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Query: [C] COG1145 Ferredoxin, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHHSHHLEIYEKLREKLNKAPIGLPKTVSGVEKELLSVLFDEEEAKIAVHMPFIRFTAEQLAERTGKSLEYVEKILNEMAKKGTVWKGEKDGQTYYRLFPVIVGFAETPFWPGPGKDPRQEKLARLWSQYRKEGFLDEIGDREHPIMRALPERDTISEKSEILPYEDAVKLVKERDYIAVGYCPCRVMARLVGEGCRHSIENCIHMGSVGKYMVEHGLGRRISADEAIEILRQSNREGLVHLTERSKHVATICNCCSDCCVFFKAVHEAKHPNTIAHSSYLATVDTSRCIACGICMLRCPMKAIKAKINREPASVDAEKCLGCGVCVPTCPMEAIELVERDELLELPDGMTYVQELLADKGRDPSGLFLast
1 -29.300IDP00452 electron transport complex protein RnfB YPO2245 [Yersinia pestis CO92]  ali follow..  27  101................................................................................................................................................................................................................................................................................SAAHPQRKVAFIDEANCIGCTKCIQACPVDAIIGATR-AMHTVLSDLCTGCDLCVAPCPTDCIEMIPVATTTAN...................... 173
2 -28.500IDP90516 gene: oorD; 2-oxoglutarate-acceptor oxidoreductase subunit OorD [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0535 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  29  2................................................................................................................................................................................................................................................................................SMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHIEVVHPESCIGCTECEIHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKN....... 96
3 -26.900IDP02246 gene: rnfB; Iron-sulfur cluster-binding protein [Francisella tularensis subsp. tularensis SCHU S4] FTT0649c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  23  5....................................................................................................................................................................IEAIDKVLPQIQCQKCTYPDCYSYAKAITNG--EKHNKCITGGEKTLKELAKLLNKPEIPLDSSLGQEK--------------------------------------------PRAVAKIDESMCIGCEKCLLACPVDAIVG-AKKLMHTIIEAECTGCELCVEPCPMDCISLVDLAADKQPNNLTNHAYTTQKNHYRD..... 156
4 -24.400IDP06075 gene: nuoI; NADH dehydrogenase subunit I [Helicobacter pylori J99] NP_223907 [Helicobacter pylori J99]  ali follow..  27  78............................................................................................................................................................................................................................................................................................GSERCIGCGLCEKICTSNCIRIITHKGSYTINLGRCIYCGLCAEVCPELAIVMGNRFENASTQRS................... 150
5 -24.300IDP01308 iron-sulfur cluster-binding protein VC1516 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  24  412........................................................................................................................................................................................................................................................................................TIECQTSDCTLCMSCVAVCPTRALHLAGDSPALRFIEQDCVQCGLCVKACPEQVLSATPQLN.......................... 473
6 -22.800IDP02723 gene: nuoI; NADH dehydrogenase subunit I [Francisella tularensis subsp. tularensis SCHU S4] FTT0039 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  32  59............................................................................................................................................................................................................................................................................................GEERCIACKLCEVVCPALAITINSTERSYEMDLFKCIFCGYCEESCPVDSIVETNILEYHFEERG................... 131
7 -22.400IDP06055 ferredoxin [Helicobacter pylori J99] NP_222983 [Helicobacter pylori J99]  ali follow..  30  1........................................................................................................................................................................................................................................................................................MSLLVNDECIACDACREECPSEAIEEGDP--IYSIDPDRCTECPRCVSVCPVDAILPDPNNAE......................... 68
8 -21.400IDP91439 ferredoxin [Vibrio vulnificus CMCP6] VV1_0471 [Vibrio vulnificus CMCP6]  ali follow..  20  1........................................................................................................................................................................................................................................................................................MALLITDKCINCDMCDPECPNGAISMGDK--IFEIDPNLCTECKTCQSVCPITKCIITDPNHIETEEQLLEKFVIIQGL......... 83
9 -21.000IDP00453 putative iron-sulphur protein YPO2969 [Yersinia pestis CO92]  ali follow..  19  65.................................................................................................................................................................................................................QQSCTGCGVCVAACEENLIVMVNQRPALNFSTPYFSTPY----CSRCQACSTACQTGALSSAEFHIAARPSVKNICQNTYIYCDSCADYCEKQALIW-QANQPPTLVTELCDGCGECVFRCPARILEMQ.............................. 188
