILKSKYCKESP-TEGEKLLGKYVKETYKSEFVFITHYPKEARPMYTMPNNENSAITDSFDLLYK--GLEITSGAQRIHNYEMLLDSFKEKGLHPDKFQSYLNTFRYGCPPHGGFGIGLERIVYKLLELSNVREASAFPRDCTRLIP 432
4 -120.000IDP05569 asparaginyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS4454 [Bacillus anthracis str. Sterne]  ali follow..  35  6VKSLYRDTDKYAGQTVQVSGWIRNLRDSKAFGFIELNDGSFFKSVQIVFDT-ELDNFKEIAKLPLSSSVKVEGKVIATPGAKQPFEIKAEKIDIEGLSDSDPLQKKRHTFEYLRTIAHLRPRTNAFSATFRVRSIAAFAIHQFFQERGFVHVHTPIITGSDTEGAGEMFRVDFFGKETNLTVSGQLNAEAYALAFRDVYTFGPTFRAENSNTTRHAAEFWMVEPEIAFAELGDVMNLTEDMLKYAMKYVLEHAPEEMEFFNSFVDKNNVINSDFGRITYTEAIKVLQESGADPVEWGIDLQTEHERYLEEIFKRPVFVTDYPKDIKAFYMRLN-DDGKTVAATDLLVP-GIGELIGGSQREERMDVLVDRIKELGMNEEDYWWYLELRKYGGTKHAGFGLGFERFLMYITGMANIRDVIPFPRTPGSSE. 462
5 -118.000IDP90728 gene: asnC; asparaginyl-tRNA synthetase [Yersinia pestis CO92] YPO1412 [Yersinia pestis CO92]  ali follow..  37  7..VDVLQGRAAVGSEVTVRGWVRTRRDSAGISFVAVYDGSCFDPLQAVVNNTLPNYQDEVLHLTTGCSVEVTGTVVASPGEGQSFEIQATAINVVGWVDDPDTAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQAIHRFFDENGYFWVSTPLITASDTEGAGEMFRVDFFGKEAFLTVSGQLNGETYACALSKVYTFGPTFRAENSNTSRHLAEFWMVEPEVAFASLDDVAGLAEKMLKYVFQAVLNERADDMKFFAERVDKQRFVTSDFAQVDYTDAIEILLASGQKDVSWGIDLSSEHERYLEKHFKAPVVVKNYPKDIKAFYMRMN-EDGKTVAAMDVLAP-GIGEIIGGSQREERLDVLDARLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLISYVTGVQNVRDVIPFPRTPRNAS. 465
6 -117.000IDP90531 RecName: Full=Asparaginyl-tRNA synthetase; AltName: Full=Asparagine--tRNA ligase; Short=AsnRS Q9KSF9 [Vibrio cholerae]  ali follow..  37  3.YAPVNDVKLAVDSEVTVRGWIRTRRDSAGISFLAIYDGSCFNPIQAVVPNNLNNYDNEVLKLTTGCSVEVTGKIVESPASGQAFELAASDVKVVGWVEDADTAKTRHSIEYLREVAHLRPRTNVIGAVARVRNCLAQAIHRFYHEQGYFWVSAPLITASDAEGAGEMFRVDFFGKETFLTVSGQLNAEAYACAISKVYTFGPTFRAENSNTSRHLAEFWMVEPEVAFADLNTVAKLAEDMLKYVFKAVLAERRDDLEFFNDRINNEQFVESDFAQVDYTDAIEILKNCGKTPVEWGIDLASEHERFLEEHFKAPVIVKNYPKDIKAFYMRMN-EDGKTVAAMDVLAP-GIGEIIGGSQREERLDILDARMREFGIDPEHMDWYRDLRRYGTVPHAGFGLGFERLVSYVTGMGNVRDVIPFPRTPRSAS. 465
7 -86.900IDP90630 gene: aspS; aspartyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0640c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  23  11........ISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGIIQLVCDPND-SKEAHEIASNARNEFVLITEGTIRPRGEGLGEIEVVVSKLTIENESAVPPFAIADVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFLEVETPILTKATPEGARDYLVPSRVHQGEFLPQSPQLFKQLLCSGFDRYFQIAKCFRDEDLRADRQ-PEFTQIDVEMSFCEQKDVIKVAETFLKDIFKACGKE-----------------IQTPFRQMQYKDAMELANELKLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPFTM-PKNIDETDLEEISSIAYDVVL--NGVELGGGSIRIHKNDIQQKVFKLLNIDEEQFGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANSIREVIAFPKTQR.... 554
