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Query: [P] COG3067 Na+/H+ antiporter, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEISWGRAMWRNFLGQSPDWYKLALLVFLIVNPFIFLANPFIAGWLLVAEFIFTLAMALKCYPLLPGGLLAIEAVIIGMTSAAHVREEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTRLLLSIRSKMVLSLAFCVAAAFLSAFLDALTVVAVVISVAVGFYGIYHRVASSRGEENDMLDDSHIDPHYKTVLEQFRGFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLVCGLLTCMLVEKMRWFGYGETLPEKVRDVLQQFDDQSRKKRTRQDKIKLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATALTGVTDEHAIGKAFTESLPFTALLTVFFSIVAVIIDQHLFAPIIQFVLQASEHAQLTLFYLFNGLLSSISDNVFVGTIYINEAKAAMENGAISLKQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLTLIGLLCVEFTLAPATEWMTQAGWLATLSLast
1 -37.900IDP91340 di- and tricarboxylate transporter [Vibrio vulnificus CMCP6] VV2_0102 [Vibrio vulnificus CMCP6]  ali follow..  11  35.............................................MVIFVTTVLSLILAPLPLGAMALLGLTAATLLGVLPIKTALNGFAHPTIWMIAAAFFISRGFITTGFGRRVGYWFISKLHNSLGLAYGLVLTDLLFAPATPSTT----------------------------ARCGGIIAPLFRSVASAYDSDP--LVQCIFQCNAITCAMFLTSMAGNPLAANFAKITWAGWAAAAIVPGLLCLFLIPLAMYLFFPPEL----KKTPEMRAIAKEKLQQMGAMTRDEIMVCATFIGMVTLWVLGPTLGIHATVTALIGLVFLLLSRTIT----AVLSEKEAWHTITWFAVLIMMASELNKLGFIKWFSNGIGESLSGFGTTIILLLLVYYYSHYLMASAMAHISAMYSAFLAIAISAGVPPM---LAAIVLGIFSNLYMSTTHYSSGPAPILFGAGF-----HSLQNWWKIGFVFSLIVIPIFIFVGGMWWKVL.............. 464
2 -9.860IDP00184 putative membrane protein YPO0624 [Yersinia pestis CO92]  ali follow..  20.............................................LLFIVSCSLFFSVFHVFDMTALAMLAFLAIMIGAIFSRNVSHYWKVTIATILLIIGMYAKMIAQSGVADSFALLANHLGLHGGAFTLFTFISVCIVA-------------------------TATGTSV----GTLFTAFPVFYPSGILLGADPVVLASAILCGAIFGDNIAPISD-TTVASSSTQTYKHKPGSAEIAGVVAARFRFAIVSAIIA-----ALFYFLGSNNIPLAESSLVRDSQASYRSLWMLVPMAVLLIVAMKTRNIFKAIPSGILTGIIIGLLSGIFNLTDIFALDNGNV-STILFVLSLFGIIGILRASKTMDRISAAICSSRLASAQGAEWCIAIGSIIATALVVTSASILAFGPVANEIGLRKSLHPYRRAVL---VDCFAMTLAAIIPFLSAFIFIVSAIISSLQNPIDLSLAAFYPLTLFVVMSFSIIV....................... 463
3 -7.940IDP04525 putative Na+/H+ antiporter [Salmonella typhimurium LT2] STM1556_1_483 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18......................................................................IPVISMLLLLIIGYGIMGLRIEPLLLCSAAVAAGIAWWQGYCWEDIINSVVDKLAKAMPVIMILICVSGTIPYMVYWGLKLISPEYILIAAFFLTSVVSVCTG--TSWGSAGTVGVALMGVAAGLDVSLAAAAGAVVSGAYFGDKISPLSDSTNF-AAIVADTTLFEHIQHLLWTTLPSFLLAAVVYLIA-----HSNMLGEVATPQRVTDIIHSLESLYHFNIVLILPPVIVLWGAIRKKPVIPLMLSACVLALFLGVIMQGLSIKQGLDAFID---GTILLVFCAFSFAGALTLTGALTIIINRLLTIIHSVGQLIAATIGTTILVTGATSDGKLALLVPAELFKDAYRRMGLDTKNLS----TIEDAGTVIEPLLPWTSAGVYMATTLGVSTLDLLPWAIQCYAAIFFALIYGFSGI........................ 464