10 -20.600IDP01812 ferredoxin [Francisella tularensis subsp. tularensis SCHU S4] FTT1764c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  26  1........................................................................................................................................................................................................................................................................................MPFVVTESCIKCGDCVEVCPVDCFY--EGPNMLVINPDECIDCALCEPECPVNAIKSSDDLSEN........................ 64
11 -20.500IDP04528 gene: napH; quinol dehydrogenase membrane component [Salmonella typhimurium LT2] STM2257_1_289 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  197...................................................................................................................................................................................................................................................................CGHICPMGALYGVLGSKGVVTVTAKKREKCNRCMDCFHVCPEPHVPVLDEQSPAQVTHRDCMTCGRCVDVCSEDVFTITIRNIIRDASRR................... 289
12 -19.300IDP00543 gene: fdoH; formate dehydrogenase-O, iron-sulfur subunit YPO4057 [Yersinia pestis CO92]  ali follow..  17  1..........................................................................................................................................MSLQTQDIIRRSGTNSLTPPPQVRDHQEPVAKLIDVTTCIGCKACACSEWNDIRDE--------------VGHNVGVYDNPADLTAKSWTVMRFSEVEDEESGKLEWLIRKDGCMHCADPGCLKACPSEGA----IIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDNRV----YKCTLC-ACVKTCPTGAIHFGTKESMKEVAAGRVAELK............. 206
13 -18.800IDP04683 iron-sulfur cluster-binding protein [Bacillus anthracis str. `Ames Ancestor`] GBAA3269 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  1MSVAGELDFLKRVDKALHD-------PQMRSAVPFTQDRLRMGREQATHELGNMEEWREAASEIRMHTIENLDSYLEQLATN-----VRKNGGHVHFAFK-------------------AEDAVSYVSEIVRKKGARSVIKSKSMVSEEIHLNKNLEEMGVKVVEYDLGEYIIQLAGETPSHLIAPAIHKTKEQVAESGCNFAVAESGSVVLISNEGNARLTTTLPKVRLVPTWKDLDVVISMLTRSATGQKITSYVTGINGARLHEDMDGPEEFSDILGTAYEEVLKCIRCGACVNVCPIGAVLAPLLEGYEELKEFASSLCGACTDVCPVKI-DLLIEHRKDVVEQGFITKFEQLAFK........ 403
14 -18.800IDP01006 putative anaerobic dimethylsulfoxide reductase STM2529 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18  2..........................................................................................................................................................SQFTHYPPVSDKQLGFFIDSSRCSGCKACACKDKNN-----------------------LEVGRRFRRVYEVKGGSFIPTGQGGVSNNVFAYTLSISCNHCADPVCTKNCPTTAMHK----RPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNEQTGQM----SKCDMC-VCVATCPLEAIKFGPIDELRAKYGSVCDVNGLPDSSITKPNLVV 195
15 -18.600IDP00878 putative anaerobic dimethylsulfoxide reductase subunit B STM4306 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  25  1....................................................................................................................................................................................................................................................................................MKQYGFYVDSSRCSGCKTCVSGCPTGAMHKRKEDGLVVVDDSVCVGCRYCEMRCPYGAPQFDTQANVMRLDRLENNLRPICVDSCPQRALDF 152
16 -18.600IDP02074 gene: hybA; hydrogenase 2 protein HybA [Salmonella typhimurium LT2] STM3149 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  8.........................................................................................................................................KAASGGALLLGAAPSVSHAAAENRPPIPGSLGMLYDSTLCVGCQACKCQDINFPARNPEGEQT-----------------SNNDKLSPYTNNIIQVWRSGTGVNKDQEENGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDYNNPFGAL--HKCELCGGCVEVCPAGAVIFGTREELMAEAKK................... 216
17 -17.800IDP93838 nrfc protein [Yersinia enterocolitica subsp. palearctica Y11] YP_006003981 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  25  35.....................................................................................................................................................................................................................................................................................VRYGMLHDETRCIGCTACVDVCPTGASYRDKATGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTAD....................... 150
18 -17.400IDP01082 gene: nrfC; putative formate-dependent nitrite reductase STM4279 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  25  36......................................................................................................................................................................................................................................................................................RYGMVHDESLCIGCTACVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVSKTAD....................... 150
19 -17.400IDP00930 putative hydrogenase protein STM0612 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18  1...........................................................................................................................................................................MRRAFLVNSDKCI----------GCRGCAMAC-------------------KSFNQLEPDRFWRYVYPLDKDIYPHEERAFYSLACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEETRKA----EKCSMC-ACVNACPVGALSIIDLDADPVPDNAVQY................ 157
