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Query: [E] COG1296 Predicted branched-chain amino acid permease (azaleucine resistance), from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSENLKEIRGGIGETLTVGLGLIPLGLAFGLLMVQTGFAWWWTPIFSFVIYAGSMEFLAIGMVTAGIGPFSAAVAGFMVNFRHIFYGLTFPRHRIKSGAGRAYSTYALTDESYAIVSARPPGDISGTRVLTVQILCQALWVIPGIIGALVGQVLPDDLKGMDFALTALFVVLAWEAFKNNKDYSLPLFAVVLALVSGFVAPEQMLVIALTTYFLILLLRVRFPNLDKKLEIRTSHELast
1 -7.110IDP04349 putative inner membrane protein [Salmonella typhimurium LT2] STM0557_1_550 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  7  1MRRKMVNNRLKMVIAILIVFSLVYSIGFITPMNSDDYTYLSLSSVKMHYLGWSGSDTISTSLLKFFSPHIYNAINSAALTLMVLCWTMIPATLTKSSPSPYVMIFLFFLY------------------FVANPALGQTNFWLVGSA------------NYLWTNMFIAIYILISIYLSNGKKSNLILFVYAISSIFAGCSNENTSLVVVLISVAYFFIMNRNKY............. 201
2 -6.680IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]  ali follow..  11  32................VPYTVALLILGIAIGLAHRGNAFHLFLFLFLPTLIFESAFAMEVHLFRRMFTQIVILAVPGLMLAI--WLTAELVAWVLPEHWQWSWALCLMFTDPVAVVALLKEVSSRKRLETLGTAIVFFSLFFVGLAVGLILGGLCNDPMIEISLTIAAAYSAFFISENFHVSGVVAVVTLAIM............................................ 278
3 -5.870IDP91946 integral membrane protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100004617 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  10  3..........................................................ISQRTTKLILATCLAYLLAYFLNLSSAVSAGIIA----------LLSLSDTRRSTLKLARNR---------------------LFSMLLALAIGVLA--GFHIWSLGLYLAFYVPLAYKMGWEIGITPSTVLVSHLLVPDLLVNEFLLFAIGTGFALLVNLYMPSREEEIQHYHTLVEE 157
4 -5.730IDP91898 amino acid ABC transporter, amino acid-binding protein/permease protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100003105 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  14  293........LLRGAGITLLISIVGTIIGLIIGLAI---------GVFRTAPLSENKAIYGLQKLVGWVLNVYIEIFTPMIVQSMVIYYGTAQAFGINLDRTLAAIFIVSINTGAYMTEIVR-----------GILAVDKGQFEAATALGTMRKIVLPQVVRNILPATGNEFVINIKDTSVLNVISVVELYFSGNTVATQTYQYFQTFTIIAVIYFVLTFTVTR............... 494
5 -5.280IDP00664 gene: htrA; serine protease SACOL1028 [Staphylococcus aureus subsp. aureus COL]  ali follow..  7  442ADAQKYTTTMKNANNTVKSVVTVENEEVGSGVVYKKSGDTLY--IVTNAHVVGDKENLAVVKATSSDSSVKEIAINNLVLGEPILVVGNPLGVDFKGTVTEGIISG---LNRNVPIDFDKDNKYDMLMKAFQIDASV----REGKLIGVVAAKISMPNVENMSFAIPVNEVQKIVKDLETKGKIDYPDVGVKMKNIASLNSFERQAVKLPGKVKNGVVVDQVDNNGLADQSGLKKGD 721
6 -5.040IDP00194 putative membrane protein YPO0983 [Yersinia pestis CO92]  ali follow..  6  127.................PISEEIIFRGFLLNAGIGFGRRGRLLAVVITSLLFAYPATFVSLFVFS-------AILCEVRIRTGSLLMPMVL.................................................................................................................................................. 200
7 -4.880IDP01697 gene: lpxB; Lipid A Disaccharide Synthase [Chlamydia trachomatis D/UW-3/CX] AAC68008 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  14  12.................PLLFANLFFGTAFCVSLTRKKGYSVVPKIFWYLSGTGAVFMICHGFIQSQYPIALLHSFNLIIYFRNLNIASLNPLPVSK-------IASLLVSVATAITVS---------FAIGTRYLPHMTWMAS............................................................................................. 125
8 -4.730IDP91444 hypothetical protein VV1_0416 [Vibrio vulnificus CMCP6] VV1_0416 [Vibrio vulnificus CMCP6]  ali follow..  18  8.................PAPLGLMGFGMTTILLNHNAGFFPIDSMILAGIFYGGLSQVIV--------GIMCFKRGDTFGTTAFTSYGL-------------FWLTLVALIVMPYMGLPASPANFMGWYL--------ALWGIFTGFMFIGSLCYPTAKQVVFGSLTILFALLAARDFTGSELIGTIFEGIFCGASAIYF..................................... 165
9 -4.700IDP90853 putative glycerol-3-phosphate acyltransferase PlsY [Yersinia pestis CO92] YPO0647 [Yersinia pestis CO92]  ali follow..  9  11................FAYLCGSISSAILVCRVARLPDPR------------HGSGNPGATNVLRIGGRTAAVA--VLLFDILKGMLPVWIAYLLHIPPLYLGLTAIAA--------------------CLGHIYPVFFHFKGGKGVATAFGAIAPIGWDLTGLMTGTWLLTVLLSGYSS----LGAIVSALIAPFYVWWFKPQFTFPVAMLSCLILM................... 175
10 -4.680IDP91607 hypothetical protein CBU_1776 [Coxiella burnetii RSA 493]  ali follow..  10  19.........................IGFMIATMEIEVGMSAEQKTIISSIFSLPKSYLKILQQLNLALACLETPFRTFLKNGEYIMVFHRMVKTFER-------VQFLMRDPLHISESKSAEPSVDRIPLTVKKIILEELW................................................................................................ 135
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.