4 -7.050IDP04013 putative permease [Salmonella typhimurium LT2] STM2913_1_498 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12.............................................IVAVFVLVWLVLRTRVHALIAMLAAACIAGLLGGMGIDKTLSVITSGFIGLVIGLVMMGRLLEVSGAAERIAWSFIKWLGKRREEWA-----------------------------LAITGYIVSIPIFVD--SAFVILYPVAKALAKSGKRSLLTLGVALAGGLVVTHHTVP--TPGPLGVAGIFNVDIGAMLLTGMALAVPCVIGIVFYAQWLDKRYPDFVPRTLNADEVNAALEQYNKEKEQKELPSLTLSLLPIVVPIVLIFLKAICSTLIALAISVLLAVYTLVPRMDKHTTAERLE-EGLQSAGIILLVTGALRDSGAGQQLAEQV----ANLPISPILIPFIVATLVSGTVAMITAASISAPILAQIP------GINMLLAAQAATMGSLF---FGYFNDSLFWVVNRMMGVSDVKQQMVVWSVPTTIAWAIGGTGVVLINLL................... 459
5 -4.730IDP95377 set238a-014 [Vibrio cholerae]  ali follow..  11  377.........MKAFLKQEREKLAQVLLEQITEDRVALFSRFYPAAWY------FDATNVESLQNLLATEYACIQDICWSETSSKLIADQLDKMPWI----GLFTLPAENFDKITQEIQISELQKLVAAEDDLTAINTIGLELNGLLAQEFTGQDWGSRLISLDEGMRAFDSLIDASYAQANTLVLAKATSEFLEDANANKQFDPKRVFRDLSGSAWLNMLKA--SVGLANKAEFEFDMLRNQAVSMREENVSLKNQLRQELVKLRKQGKSINQSASISKMRQDLKRNQSNLLMMENKLAEALSPLLRQLKTRSVNLGKYSVRIKAGKWDVLSFILVCFSISNAYKALS-EVTGALSGIFGFAQGVRAATDMAAIKLVSSKVSQLVYGANLGKWTTYLGGSAYFFGIISSTLKVASAYDAFIQ--GDNKAAISLVAEGALVRVNYVGLRESGKVVYTVFKADKAVRNGANLLSIRLTLIGIALSAIQLGATVWYNRTSLSQYLTWFANSQW..... 919
6 -4.680IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]  ali follow..  11  10.............................................LLFVIIALFIGALVRHLLKGSQVPYTVALLILGIAETLSLASEIDPHLFLLFLPTLIFESAFAME----------VHLFRRMFTQIVILAVPGLMLAIWLTAELVAWVLPEHWQWSWALCLMFGALISATDPVAVVALLKEVSSRKRLETLIEGESLLTAIVFFSLFYGWVLMEFSNPGEAITAPPWQAVAQFFVVVFVGLAVGLILGGLCILWI-------------------------DRVFNDPMIEISLTIAAAYSAFFISENFHVSGVVAVVTLAIMFASVGRTRISPEVAGFLHHFWEMMAHMANIFLLVG--------------ILVAIRVPLDDKEAWLALFVLYLGIMAIRACSITVFMPILKRIGI--GITYEKAVVLCW--------GG---LRGAVSLALAMTVASSDIIPKQIGDVLFLCAGIVVLTILFNGSTMGHVLKWL.............. 427