8 -83.300IDP06134 gene: lysS; lysyl-tRNA synthetase [Helicobacter pylori J99] NP_222891 [Helicobacter pylori J99]  ali follow..  19  48.....LEEPKDKEKCESVVGRVKLLRLMGKACFIKIEDESAILQAYVSQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGE--LSIHALEFHILSKTIVPLPEKFHSDIELRYRQRYLDLVNPGVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHLEIERYLRIAPELYLKRLVGGFEAVFEINRNFRNEGMDH-SHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLDSKIIYN-------DMEVDFNQTSVISYLDALEEQGIKVEPNLTHGKLLAEAFDHFVEHKLINPTFVTEYPIEISPL-ARRNDSNPNIADRFELFI--AGKEIANGFSELNDPLDQLERFKNQVAEKEK-EDYVWALAHEMPPTAGQGIGIDRLVMLLTGAKSIKDVILFPAMRPV... 491
9 -82.900IDP02443 gene: lysS; lysyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo0228 [Listeria monocytogenes EGD-e]  ali follow..  20  53.....KEELEEAAIEVSVAGRIMTKRVKGKVGFTHIQDRFHQLQIYIRKDAIGEDAYAVFKLADLGDIIGIKGTIFRTNTGE--LSVKATEFTLLSKSLRPLPDKYHKDVEQRYRQRYLDLTNEESQNRFVMRSKILKYTRDYMDNQGFLEVETPVLHTIAGGAAAKPFITHHLDMELYLRIALELHLKRLVGGMDKVYEIGRVFRNEGTST-RHNPEFTMLESYAAYEDYEDVMDLVEGLVSTVCKQVNGTTEITYGEYKVDLT------PNWRRIHMADAVKKHDVPVTEHMTYGHILNEFFETYVEEKLIQPTFVYGHPVEISPL-AKKNKEDERFTDRFELFI--VGREHANAFSELNDPIDQRERFEAQMKEREQ-ADFLEALEYGLPPTGGLGIGIDRLVMLLTDAPSIRDILLFPTMKHR... 497
10 -82.400IDP90685 gene: lysS; lysyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0401 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  19  48.....QVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYTILKKLEVGDIVLVKGFPFVTKTGE--FSLHASEVKLATKAIVPLPEKYHTDIEQRYRKRYVDMMNVEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHLGVERFLRIAPELYLKRLVGGFEAVFEINRCFRNEGMDL-THNPEFTTIEFYWAYHNYKDLMDLTEELFALLLDKLNLGKTIEFDGKMINFS------KPFERITYKDALKADGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPL-SRRSDEDSQIAERFELFI--CGRELANGFNELNDPLDQYERFLKQIEAKNA-EDFVNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPL... 493
11 -82.300IDP90947 gene: lysS; lysyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252] SAR0518 [Staphylococcus aureus subsp. aureus MRSA252]  ali follow..  22  51.....ELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDDEFDLWKNADLGDIVGVEGVMFKTNTGE--LSVKAKKFTLLTKSLRPLPDKFHQDIEQRYRQRYLDLTNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTHHLDATLYMRIAIELHLKRLVGGLEKVYEIGRVFRNEGVST-RHNPEFTMIELYEAYADYHDIMDLTESMVRHIANEVLGSAKVQYNGETIDLE------SAWTRLHIVDAVKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPL-AKKNPEDPRFTDRFELFI--VGREHANAFTELNDPIDQKGRFEAQLAEKAQ-EDYIEALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK... 495
12 -82.100IDP04576 lysyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS0076 [Bacillus anthracis str. Sterne]  ali follow..  22  53.....KEELEEKEISVSIAGRIMTKRGKGKAGFAHIQDLHGQVQIYVRKDAVGDEEYELFKTADLGDLVGIEGKVFKTNVGE--LSVKATGFTLLTKSLRPLPDKYHKDVEQRYRQRYLDLTSMESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFITHHLDMELYMRIAIELHLKRLVGGLEKVYEIGRVFRNEGVST-RHNPEFTMIELYEAYADYKDIMKLTENMVAHIAKQVLGTTTIQYGDYEINLE------PEWTRLHMVDAIK-HNVEIKDTMEVGHIINEFFEQKVEDKLIQPTFIYGHPVEISPL-AKKNDEDPRFTDRFELFI--VAREHANAFTELNDPIDQKERFEAQLKEREQ-DDYIEALEYGMPPTGGLGIGIDRLVMLLTNAPSIRDVLLFPAMRHK... 497
