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Query: [S] COG1963 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MELLTNFPLLSSLAAIIFAQVIKVPIQFIVSRKLDWSLVTSTGGMPSSHSAAVTALSTGVALEHGLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVINKLVIDFNRFVNEAKDFPKAAEKEKQKKLKELLGHQPIEVFFGGLTGILLTLVLAYFFMLast
1 -18.200IDP06119 hypothetical protein jhp1487 [Helicobacter pylori J99] NP_224205 [Helicobacter pylori J99]  ali follow..  13  60.......LAVGTLVTQGVIYGLKGAFSTAHKDGARVGFAKSWRGMPSGHAGGAFSAAGFVYYRYGPALPVIALAILTDTSRVVAGQ-----------------------------------------------HTILQVTIGSLIAWGFAYLFTSRY. 169
2 -8.850IDP02008 putative phosphatase [Salmonella typhimurium LT2] STM3595 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  225........................................GGGAFPSGHTNT------------------YTDALLMAEMIPERFDALVIRGARYGY-------------------------------RLVLGHYPLDVMGARMVAQRNVAHY..... 291
3 -6.560IDP05174 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_2570 [Bacillus anthracis str. Ames]  ali follow..  8  1MQPIKQVALTCIT-TGSLLSTIKELKEKLIHLNYHKKYITISNVTPKEIVKELEECNFHI--KSGVGNARYVSNYNHDYYHYCDFDRLLTWMKEYPAELNSFIQNIADVDYLGRTDRAFQTHPEEWQVTETVSNKIMSLQLGKQVDITAGSCAF.... 165
4 -6.270IDP06104 hypothetical protein jhp0654 [Helicobacter pylori J99] NP_223372 [Helicobacter pylori J99]  ali follow..  17  24......................................VLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSESVFH........................................................................... 68
5 -6.160IDP05431 hypothetical protein lmo1224 [Listeria monocytogenes EGD-e] lmo1224 [Listeria monocytogenes EGD-e]  ali follow..  16  988..............................................TFSNNVSSLLNETLDSLNIVIVVLITSAALLAFVVLYNLTNIN--VSERIRELSTI---------------------------KVLGFYPKEVLMGIAAGFILGFFLHRFII 1082
6 -5.960IDP00457 hypothetical protein YPO0570 YPO0570 [Yersinia pestis CO92]  ali follow..  15  7..............................................................SEHLRAELKSLADTLEEVLQSSTDKPKAELDKLRAKAESALKDTRVRLSETSDKIAAQTKEIADKADNYVHDNPWTGVGIGAVGVVLGVLL..... 98
7 -5.830IDP06321 ABC transporter permease [Streptococcus pneumoniae TIGR4] NP_345398 [Streptococcus pneumoniae TIGR4]  ali follow..  16  3.......RLTNKLAVSNLIKNRKLYYPFALAVLLAVTITYLFYSL--TFNPKIAEIRGGTTIQATLGFGMFVVTLASAIIVLYAELGIYGMLGLEKRHLISMT------------------------FKELVVFGILTVGAGIGIGALFDKLIFAFLL 137
8 -5.810IDP90393 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_567 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  21  3.............................................................................................................................RKIKKKRAFLLSELLIACVLISLLLGSLGYWT. 34
9 -5.490IDP04593 30S ribosomal protein S9 [Bacillus anthracis str. Sterne] BAS0144 [Bacillus anthracis str. Sterne]  ali follow..  14  47...................VVKQPLVATETLGNYDVLVNVNGGGYTGQAGAIRHGISRALLKA----DPEYRLTLKRAGLLTRDARMKRKKYGLKGA............................................................. 121
10 -5.480IDP06244 SpoIIIJ family protein [Streptococcus pneumoniae TIGR4] NP_346466 [Streptococcus pneumoniae TIGR4]  ali follow..  6  18.........................MTACATNGVTSDITAESADFWSKLVYFFAEIIRFLSFDISIGVGIILFTVLIR-TVLLPVFQVQMVASRKMQEAQPRIKALREQYPGRDMESRTKLEQEMRKVFKEMGVRQSDSLWPILIQMPVILALFQAL. 148
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.