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Query: [O] COG3175 Cytochrome oxidase assembly factor, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTQTPASPDPTDDARAAERGLNRAMLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDGGALRNTQVDQARTVTVEFDSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVNKEGRSVSAQAIPSYAPKQATEFFKKIECFCFKQQTLAGNESREMPVVFVIDPDLPKDVKTITLSYTFFEIGKPVAQTPTVPGKGTLast
1 -12.500IDP05670 hypothetical protein lmo0617 [Listeria monocytogenes EGD-e] lmo0617 [Listeria monocytogenes EGD-e]  ali follow..  6  2....................KKLKSILLLMGIITFALALT----------C---GGTEDKASTEKIETAKAETKKKSNPNELG-----DYKVEILSSEVVKDFEGNNAIAIKTKFTNNSKENISFMVAIDQQAFQNGTQLETTV----SEKDVQPGGTLEVTELY----KLQDTQNTVDIEAT................... 147
2 -8.920IDP05463 spore coat-associated protein [Bacillus anthracis str. Ames] BA_1288 [Bacillus anthracis str. Ames]  ali follow..  10  2...................TLKKKLGMGIASAVLGAALVGGGT---FAFFSDKEVSNNTFATG-----------------TLDLALNPSTVVNVS------NLKPGDTVEKEFKLENKGTLDIKKVLLKTDYNVEDVKKDNKDD---WDEKGISAGDKFKVKFEFVDNKKDQNEFQGDKLQLTWFDAQQGDGETK....... 195
3 -8.320IDP05159 gene: calY; camelysin [Bacillus anthracis str. Ames] BA_1290 [Bacillus anthracis str. Ames]  ali follow..  8  2...................SLKKKLGMGVASAALGLSLIGGGTFAYF------------------SDKEVSNNTFAAGTLDLTLDPKTLVDIK--------DLKPGDSVKKEFLLKNSGSLTIKDVKLATKYTVKDVKGDNAGE----GGLEAGTEDYLWVQFEFVDDGKDQNIFQGDSLNLEWFNANQEAGEEK....... 197
4 -8.200IDP06532 prophage superinfection immunity protein [Enterococcus faecium DO] AFK58444 [Enterococcus faecium DO]  ali follow..  7  1MAKKVMGQDGKMYKVSKPFYKKVWFWVLAVILIIIIGS------------ALNGGSDSNKASDNGGEKVTKSSTSASSSKEEKSDTFYKIGDTVKVGDAEYTLNPAQVVKITYTVKNDGDSDIPVGTDVEVYGPDDKKSETYAN---NTMGSVAPGKQMDVTAHFTLNQK-----GEIEIHFS................... 179
5 -7.980IDP04052 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_0049 [Clostridium perfringens ATCC 13124]  ali follow..  9  5..................................LLVGILWVTLSLFVLGCSTSGEKNTINIPIEKSREEEKSKDEEEYIDKISSTIVNMSVDGSIKNMRTVSETGKLNNTMIEQLERSNEDLKGVKV----PEKFASYLNKAKTSLETMKNSHDKEIIKSNAKIFIEKEVSNLVDKILVYYA................... 165
6 -7.170IDP05753 hypothetical protein lmo0461 [Listeria monocytogenes EGD-e] lmo0461 [Listeria monocytogenes EGD-e]  ali follow..  10  2.....................KKKKVVVISLLLLLVSVIGISSYFLFKDKINLLDVDPSAVEWNGKKQKDTSGEENT----IAIPGFEKVTLYANETKQAVNFHNPEINDCYFKISLIHPDGSVLWRSDLIEP---GKGMYSIEL----EKTLAVGEYENAVLKYCFSLNDQSPLNGSEINLKL.................. 154
7 -7.060IDP90095 ZZZ_0011 [Escherichia coli 042]  ali follow..  9  2...................MTIKCLLLAVMVCPFFITA------------CSDK----YSEQDRVQAINNADAPFGAGLLTFQISSDTQL--------NSLNEISNSCALLFLQASDKNTLQDIMNNPVLIKQFFIGTGKVD-GILKVDKYVAMPGQEITLHI------DRNEGTKYVGVVAGYYPFPGKQ........... 142
8 -6.500IDP05418 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_1561 [Bacillus anthracis str. Ames]  ali follow..  14  4......................NKWLFRFIGFLVMLVVITTLN----------------SLNVFASVNDLAQPIASAKVIEVELN-----DDYFNP--NVITIPINESTTLLLKNKGKSEHTFTKEKNITVKPKSAGTY----ELIC....................................................... 114
9 -5.910IDP91154 hypothetical protein SAOUHSC_00808 [Staphylococcus aureus subsp. aureus NCTC 8325] SAOUHSC_00808 [Staphylococcus aureus subsp. aureus NCTC 8325]  ali follow..  8  2......................KKVMGILLASTLILGACGHHQDSAKKESTSHKKKENDNEELNEELKEFKSKKNMDIKIKGDTIVSDKFEAKIKEPFIINEKDEKKKYIAFMEITAKKDDKDLNPSSISHDYINITQDDKNTV----NQDQIKKGKTAQAMFIYELRGDVHKYSEDKTVDSKSFKFSKLKTEDFSHRAETR 204
10 -5.860IDP05371 conserved repeat domain protein [Bacillus anthracis str. Ames] BA_3601 [Bacillus anthracis str. Ames]  ali follow..  10 1776........................................................PGEPPVVVTEPSNTTITSINRGRFSVIKSVNKE------------ATRLGDTLTYSVQVTNTGTVTATNVQFIDVPSPSLEFVPGSVQ---FSLPDLAVGDSVLITFAVNVIAVPPSSMNTARVTGDFELIPGEPPFTITNSSNTT 1922
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.