13 -81.600IDP06319 gene: lysS; lysyl-tRNA synthetase [Streptococcus pneumoniae TIGR4] NP_345214 [Streptococcus pneumoniae TIGR4]  ali follow..  22  48.....KEQLHDKNETATIAGRLITKRGKGKVGFAHLQDREGQIQIYVRKDAVGEENYEIFKKADLGDFLGVEGEVMRTDMGE--LSIKATHITHLSKALRPLPEKFHTDVETIYRKRYLDLSNRESFERFVTRSKIISEIRRYLDQKGFLEVETPVLHNEAGGAAARPFITHHQNIDMVLRIATELHLKRLVGGMERVYEIGRIFRNEGMDA-THNPEFTSIEVYQAYADFQDIMDLTEGIIQHAAKSVKGDGPVNYQGTEIKIN------EPFKRVHMVDAIREI-PVEKHYTEVGHIINAFFEEFVEETLIQPTFVYGHPVAVSPL-AKKNPEDQRFTDRFELFI--MTKEYGNAFTELNDPIDQLSRFEAQAKAKEL-YDYIEALEYGMPPTGGLGIGIDRLCMLLTDTTTIRDVLLFPTMK..... 491
14 -81.300IDP05303 gene: aspS; aspartyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1685 [Staphylococcus aureus subsp. aureus COL]  ali follow..  25  13........EAFLGQEITLKGWVNNRRDLGGLIFVDLRDREGIVQVVFNPAF-SEEALKIAETVRSEYVVEVQGTVTKRDPETGQVEVQVTNIKVINKSETPPFSINEVDENIRLKYRYLDLRRQELAQTFKMRHQITRSIRQYLDDEGFFDIETPVLTKSTPEGARDYLVPSRVHDGEFLPQSPQLFKQLLISGFDKYYQIVKCFRDEDLRADRQ-PEFTQVDIEMSFVDQEDVMQMGEEMLKKVVKEVKGV----------------EINGAFPRMTYKEAMRRLIDETKLNFLWVTDWPLLEYDEDAKRYVAAHHPFTSPKEADIA-KLGTAPEEAEANAYDIVL--NGYELGGGSIRIHDGELQEKMFEVLGFTKEQFGFLLDAFKYGAPPHGGIALGLDRLVMLLTNRTNLRDTIAFPKTASATCL 566
15 -80.900IDP90637 gene: lysS; lysyl-tRNA synthetase [Yersinia pestis CO92] YPO0888 [Yersinia pestis CO92]  ali follow..  22  58.....NEELEALNIDVTVAGRMMTRRIMGKASFVTLQDVGGRIQLYVSRDDLPEGVYNEEKKWDLGDILGARGKLFKTKTGE--LSIHCSELRLLTKALRPLPDKFHADQETRYRQRYLDLANDESRHTFKVRSQVMSGIRSFMVEKGFMEVETPMMQVIPGGASARPFVTHHLDIDMYLRIAPELYLKRLVGGFERVFEINRNFRNEGVSP-RHNPEFTMMELYMAYADYKDLIVLTEELFRTLTETILGSSVVQYGEQTFDFG------KPFAKLTMKEAIC-LGIKVEKSWGLGRIQCEIFEETAESHLIQPTFITEYPAEVSPL-ARRNDDNPFITDRFEFFI--GGREIGNGFSELNDAEDQAQRFADQVSAKEA-EDYITALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPV... 504
16 -80.000IDP05234 gene: aspS; aspartyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1519 [Listeria monocytogenes EGD-e]  ali follow..  23  13........EAHIGQSVVLHGWVQKRRDLGGLIFIDLRDREGIVQVVFNPEF-SKEALEIADSVRNEFVVTIKGTVHARGEKAGKVEVLAEEITILNTSKTPPFYIEDGSDELRLKYRYLDLRRPEMNNIFKMRHTVTRTFRNKLDALGFFDIETPYLTKSTPEGARDYLVPSRVGNFYALPQSPQILKQLLTAGFDKYYQIVRCFRDEDLRGDRQ-PEFTQIDLETSFLTKEEIQAITEDMLVDVVKEAKN----------------ITIEKPFPRMTYKEAMDRLINEEELAFLWVTDWPLFEYDEEAERYVSAHHPFTLPKEEDIPLLETDSS-KVMAEAYDIVL--NGYEIGGGSLRIYKKEVQESMFRALGFTDESFGFLMDALEYGTPPHGGIALGLDRIVMILAGRNNLRDTIAFPKTGSAVDP 565