20 -17.100IDP00983 gene: phsB; thiosulfate reductase electron transport protein STM2064 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  21  64................................................................................................................................................................................................................................................................CQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFHVRYLNPQTGVA----DKCNFC-ACVSVCPTDALKFGRLDESEIQRWVGQKEVYRQQEARSGAVSLY 181
21 -17.000IDP01518 formate dehydrogenase, iron-sulfur subunit VC1512 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  27  1....................................................................................................................................................................................................................................................................................MARMKFLCDTKRCIECNGCMAVCPADCF-VHTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQAA.......................... 111
22 -17.000IDP00961 gene: ttrB; tetrathionate reductase complex subunit B STM1385 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  22  49......................................................................................................................................................................................................................................................................................RYAMLIDLRRCIGCQSCVPVCPVQA-TFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADVHRLEAGLLPACVESCVGGARII 191
23 -16.700IDP01930 gene: narY; nitrate reductase 2 beta subunit [Salmonella typhimurium LT2] STM1578 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  20  180.............................................................................................................................................................................................................................................................................................PRLCEHC-SCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFNWKSGKSEYPRIESGQPTVCSETCVGRIRYL 269
24 -14.300IDP00470 putative iron-sulfur cluster-binding protein YPO0367 [Yersinia pestis CO92]  ali follow..  24  222.............................................................................................................................................................................................................................................................................................EEQCGRCVACMTTCPTGAIV-----APYTVDARRCIGCDDCQLICPWNRFSQLTDEDDFSPRAVLHQLLDLFAWNEEKFLRVT 325
25 -14.000IDP91392 hypothetical protein VV1_1289 [Vibrio vulnificus CMCP6] VV1_1289 [Vibrio vulnificus CMCP6]  ali follow..  20  186.............................................................................................................................................................................................................................................................................................EEACGKCQACITSCPTQAIV-----DNKVVDARRCIGCDDCQLVCPWNRYADLTQQGDFHRRSPLNSLIALFQWDEPTFLKNM 289
26 -13.800IDP00546 gene: frdB; fumarate reductase iron-sulfur subunit YPO0359 [Yersinia pestis CO92]  ali follow..  16  135..................................................................................................................................................................................................................................................................................QTPAQMAKYHQFSGCINCGLCYAACPLDNRDHGKKERMPQLNGKSCTFVGYCSEVCPKH----------VDPAAAIQQGKIDSAKDF....... 236
27 -13.700IDP92111 iron-sulfur subunit of succinate dehydrogenase, putative [Toxoplasma gondii ME49] TGME49_015280 [Toxoplasma gondii ME49]  ali follow..  16  213..................................................................................................................................................................................................................................................................................QSIEDRRKLDGMYECILCACCSTSCPSYWWNPQAYLGPAVLMQARCHGIMNCTVSCPKG----------LNPAGAIQKMKDQVEARF....... 315
28 -13.300IDP01474 fumarate reductase iron-sulfur subunit VC2657 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  8  28..........................................................................................................................................................EVPFDETMSVLDAIGYVKDHLDKDLSYRWSCRMA-------------ICGSCGIMVNGVPKLACKSFLRDYPEGVKIEPLANFPIEKDLIVDMTPFIERLEAIKPYIIGNDRKPEDGTNLQTPEQMARYKQFAGCINCGLCYAACPLDSRDNGKAERMKLINGDGCTFVGYCSEVCPKH----------VDPAAAVNQGKVESSLDF....... 236
