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Query: [J] COG1097 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain), from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKKIVIPGDLLSENQKKAGYGTYVKNDKIYSSLCGIENLKEDKVGVIPLAGAYIPSANDVVIGIVIVVTPSNWIFDIAAPYDGLLHVSEYPRRVESREMPEILNVGDSVILRVKDVDSSMKVELALRDPSLHKLKTGQIIKVESVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWIDGKDEDIELLSKALRKIELEAQRSGLTDRIYNFLKNERIRQKESKPVGFFKNETEGVTATKEDHSEEIYRKIDVLLDPKNLast
1 -14.600IDP00627 hypothetical protein SACOL0552 SACOL0552 [Staphylococcus aureus subsp. aureus COL]  ali follow..  22  4........................................................EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADN-YVENVEEHLSVGDEVDVKVLSIADDGKISLSIKK................................................................................................................................... 75
2 -14.000IDP01668 hypothetical protein GBAA0060 [Bacillus anthracis str. `Ames Ancestor`] GBAA0060 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  23  4........................................................EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADN-YVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKK................................................................................................................................... 75
3 -12.100IDP01255 gene: yugI; general stress protein 13 BA_5132 [Bacillus anthracis str. Ames]  ali follow..  26  6........................................................TTGVVVTGKVTGIQDYGAFVALDAETQGLVHISEITNGY-VKDIHDFLKVGDTVEVKVLSIDEEHR.......................................................................................................................................... 70
4 -8.440IDP91671 VK03_VACCC [Vaccinia virus Copenhagen]  ali follow..  20  9.......................................................PNAGDVIKGRV-YEKDYALYIYLFPHSEAILAESVKMHMD-RYVEYRDKLVGKTVKVKVIRVDYTKG.......................................................................................................................................... 75
5 -8.240IDP90294 eukaryotic translation initiation factor 2 alpha subunit, putative [Toxoplasma gondii ME49] TGME49_113230 [Toxoplasma gondii ME49]  ali follow..  20  33.......................................................PDVEDLVMVKVNRIADLGAYVSLLNNMEGMILMSELS-KRRFRSVNKLIRVGRHEVVMVLRVDPKGYIDLSKRR................................................................................................................................... 108
6 -8.170IDP90187 gene: CPXV043 CDS; CPXV043 protein AAM13490.1 [Cowpox virus (Brighton Red)]  ali follow..  22  9.......................................................PNAGDVIKGRV-YENDYALYIDLFPHSAAILAESVQMHMDRYFKYRD-KLVGKKVKVKVIRVDYTKG.......................................................................................................................................... 75
7 -5.860IDP04311 50S ribosomal protein L27 [Bacillus anthracis str. Sterne] BAS4340 [Bacillus anthracis str. Sterne]  ali follow..  22  34ADGQTVSGGSILYRQKIYPGVNVGRGDDTLYAKVDGVVGRDRKQVSVYPVAQE............................................................................................................................................................................................................... 95
8 -5.750IDP90779 gene: nusA; transcription elongation factor NusA [Yersinia pestis CO92] YPO3497 [Yersinia pestis CO92]  ali follow..  13  90........GDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVV-----EQFRQYLGQIVTGIVKKVSRDSIALDLGHNAEAVIGREDM---------RENFRPGDRIRGVLYDVRPEAR------QLFVSRSRSEMLVELFRIEVPEIGEELIEIKAAARDP-------GSRAKIAVKTNDKRIDPVGACV------GMRGARVQAVSSELGGERIDI-DDNPAQFVINAMAPADVASIVVDED............. 301
9 -5.250IDP92246 RecName: Full=Vancomycin B-type resistance protein vanW EF_2296 [Enterococcus faecalis]  ali follow..  15  82LNGLLIKPGETFSFWRLVSGGGMCQMSNLLFWVFL-IIQRSGHVVKEFPEPNSDEIKGVDATI..................................................................................................................................................................................................... 171
10 -5.060IDP91922 pneumolysin (Thiol-activated cytolysin) [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100006235 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  9  66.NDSRLYPGALLVVDETLLENAVDRAPMTYSIDLPGLASSDSFLQVEDPSNSSVRGAVNDLLKITAHSMEQLKVKFGSDFEKTGNSLDIDFNSVHSGEKQIQIVNFKQIYYTVSVDAVKNPGDVFQDTVTVEDLKQRGISAERPLVYIS-------------------SVAYGRQVYLKLETTSKSDEV--EAAFEALIKGVKVAPQTEWKQILDNTEVKADPSSGARVVTGKVDMVEDLIQEGSRFTADHPGLPISYT. 332
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.