17 -79.000IDP04615 aspartyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS4297 [Bacillus anthracis str. Sterne]  ali follow..  25  13........VEAVGQTVQLKGWVQKRRDLGGLIFIDLRDRTGIVQVVFNPET-SKEALEVAETIRSEYVLHVEGTVVERGEGAGRIEVQATKVSVLNAAKTTPIIIADDSEDVRLKYRYLDLRRPVMFNTFKMRHDVTKTIRNFLDTEEFLEVETPILTKSTPEGARDYLVPSRVHDGEFLPQSPQLFKQLLVGGFERYYQVARCFRDEDLRADRQ-PEFTQIDIEASFLTQDEILDMMERMMTKVMKDAKG----------------VEVSAPFPRMKYADAMARLIDESKFNFLWVTDWPLLEYDEDADRYFAAHHPFTMPFREDVE-LLETAPEKARAQAYDLVL--NGYELGGGSLRIYERDVQEKMFKALGFSQEEFGFLLEAFEYGTPPHGGIALGLDRLVMLLAGRTNLRDTIAFPKTASASCL 565
18 -78.900IDP90889 gene: lysS; lysyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str. N16961] VC0664 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  20  65.....KEELEALNHVVSIAGRVMAKRGP----FLVIQETSGRIQAYASKEVQ-QELKDKYQGLDIGDIIGVQGALHKSGKGD--LYVNMEQFQLLTKALRPLPEKFHTDQEMRYRQRYVDLVNENSRNAFIVRSKVMSAIRNFMISKQFMEVETPMMHVIPGGASARPFITHHLDMPMYLRIAPELYLKRLVGGFDRVFEINRNFRNEGLSP-RHNPEFTMMEFYMAYADYKDLMDLTEELLSSVALEVLGSTSMPYGEHTVEFG------GKYARMSMFDAIK-VHVDVEPFWTCGQLLEEIFGETAEPKLMQPTFITGYPADISPL-ARRSDDNPFFTDRFEFFI--GGREVANGFSELNDAEDQDARFKAQVEAKES-ADYITALEHGLPPTAGQGIGIDRLVMLLTNTHTIRDVILFPAMRPQ... 511
19 -78.700IDP90878 gene: aspS; aspartyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str. N16961] VC1166 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  21  11........KSLVGQTVELCGWVNRRRDLGGLIFIDMRDREGIVQVVVDPDM--ADVFAVANQLRSEFCIKLTGEVRARPESQGEVELLARSLEIINRSDVLPLDNQKNSEEQRLKYRYLDLRRPEMSDRIKLRAKASSFVRRFLDTHGFLDIETPVLTKATPEGARDYLVPSRVHKGSFLPQSPQLFKQLLMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDIETSFMTAEQVRAVTEKMIREMWLELLNVDLGDFPIMPYSEAEIIQAIIERTQAQTGDIILFGADSAKVVAEALGALRLKFESDDEGNVAAMHHPFTSPLNLSPE-QLKANPEEALSNAYDMVL--NGYEVGGGSVRIHNAEMQSAVFDILGITPEEFGFLLDALKFGTPPHAGLAFGLDRLVMLLCGTENIRDVIAFPKTTAAACL 563
20 -77.800IDP90838 gene: aspS; aspartyl-tRNA synthetase [Yersinia pestis CO92] YPO2053 [Yersinia pestis CO92]  ali follow..  20  11........LSHVGQSVTLCGWVNRRRDLGGLIFIDMRDREGIVQVFFDPD--HKAAFEQASELRNEFCIQITGTVRARPDSQGEVEIFANTLNIINRSEPLPLDNQINSEEQRLKYRYLDLRRPEMADRLKSRAKITSFVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFLPQSPQLFKQLLMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSFMSADQVREVMEKLVRELWQETKGVDLGDFPVMTFAEAEVLDAILVATQAESGDILFFGADSYKIVTDAMGALRLKFEDDSEGGLTAMHHPFTAPKDMSP--QLAAAPTTAIANAYDMVI--NGYEVGGGSVRIHRTEMQQTVFGILGITEDEFGFLLDALKFGTPPHAGLAFGLDRLVMLLTGTDNIRDVIAFPKTTA.... 559
21 -68.500IDP05307 lysyl-tRNA synthetase [Yersinia pestis CO92] YPO0362 [Yersinia pestis CO92]  ali follow..  13  8.........................................................................................................................QPSAPIANLLKRAAIMAEIRRFFADRGVLEVETPTMSQAVTDIHLVPFETRFVGLTLYMMTSPEYHMKRLLAGSGPIYQLGRSFRNEEAGR-YHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQILDCNSAETLSYQQAFLRHLNIDPLSAEKAQLREVAAKLD-LSNIADTEEDRDTLLQLLFTVGVEPYIGKPAFIYHFPASQASL-AEISTEDHRVAERFEVYF--KGIELANGFRELTDGDEQLQRFEQDNRNRAK-MNLIAALKQGLPDCSGVALGVDRLVMLALNAERLSDVIAFPVNI..... 324
