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Query: [S] COG2311 Predicted membrane protein, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITPRDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLFWDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRAWTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRSGWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPFQAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTTLFYHLGLFMHFDRLELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGPAISKTSRLast
1 -6.330IDP05410 hypothetical protein BA_2500 [Bacillus anthracis str. Ames] BA_2500 [Bacillus anthracis str. Ames]  ali follow..  13  1MKFLRQSTIIGALTVGGFLFSNTIGTLPPASAESQPTQKESHHNADFIEELAVGDLKHGDTFDVTIYTGGKDYQLSGNENDEINLHRYKTIYDSGLKHNYGRFVTPITKAYNPGTYVAVM......................................................................................................................................................................................................................................................................... 140
2 -5.200IDP06211 hypothetical protein HP1439 [Helicobacter pylori 26695] NP_208230 [Helicobacter pylori 26695]  ali follow..  18  20.............................................................................................................................................................................................................................................................................................................GVINRMAQNSLECKKWTLALAVGVLSLKIEAISHLYGLCVLGVFVSMLLFFRRLLSHAR......................... 78
3 -4.950IDP06445 gene: H3L; H3L [Monkeypox virus Zaire-96-I-16] NP_536520 [Monkeypox virus Zaire-96-I-16]  ali follow..  20  280............ISFFGLFDINV--------------------------------------IGLIVILF------------------IMFMLIF-NVKSKLLW---------LTGTFVTAF........................................................................................................................................................................................................................................................................ 323
4 -4.670IDP00204 putative membrane protein YPO1702 [Yersinia pestis CO92]  ali follow..  12  83.GRDWSLTRLTAMACAMLLLI------PFAFTEPLISIRLLGTRIDASLLAGIWQMSRQGDPITASMVAFCVLAA---------VTLTFSILILLILERLKEWV-DIYLIGMAVACIVKEYADIMPGTGLIAYLTLTLLSILTLVHLNLEQLWERFYPQEQPPGPQETLRVCLSCHYTGHPDSHGRCPRCHTPLRHRRRHSLQKTWAALIAAIVLLLPANL------------ISIVYANGARIEDTIFSGVVSLASSGNFPIAAVVFIASVLVPFTKVIVLITLLLSIHLKTRMRLLRLITWIGRWSMLDLFVIALMMSLI--------NRDQLFSFTMGPAAFYFGSAVILTILAVEWLDS-RLIWDAY.............. 441
5 -4.630IDP95117 pullulanase-specific type II secretion system component H [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917869 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  13  4..........RGFTLLEMMLV-LLLIGVSASMVLLAFPSARTQEATQILARFQAQLDFVRERGQQT---GQLFGIIIHPERWQFMR........................................................................................................................................................................................................................................................................................................... 75
6 -4.370IDP04292 general secretion pathway protein H [Yersinia pestis CO92] YPO0812 [Yersinia pestis CO92]  ali follow..  18  6..........RAFTLLELLLA----------------------------------------MIIISGLYYSVLITLPKGSGVVKSEAENLVQGLRYINQKIRHEGGVF..................................................................................................................................................................................................................................................................................... 63
7 -4.360IDP06191 hypothetical protein jhp0361 [Helicobacter pylori J99] NP_223080 [Helicobacter pylori J99]  ali follow..  16  1..................................................................MLYASKARLFLQIKGKFMLRILIPLLIIVWVLWRLF........................................................................................................................................................................................................................................................................................... 36
8 -4.350IDP02766 hypothetical protein GBAA3318 [Bacillus anthracis str. `Ames Ancestor`] GBAA3318 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  1............................................................................................................................................................................................................................................................................................................MKIQLQKSFYFELKNAIRCHY-IYGYSILTDDCVNNIGPVANEERLIKVNKSDPLYNYYRYGAIEW................... 76
9 -4.260IDP05476 putative lipoprotein [Bacillus anthracis str. Ames] BA_2745 [Bacillus anthracis str. Ames]  ali follow..  10  1MKKSTLILCS---LCLGFSMTACEQKKEVKKQTATSSTVMENQKKESININHFSNINEGMTYKEVKDLIGFEGDLLIEEGVEHSTQIKQIFAWKG--LVEITFLDGKVHSKVQQGL............................................................................................................................................................................................................................................................................. 116
10 -4.160IDP00473 gene: ftsN; cell division protein FtsN YPO0107 [Yersinia pestis CO92]  ali follow..  10  200.............................................................................................................................................................................................................................................................................................................VEKEKEKTQRWMVQ----------CGSFKAVDQAESIRAQLAFAGIESRITS--WNRVVLGPYN---KAAADKALQRLQGAGQS 272
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.