current user: public
If you have questions about the server, please let us know.

Query: [S] COG0398 Uncharacterized conserved protein, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .
# Score Template Links and tools%idFirst MMKMQSRKIWYYRITLIILLFAMLLAWALLPGVHEFINRSVAAFAAVDQQGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGSLSWTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHTILVCRLLPFVPFDPISYAAGLTSIRFRSFFIATGLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTVVIFMAKKIWLERQKRNALast
1 -7.370IDP92691 hypothetical protein SAUSA300_0346 [Staphylococcus aureus subsp. aureus USA300_FPR3757] YP_493060 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali follow..  11  321.................................................EGLEVLL--------IVMTLTTMTRNV-----GAIAGLVLSIILAITFVETLGNSGGIVAVILMFIVGVWMHKRSNAKRWNDMIKNMYANAISNGNLVLLATIGLISVLRVEVIIFYMGMIELATKDFIIGIALAIVILIIFALLFVKLIPIFYIFRVLSIFIFIMGFKMLG.............. 506
2 -6.800IDP06035 NMD3 protein [Toxoplasma gondii ME49] XP_002370958 [Toxoplasma gondii ME49]  ali follow..  8  37LWTEPHSRRVKMKLTVQSDVLDGRAGLQQSLIIEGVIQNTQSYTPHAGWTAMVQVRQHAEHKRTFLFLEQLVLKHRLAARLLNVVEKSDGLDF-------------FPSRQAALHFADFCQSRFPSVSRQAKQLISHDASSNIYYHKYTISVTLAPVCKDDLVAQLGGFTNLSLCTRVAGAGIQLTPFSGKVLNVSPEKYWKSPFQPLCTRKHLSSFLVLDVNPVDRPGYSQTES 274
3 -6.440IDP04529 gene: acrD; aminoglycoside/multidrug efflux system [Salmonella typhimurium LT2] STM2481_1_1037 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  339.................................................DVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTL-TMFAMVLAIGLLAIVVVENVERIMSEEGLTPREATRKGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPAL.................................... 492
4 -6.100IDP92689 hypothetical protein SAVC_09040 [Staphylococcus aureus subsp. aureus VC40] YP_005291395 [Staphylococcus aureus subsp. aureus VC40]  ali follow..  12  290.............................................................................................................................QNFSGNAYLNGLQQQSN--------YFRFQYFNPLKSERYYRNLDEQVLA--LITGEIGSMPDL---NKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNES 416
5 -5.890IDP06537 Surface protein from Gram-positive cocci, anchor region [Enterococcus faecium DO] EAN08832 [Enterococcus faecium DO]  ali follow..  14  1.......................................................MKKRASLLVLVALLFNIFSYGVAVSAETYIPKDPGNIYNDLTG-------GLLGIASQFHV---FAKNKTT--------------AHTDG---IATHELDAKNNFGTINYIQKTDSFA------SSGIPTGSTRMNKFVVGSNVDVALQDGHPTV......................... 138
6 -5.690IDP06374 gene: ORF17; ORF17 [Human herpesvirus 8] YP_001129369 [Human herpesvirus 8]  ali follow..  11  1.............................................MAQGLYVGGFVDSCPKLEQELYLDPDQVTDYLPPLPITIEHLPETEV-----GWTLGLFQVSHG---IFCTGAITSPAFASRLADTSHVARAPVKNLPKEPLLEILHTWLPGLSLS-PRELSQTPSGPVFQHVSLCALGRRRGTV--AVYGHDAE................................... 155
7 -5.640IDP04211 gene: secF; preprotein translocase subunit SecF [Salmonella typhimurium LT2] STM0408_1_323 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  152..........................................................VALISILVYVGFLAAGVVIALAHDVIITLGILSLFHTIVASLMSVIGYSLNDSIVVS--RKIRRGTPYEIFNVSLTQTLHRTLITSGTTLVVILML----------YLFGGPVLE--GFSLTMLIGVSIGTASSIYVASAL.................................... 295
8 -5.610IDP06369 gene: vIRF-4; vIRF-4 [Human herpesvirus 8] YP_001129412 [Human herpesvirus 8]  ali follow..  12  732...........................RVSFVVEIFVYGNLRGTLRREGDAGEAMLCSWPVGDTLGHLCQSFVPELLR-IPRLTVEILNRVFEGLGHGFPIFCSMSGITQVEGWWFGNPNSRYEILRSFSPRVPQQL----------------------FNTARYLATTAAIP-------TPLSVNPVTCGTVFFGASPASTENFQNVPLTVKIFIGSI................ 906
9 -5.310IDP04526 putative inner membrane protein [Salmonella typhimurium LT2] STM1637_1_516 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  1.MALPQLSIWQPGDGLRKIKYKYHVCLIVIFSVLIRLLFLTDRYLWCD-EASSVLISRHSVDNPLYYLLLHDWMI----------------LWGDSIAAVLSLLFGILTVVLVIALTRWLAN-------------------ERTALLAGWFAALMPM----AVHYSQ-----ETRMYALMGMLTLAAALALMMWIKTPTHNRYLVAYALLMTFSFYTHYFTLFT........... 191
10 -5.260IDP06528 gene: scm; collagen-binding MSCRAMM Scm (Fms10) [Enterococcus faecium DO] AFK60297 [Enterococcus faecium DO]  ali follow..  15  1.......................................................MKKRASLLVLVALLFNIFSYGVAVSAETYIPKDPGNIYNDLTG-------GLLGIASQFHVAHTDGNIATHELDAKNNFELHEGLLNQE------------------INYIQKTDSFA------SSGIPTGSTRMNKFVVGSNVDVALQDGHPTV......................... 138
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.