22 -66.700IDP01693 gene: yjeA; lysyl-tRNA synthetase [Salmonella typhimurium LT2] STM4344 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  8.........................................................................................................................QPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQAVTDIHLFPFETRFQGINLYLMTSPEYHMKRLLAGCGPVFQLCRSFRNEEMGR-HHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCQPAESLSYQQAFQRHLEIDPLSADKTQLREAAAKLD-LSNIADTEEDRDTLLQLLFTMGVEPHIGKPTFIYHFPASQASL-AQISTEDHRVAERFEVYY--KGIELANGFHELTDAREQQQRFEQDNRKRAA-QNLLDALAAGLPDCSGVALGVDRLVMLALGAESLADVIAFTVDRA.... 325
23 -13.900IDP04618 phenylalanyl-tRNA synthetase subunit alpha [Bacillus anthracis str. Sterne] BAS4456 [Bacillus anthracis str. Sterne]  ali follow..  12  1MEARLKELKQKALELIE----AKELKGLNDVRVAYLGKKGPITEVLRGMGKLSAEERPRM------------GALVNEVREAIQTRLDDKISNLEKAVIEAKLATETIDVTLPGRPVETGCHHP---------TAVVEQIEDVFIGMGYEVAEGTEVEKDKDHPARDMQDTFYITEETLLRTHTSSVQARTMENNKKIICPGKVYRRDDDDAT-HSHQFMQIEGLVI-IRMSDLKGTLQVFVKKMFG----------------------------------------------------------EDREIRLRPSFFPFTEPSVEMDISCMMCHG-----KGCGTCKGTGWIEILGAGM------VHPNVLEMAGYDSKEYQGF------------AFGMGAERIAMLKYGVDDIRHF............ 330
24 -13.600IDP05680 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Listeria monocytogenes EGD-e] lmo1221 [Listeria monocytogenes EGD-e]  ali follow..  12  1...................................MLEQLQTLKSEAETQINEASDLKTLNDLRVKEIMKQMGKLSAEERPKMGSLANEVRTALTEAISSKQQILETEAINEKLKSETIDVTLPGTAPSIGTKTQVIEEMEDMFIGMGYEIAEGPEVELDKDHPARDMQDSFYITENTLLRTQTSPVQARTMEKHDKVICPGKVYRRDNDDAT-HSHQFTQIEGLVV-ITFADLKGTLTVLAKTM-----------------------------------------------------------------------FGEEREIRLRPSFFPFTEPSVEMGKGCRVCKGTGWIEILGSGM------VHPNVLEMSGIDSTRYSGF------------AFGLGPERVAMLKYAVDDIRHL............ 331
25 -12.600IDP90648 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Vibrio cholerae O1 biovar eltor str. N16961] VC1219 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  17  8...................................IANATSAINAAESLVALDEVRVQYLGK-ELTVQLQSLGKLPPEERRTAGQEINVAKEAVQKALAERKDALQSAELEAKLAAETIDVTLPGRRGGLHPVTRTIERIESFFGELGFTVESGPEIEDDADHPARTDHDTFFFNPKLMLRTHTSGVQIRTLEERQRFIAPGRVYRNDYDQT--HTPMFHQVEGMLV-VNFAQLKGILHDFLCNFFEEDLE-----------------------------------------------------------------------VRFRPSYF------PFTEPSAEVDVKGKNGEVLGCGM---------NVLRSVGIDPEKYSGF------------AFGMGVERLTMLRYGVNDLRAF............ 315
