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Query: [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIVIKFRGRHRLIRRVSGQVYLWLAIFIFGASSAVTRKLTEIGARHFIDGRNPISLCNVLFVGNLCALMVMLLIYSRQWNKATLTQLSKKDWLGLTAVAILSGALAPGLIFHALSLTGVNNVILVGRLEPTLALALSVWLLKEQINFGEFIGAIAAFIGVILTIILQPPVSDMMNMGGWQLGLGEFFVAAGSVALAISTIIGKKYLTHIPLGIYSIFRTALGTVIFFFIALVLYGREHFADVFSPFLWQWMFLYGGVIVVVGQSFWLIGLKTSTVSTASLVASFTPIAGIVAAYFILSEVPTVAQYLGGGLIMLGIFLSQISKSRQTSHKSPIASTPAEQKVEMDMGFKGMLast
1 -44.400IDP06148 hypothetical protein jhp1155 [Helicobacter pylori J99] NP_223873 [Helicobacter pylori J99]  ali follow..  13  3............NTILFGVSMILLANLCFGIMSAFVKITA--------DYFSPMENVFYRSITMTLLLLLIYPF-----KPYRLKSYKQGGFKKLAFRVVVG-GLAMLAFFYNIEKISLATATAFSQCAPIYTVLLSPLLLKEKLKRSALISACIGLVGVVLISDPSVENVGL---------VEIIMGILSGIFVSLAYITLRDLREYYDKQAVILAFAFGMSLLGLAGMFIDIPFLSTGVHIRKEDILWISLIGISGT-LGQYFLTYAYMNAPAGIIAPIEYTRIVWGLLFGLYLGDTFLDLKSSLGVALILCSGLLIALPALLKELKK..................... 297
2 -12.300IDP05290 gene: sugE; quaternary ammonium compound-resistance protein [Clostridium difficile 630] CD0488 [Peptoclostridium difficile 630]  ali follow..  17  33............................................................................................................................................................................................................................................................ILTVVGMIVSFYFLSLALKHLPLGTSAIWTGIGTVGTAIVGMAILNEPISISRIACIGFIVVGIVGLKLLSTN.......................... 106
3 -8.530IDP91323 hypothetical protein VV2_0301 [Vibrio vulnificus CMCP6] VV2_0301 [Vibrio vulnificus CMCP6]  ali follow..  10  61..........................................................................................................................................................................................................................................................FAAKGVGFVNGILKAKDKRLSFDEQEETQLTGAIAPVLAEPPPWLYGPE-------LTLLATVSIIGFGKYAMMQEIQKEEALKRAAIIQAAKAQGG.... 156
4 -6.780IDP05521 putative cell surface protein [Clostridium difficile 630] CD1858 [Peptoclostridium difficile 630]  ali follow..  16  1.............................................................................................................................................................................................................................................................................MKKMKNKKAAILGAVLLIVGVVISLF-----------AGSKIVFAGLFTTLVNPIEAVAQIKVEVEVNVKYIFEDEKVFK.. 73
5 -6.460IDP91698 gene: NPM1; nucleophosmin isoform 1 [Homo sapiens] NP_002511 [Homo sapiens]  ali follow..  7  39...................................................................................................................................................................................................................................................EHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKM--TVSLGGFEITPPVVLRLKCGSGPVISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAP.... 145
6 -6.450IDP04349 putative inner membrane protein [Salmonella typhimurium LT2] STM0557_1_550 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  8  1.....MRRKMVNNRLKMVIAILIVFSLVWSGSDTISTSLLKFFSPHIYNAINSAALTLMVLCWTMIFLFFLYFVANPALGQTNFWLVGSANYLWTNMFIAIYILISIYLSNGKKSNLILFVYAISSNTSLVVVLISVAYFFIMNRNKYLLIGVFGSAIGAGVLLLAP----------------GNLSRASTIQDWYNQPLAWRVLEHFSERLPSAMGAYWQVYIAFIILLISV-----VLSRNSSSKLMFGSFLFMLGAIAANVAFLASPAMPSRALNGALCFMILSISFVAHSAFTKFNKASIYLSVTTYAMAFLYFIPSYILYYSSIKSISKQTEIREEIIDRAKHNKQ 383
7 -5.950IDP00824 IgG-binding protein SBI SACOL2418 [Staphylococcus aureus subsp. aureus COL]  ali follow..  10  1........................................................................................................................................................................................................................................................................................................MKNKYISKLLVGAATITLATMISNGEAKASENTQQTSTKHQTTQNNYVTDQQKAF 55
8 -5.920IDP04470 putative amino acid antiporter [Yersinia pestis CO92] YPO2306 [Yersinia pestis CO92]  ali follow..  12  226.......................................................................................NKKDVGRATMLAVISALSVYLL--ITLLSLGVVPRAELAGMRNPSMAGIMVEMIGPWGEIIIATGLIISVCGAYL---------------------SWTIMAAEVPMVAAKHGAFPKIFRHQNKNNAPAQSLWLTNSAVQVALVLIW--------LTGSNYNTLLTIASEMILVPYFLVGAFLFKVALKRQDWRLIVAASGACLYGLWLIYAAGLVYLLLSVLLYAPGLLVFIYARKGHEGLR..................... 437
9 -5.660IDP05012 cell wall surface anchor family protein [Bacillus anthracis str. Ames] BA_5070 [Bacillus anthracis str. Ames]  ali follow..  13  112..............................................................................................................................................................................................................................................................................EKLPNTASNNVAMM---------------------ALSACLVGIGTLFGLKRRNKVKA....................... 148
10 -5.500IDP00406 hypothetical protein YPO3410 YPO3410 [Yersinia pestis CO92]  ali follow..  11  1................................................................................................................................................................................................................................................................MKRTTLVMLLLTLCGFSSASFALSESEAEDLADLTAVFVYLKNDCGYQELPNNEIKRAIVYFAQQNRWDLHNYDSFNMKALGEDSYRD....... 88
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.