29 -13.200IDP00512 electron transport complex protein RnfC YPO2244 [Yersinia pestis CO92]  ali follow..  11  127YRQRDKMALLDRIHQA-AGFPTASKLQGGLNGIITL--IINAAECEITADDRLMQEHADEVITGIHILRHLLQ------PQQVLIGIEDNKPEAIAALQRALRGQDDIHLRVVPTKYPSGGAKQLT----------------KILTGKEVPFGKHSSSIGVLM--QNVGTVVAIKRAVIDDEPLIERVVTLTGDALSSPGNFWARIGTPVLYLLKLAGF---KPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCIL-----------------APAETEMGLSEPEQSCIRCGLCVDACPAGLLRGEEHEKARNHNLFDCIECGACAYVCPSN-IPLVQYYRQEKAEIRALDQESARAAEAKAR.... 459
30 -12.900IDP06171 gene: nuoG; NADH dehydrogenase subunit G [Helicobacter pylori J99] NP_223905 [Helicobacter pylori J99]  ali follow..  14  3..........................................................................................................................................................TMNINGKTIECQEGQSVLEAARSAGI--CACKMCMVEMD---GKRIYSCNT--------AKNNATILTNTPTLMDERKSIMQTYDVNHPLE---------CGVCDKSGECELQDMTHLTGVEHQPYKALYDPNLCIMCERCVTTCKENNLKATKADLHAPDGSVPCYDCGECIAVCPVGALS................................ 219
31 -12.800IDP02316 gene: nuoG; NADH dehydrogenase subunit G [Francisella tularensis subsp. tularensis SCHU S4] FTT0037 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  14  11..........................................................................................................................................................SIEIDGKDYQALPNQSIIEVADANGI--CNCRM--------CLVDVEGARRASPACATPVMDGMKVKTRSEEALQMQKDVMEFLLINHPLD---------CPICDQGGECELQDIAMGYGNTTSEYLVATDMTRCILCTRCVRFGEVKELGVMGRGDHSAISTYDSEISANIIDLCPVGALT................................ 211
32 -12.800IDP02592 glycolate oxidase, iron-sulfur subunit, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA1308 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  31  23..............................................................................................................................................................................................................................................................................................LNCMRCGFCLPTCPTYIQSGYKEDEDVENTLNVCLGCRACEPVCPSGV.................................. 91
33 -12.500IDP01445 gene: sdhB; succinate dehydrogenase iron-sulfur subunit VC2088 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  24........................................................................................................................................................ILEVEEGSDMMVLDALILLKEQDPSIAFRSCVCGSDGLNMNGKNGLACITPLSALKGDKIVIRPLPGLPVVRDLIVDMTQFYDNYAKVKPFLIADDA-----------------LPPSRENLQSPEERAHLDGLYECIMCACCTTSCPIDSRDTATDERLSNLDDARCHGIMNCVSVCPKG----------LNPTKAIGHIKSMLINRS....... 235
34 -12.500IDP00615 gene: sdhB; succinate dehydrogenase iron-sulfur subunit SACOL1160 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  18........................................................................................................................................PKQKTVKLIIKRQDTSDSKPYEETFEIPYRENLNVIACLMEIVVWDMNCLEE-------------VCGACSMVINGRARQSCSAIVDQLEQPIRLEPMNTFPVIRDLQVDRSRMFDNLKRMKAWIPIDGTYDLGPGPRMPEKKRQTAYELSKCMTCGVCLEVCPNVTENNKFVGAQAISQVRLCGNSQNCVNACPKG----------IPLTTSIAAMNRETTFHM....... 259
35 -12.000IDP02194 gene: sdhB; succinate dehydrogenase iron-sulfur subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0075 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  12  24..........................................................................................................................................................TVEVENEGVKVLTALELIKEQDPTLALRRSCREG-------------VCGSDGMNINGKNRLACITSVGELKQPIKVNPLPGLPVIRDLI-VDMKQFYKNYEKVKPYLINDDEPPVKERLQSPEDRAKLDGLYECILCACCTTSCPADSRDTATEQRLEDLKDPRCRTIMNCVSVCPKG----------LNPTEAIGKIRSALLKKN....... 232
36 -11.300IDP91352 electron transport complex protein RnfC [Vibrio vulnificus CMCP6] VV1_3095 [Vibrio vulnificus CMCP6]  ali follow..  13  187............LQEHAEEVLQGI---------EIVEHILQPKLTIIGIE-DNKPEAIKALESAAQNRDIVIR-VIPTKYPSG-------------QLIKVLTN-------------------------------------------KEVPAGGIPADIGILV--QNVGSLYAIKRAVMDGEPMVNRVVTLTGNTFETPRNVWVPLGTPVHALLEQ-----QADKKLPRLIMGGPMMGFSLPHANV------------------ITKTSNCILAPTRKEISPAGYEMECIRCGACAEACPASHAKAEEFDKCEELNLKDCIECGACAFVCPSE-IPLVSYYRQAKAEIRTRAQEADAAERAKL..... 459
37 -9.710IDP90660 pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1476c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  447..YAQAYFAYDSKKS-------GYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYL--------------EIYDVLAGIRKGGTF---------------LLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFFKLAKIIPYEDAQKYMKEL----------KSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLELKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVMVPRWIEANCIQCNQCASVCPHAVIRGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKE........ 790
38 -9.670IDP06284 ferredoxin [Streptococcus pneumoniae TIGR4] NP_346049 [Streptococcus pneumoniae TIGR4]  ali follow..  19  2........................................................................................................................................................................................................................................................................................KITLIPERCIACGLCQTYSDLGIVRFYDDPDQLEKEISPSQDILEAVKNCPTRALIGNQEA........................... 68
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.