26 -12.400IDP90931 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Salmonella typhimurium LT2] STM1337 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  1....MSHLAELVANAAAAINQASDVAALDNVRVEYLGKKGHLTLQMTTLRDLPPEERPAA------------GAVINAAKEQVQQALNARKAELESAALNARLAAETIDISLPGRRIENGGLHP---------TRTIDRIESFFGELGFTVATGPEIEDDGHHPARADHDTFWFDATRLLRTQTSGVQIRTMKAQQRIIAPGRVYRNDYDQT--HTPMFHQMEGLIV-ISFTNLKGTLHDFLRNF-----------------------------------------------------------------------FEEDLQIRFRPSYF------PFTEPSAEVDVNGKWLEVLGCGM---------NVLRNVGIDPEIYSGF------------AFGMGMERLTMLRYGVTDLRSF............ 315
27 -11.400IDP90766 gene: hisS; histidyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0765c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  16.................................................................................................................................AYYYEKVIKICEEVAKNYGFTFINTPHLELCTLFKRSVGESSDIVGKEMYVCMRPEGTAGVVRAYIERWFYYGSMFRYERPQKGRL-REFHQFGVESLGIP--SIILMLVEIFSRLGIDFSQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAPLLINNLCTSCQKDFETLQQILKDNGVKFEL----DSKLVRGLDYYSKGAKAAIAGGGR---------------------YDRLIEYLGGKSGYGIGFAMGIERIITIL..................... 311
28 -11.300IDP05687 gene: hisS; histidyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1520 [Listeria monocytogenes EGD-e]  ali follow..  11  17.................................................................................................................................VSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKEMYLTLRPEGTASVVRAFVEKMYYNEPMFRYERPQGGRQ-RQFTQMGIEALGSD--EVISLAMEFFRKILGDKESRLKHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFENVKNYLNALEIPFEI----DPTMVRGLD-YYNHTTFEIMSVEEGFGAKTTL--------CGGGRYHGLVREFGGPDTPGMGFGIGVERILLAL..................... 317
29 -11.300IDP90840 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Shigella flexneri 2a str. 2457T] S1634 [Shigella flexneri 2a str. 2457T]  ali follow..  13  8...................................VASAKAAISQASDVAALDNVRVEYLKKGHLTLQMTTLRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDGHHPARADHDTFWFDATRLLRTQTSGVQIRTMKAQQRIIAPGRVYRNDYDQT--HTPMFHQMEGLIV-ISFTNLKGTLHDFLRNF-----------------------------------------------------------------------FEEDLQIRFRPSYF------PFTEPSAEVDVNGKWLEVLGCGM---------NVLRNVSIDPEVYSGF------------AFGMGMERLTMLRYGVTDLRSF............ 315
30 -11.200IDP90652 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0897c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  1...................................MQNFIEQIQKCENLNDLEAIRISVLGK-ILTEGFTKLKELEDEAKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESGALHPVMSTMDKIIEYFIALNFSIEKGPLIEDDKSHPARDMQDTFYFDDKRLLRTQTSPVQIRTMLAQKRMIAPGAVFRRDFDIT--HTPMFHQVEGLVVEEGQKVSFANLKSVLEDFLRYMFGDVKVRFR--------------------------------------------------------PSF---FP--TEPSAEVDISCVFCKGKGCRVCKHTGWLEVLGCGI------VDPNVYNFVGYENVS----------------AFGLGVERFAMLLHQIPDLRSL............ 318