7 -4.510IDP04349 putative inner membrane protein [Salmonella typhimurium LT2] STM0557_1_550 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13........................VIAILIVFSLVYSIGFITSGRVVTISTSLLKFFSPHIYNAINSAALTLMVLCWTMIPATLTKSSPSPYVMIFLFFLYFVANPALGQTNFWLVGS-------------ANYLWTNMFIAIYILISIYLSNGKKSNLILFVYAISSIFAGCSNENTSLVVVLISVAYFFIMNRNKYLLIGVFGSAI-----GAGVLLLAPGNLSLAWRVLEHFSERLPSAMGAYWQVYIAFIILLISVVLSR----------------------NSSSKLMFGSFLFMLGAIAANVAFLASPAMPSRALNGALCFMILSISFVAHSAFTKFNKASIYLSVTTYAMAFLYFIPS..................................................................................................................................................... 353
8 -4.100IDP92565 nonstructural protein 1, partial [Dengue virus 2] AAA66406 [Dengue virus 2]  ali follow..  11  54...........RYRGEDGCWYGMEI---LVNSLVT--IDNFSLGVLGMALFLEEMLRTRVGTKAILLVAVSFVTLITGNMSFRDLGRVMTDDIGMGVTYLALLAAFKVRPTFAAGLLLRKLTSKELMMTTIIVLLSQSTILGMMVLKMVRKMEKYQLAVTIMAILCVPNAVILQNAWKVSCTILAVVSVSPLFLTSSQQKADWIPLALTIKLNEAIMAVG-----MVSILASSLLKNDIPMTGPLVAGGLLTVCYVL................................................................................................................................................................................................................................................................. 346
9 -3.920IDP05182 gene: gerHA; spore germination protein GerHA [Bacillus anthracis str. Ames] BA_4984 [Bacillus anthracis str. Ames]  ali follow..  264.DRIHSLQDLIEKLKKSSDFVNYHTSDDETMPYWISYYRPSLDGEKLQKYLMPTLLERPNASLEELKEHIPMSGITITNDLQKIEDMVLKGHAIVQVNQQDQKCMLANIAID---------RAPTPPLNESTVIGPQEGFVEDIDTNINLVRKRLPVLDLQTKEMIVTKVVMMYLDNLAEKDNVDFLEESLRA--EKSIFPLYINTRVTKALGKIAIFVDGSPSVLLTPVS---YFDFF---------------------------------------ISPEDYNVSWLYATFSRILRLIAVLFSICATPLYVAVLNYHYELIPSDLLETLILSR--------AQVPFPPLIEALFLELAIDLLREAGA------RLPMKVGQTLGIVGGIVIGQASVQAGLTSNILLIIVALSALASFITPIYKMGNAVRLLRFPFLIFAEIGG---LFGISLGFIFL---------THLFRLTSLRKPYALFY............................. 699
10 -3.860CPX_91687_91742 Complex of PLMN_HUMAN with Q6V4L9_STRPY [Undefined organism]  ali follow..  11  667.......ALLK----SSPAVITDKVIPACLPSPNYVVTECFITGW-LLKEAQLPVIENKVCNRYFLNGRVQSTELCAGHLATDSCQGDSGGPLVCFEKDKYILQGVTSVSRFVTWIEGVMRNNXRKLKTGTASVAVALTVLGAGFANQTEEREKNDKLSSENEGLKAGLQEKEQELKNLKADVEKLKDAAELERLKNERHDHDELERLKNERHDHDKREAERKALEDKLADKQEHLDGALRYINEKEA--------------ERKEKEAEQKKLKEEKQISDASRQGLRRDLDASREAKKQVEKDLANLTAELDKVKEEKQISDASRQGLRRDLDASREAKKQVEKDLADL---QISDASRQGLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEE--SKKLTEKAELQAKLEAEAKALKEQLAKQAEELAKLRAEKASDSQTPDAKPGNKAGKGQAPQAGTK---MKETKRQLPST................................ 1198

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.