31 -11.100IDP90816 gene: hisS; histidyl-tRNA synthetase [Yersinia pestis CO92] YPO2878 [Yersinia pestis CO92]  ali follow..  14  19.................................................................................................................................TAIWQRIESILKQVLSGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYLTLRPEGTAGCVRAGIERLWYIGPMFRYERPQKGRY-RQFHQLGAEVFGLP--ELILLTARWWRAL--GIFEHVKLELNSIGSLAARADYREALVAFLE-SNPLRVLDSKNPDVQQLLDDAPKLSDYLDEESKQHFAGLCELLDKASIPYTV----NERLVRGLDYYNRTAQGTVCAGGR---------------------YDGLVEQLGGRATPAVGFAMGLERLVLLV..................... 316
32 -11.000IDP90756 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Yersinia pestis CO92] YPO2429 [Yersinia pestis CO92]  ali follow..  14  1....MPHLAELVAKAKAAVEGAQDIAALDLVRVEYLGKKGHLTLQMTSLRELPAEERPAA------------GAVINQAKQEVQEALNARKEKLESAVLNARLAAETIDVSLPGRRMENGGLHP---------TRTIERIETFFGELGFSVESGPEIEDDAHHPARADHDTFWFDATRLLRTQTSGVQIRTMQEQQRIIVPGRVYRNDYDQT--HTPMFHQMEGLIV-ISFTNLKGTLHDFLRNF-----------------------------------------------------------------------FEEDLQIRFRPSYF------PFTEPSAEVDVMGKNGEVLGCGM---------NVLRNVGIDPEIYSGF------------AFGMGMERLTMLRYGVTDLRAF............ 315
33 -10.700IDP90628 gene: hisS; histidyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str. N16961] VC0760 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  19.................................................................................................................................SPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEKEMYLTLRPEGTAGCVRSGIERLWYMGPMFRHERPQKGRY-RQFHQCGVEVFGLD--ELIMMTARLWREL--GIAQHVRLELNSIGSLEARANYRTALIDYLE-TNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQHFAGLCELLDAAGIEYTV----NQRLVRGLDYYNRGSQGTVCGGGR---------------------YDGLVEQLGGKPTPAVGFAMGLERLVLMMETLGNTDV............. 324
34 -9.530IDP06044 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Helicobacter pylori J99] NP_223695 [Helicobacter pylori J99]  ali follow..  11  1...................................MHTLIERLEKVTNSKELEEARLNALGK-VFADKFNQLKNLNGEEKNAFAKEIHHYKQAFEKAFELKKKAIMELELEERLKKEKIDVSLFNAIKTSSSHNYTKNKIIEFFTPLGYKLEIGSLVEDDPYHPARDMQDTFYFKDHKLLRTHTSPVQIHTMQEQTKMICLGETFRCDYDLT--HTPMFHQIE---LVVDQKGNIRFTHLKGVIEDFLHYFFGGVKLRWRSSFFP-------------FTE----------------------------------------PSAEVDISCVFCKQ-----EGCRVCSHTGWLEVLGCG--------MVNNAVFEAIGYENVSGF------------AFGMGIERLAMLTCQINDLRSF............ 317
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.